RNA–Protein interactions for RNA: ENST00000600840.1

TRIM28-214, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 338 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-214ENST00000600840 DNMT1P26358 1616 aaKnown RBP13.82□□□□□ -0.2
TRIM28-214ENST00000600840 SENP3Q9H4L4 574 aaPredicted RBP13.82□□□□□ -0.2
TRIM28-214ENST00000600840 PLXNC1O60486 1568 aa13.82□□□□□ -0.2
TRIM28-214ENST00000600840 PLEKHH2Q8IVE3 1493 aa13.81□□□□□ -0.2
TRIM28-214ENST00000600840 CPS1P31327 1500 aa13.8□□□□□ -0.2
TRIM28-214ENST00000600840 TOM1O60784 492 aa13.8□□□□□ -0.2
TRIM28-214ENST00000600840 A2MP01023 1474 aa13.8□□□□□ -0.2
TRIM28-214ENST00000600840 NCOA2Q15596 1464 aa13.8□□□□□ -0.2
TRIM28-214ENST00000600840 SHANK2Q9UPX8 1470 aa13.8□□□□□ -0.2
TRIM28-214ENST00000600840 A2ML1A8K2U0 1454 aa13.79□□□□□ -0.2
TRIM28-214ENST00000600840 GGT6Q6P531 493 aa13.78□□□□□ -0.2
TRIM28-214ENST00000600840 KANK4Q5T7N3 995 aaPredicted RBP13.77□□□□□ -0.21
TRIM28-214ENST00000600840 VWDEQ8N2E2 1590 aa13.77□□□□□ -0.21
TRIM28-214ENST00000600840 ADGBQ8N7X0 1667 aa13.76□□□□□ -0.21
TRIM28-214ENST00000600840 CAMSAP2Q08AD1 1489 aa13.75□□□□□ -0.21
TRIM28-214ENST00000600840 STRCP1A6NGW2 1772 aa13.75□□□□□ -0.21
TRIM28-214ENST00000600840 LRRC9Q6ZRR7 1453 aa13.74□□□□□ -0.21
TRIM28-214ENST00000600840 MAP3K1Q13233 1512 aa13.74□□□□□ -0.21
TRIM28-214ENST00000600840 RTEL1-TNFRSF6BF6WH68 1400 aa13.73□□□□□ -0.21
TRIM28-214ENST00000600840 RGS17Q9UGC6 210 aaPredicted RBP13.72□□□□□ -0.21
TRIM28-214ENST00000600840 DHX29Q7Z478 1369 aaKnown RBP13.71□□□□□ -0.21
TRIM28-214ENST00000600840 FBXO31Q5XUX0 539 aaPredicted RBP13.71□□□□□ -0.21
TRIM28-214ENST00000600840 CCDC141Q6ZP82 1450 aa13.71□□□□□ -0.21
TRIM28-214ENST00000600840 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.71□□□□□ -0.22
TRIM28-214ENST00000600840 TNRQ92752 1358 aa13.7□□□□□ -0.22
TRIM28-214ENST00000600840 RNF17Q9BXT8 1623 aaKnown RBP13.68□□□□□ -0.22
TRIM28-214ENST00000600840 ARHGEF5Q12774 1597 aa13.68□□□□□ -0.22
TRIM28-214ENST00000600840 NPHP4O75161 1426 aaPredicted RBP13.68□□□□□ -0.22
TRIM28-214ENST00000600840 KIF3BO15066 747 aa13.68□□□□□ -0.22
TRIM28-214ENST00000600840 IQGAP1P46940 1657 aa13.68□□□□□ -0.22
TRIM28-214ENST00000600840 LRRC7Q96NW7 1537 aa13.68□□□□□ -0.22
TRIM28-214ENST00000600840 DEPDC5O75140 1603 aa13.67□□□□□ -0.22
TRIM28-214ENST00000600840 ANKLE2Q86XL3 938 aa13.66□□□□□ -0.22
TRIM28-214ENST00000600840 SETD1AO15047 1707 aaKnown RBP13.66□□□□□ -0.22
TRIM28-214ENST00000600840 RSPH4AQ5TD94 716 aa13.65□□□□□ -0.22
TRIM28-214ENST00000600840 MED14O60244 1454 aa13.65□□□□□ -0.22
TRIM28-214ENST00000600840 PZPP20742 1482 aa13.65□□□□□ -0.22
TRIM28-214ENST00000600840 SYNMO15061 1565 aa13.64□□□□□ -0.23
TRIM28-214ENST00000600840 UGGT1Q9NYU2 1555 aa13.64□□□□□ -0.23
TRIM28-214ENST00000600840 KDM5DQ9BY66 1539 aa13.64□□□□□ -0.23
TRIM28-214ENST00000600840 MYOM3Q5VTT5 1437 aa13.64□□□□□ -0.23
TRIM28-214ENST00000600840 TSPY4P0CV99 314 aa13.63□□□□□ -0.23
TRIM28-214ENST00000600840 TSPY10P0CW01 314 aa13.63□□□□□ -0.23
TRIM28-214ENST00000600840 MAST1Q9Y2H9 1570 aa13.62□□□□□ -0.23
TRIM28-214ENST00000600840 XIRP1Q702N8 1843 aaKnown RBP13.62□□□□□ -0.23
TRIM28-214ENST00000600840 POTEAQ6S8J7 498 aa13.62□□□□□ -0.23
TRIM28-214ENST00000600840 ZC3H13Q5T200 1668 aaKnown RBP13.62□□□□□ -0.23
TRIM28-214ENST00000600840 MIA2Q96PC5 1412 aa13.61□□□□□ -0.23
TRIM28-214ENST00000600840 FAM135AQ9P2D6 1515 aa13.6□□□□□ -0.23
TRIM28-214ENST00000600840 THEMISQ8N1K5 641 aaPredicted RBP13.6□□□□□ -0.23
TRIM28-214ENST00000600840 NLRP1Q9C000 1473 aa13.6□□□□□ -0.23
TRIM28-214ENST00000600840 WASHC2CQ9Y4E1 1318 aa13.6□□□□□ -0.23
TRIM28-214ENST00000600840 MROH1Q8NDA8 1641 aa13.59□□□□□ -0.23
TRIM28-214ENST00000600840 APLP2Q06481 763 aa13.58□□□□□ -0.24
TRIM28-214ENST00000600840 PTPN23Q9H3S7 1636 aa13.57□□□□□ -0.24
TRIM28-214ENST00000600840 ABCC5O15440 1437 aa13.57□□□□□ -0.24
TRIM28-214ENST00000600840 CFAP65Q6ZU64 1925 aaKnown RBP13.56□□□□□ -0.24
TRIM28-214ENST00000600840 CROCC2H7BZ55 1655 aa13.56□□□□□ -0.24
TRIM28-214ENST00000600840 CEP152O94986 1710 aa13.56□□□□□ -0.24
TRIM28-214ENST00000600840 ABCC3O15438 1527 aa13.55□□□□□ -0.24
TRIM28-214ENST00000600840 EIF2AK4Q9P2K8 1649 aaKnown RBP13.54□□□□□ -0.24
TRIM28-214ENST00000600840 UBR1Q8IWV7 1749 aa13.54□□□□□ -0.24
TRIM28-214ENST00000600840 PPARGC1BQ86YN6 1023 aaKnown RBP13.54□□□□□ -0.24
TRIM28-214ENST00000600840 RRP7BPQ9NSQ0 103 aa13.53□□□□□ -0.24
TRIM28-214ENST00000600840 FGD6Q6ZV73 1430 aa13.53□□□□□ -0.24
TRIM28-214ENST00000600840 DUOX2Q9NRD8 1548 aa13.53□□□□□ -0.24
TRIM28-214ENST00000600840 DAPK1P53355 1430 aa13.52□□□□□ -0.25
TRIM28-214ENST00000600840 ROBO1Q9Y6N7 1651 aa13.51□□□□□ -0.25
TRIM28-214ENST00000600840 KIF15Q9NS87 1388 aa13.51□□□□□ -0.25
TRIM28-214ENST00000600840 CHIC2Q9UKJ5 165 aa13.51□□□□□ -0.25
TRIM28-214ENST00000600840 ERVK-7P63135 1459 aa13.5□□□□□ -0.25
TRIM28-214ENST00000600840 SCAF11Q99590 1463 aaKnown RBP13.5□□□□□ -0.25
TRIM28-214ENST00000600840 FAM135BQ49AJ0 1406 aa13.48□□□□□ -0.25
TRIM28-214ENST00000600840 LTKP29376 864 aa13.48□□□□□ -0.25
TRIM28-214ENST00000600840 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.47□□□□□ -0.25
TRIM28-214ENST00000600840 PRDM15P57071 1507 aaPredicted RBP13.47□□□□□ -0.25
TRIM28-214ENST00000600840 RBM33Q96EV2 1170 aaKnown RBP13.46□□□□□ -0.25
TRIM28-214ENST00000600840 ERBINQ96RT1 1412 aa13.46□□□□□ -0.26
TRIM28-214ENST00000600840 ARHGAP23Q9P227 1491 aa13.45□□□□□ -0.26
TRIM28-214ENST00000600840 TMEM94Q12767 1356 aa13.45□□□□□ -0.26
TRIM28-214ENST00000600840 PHLPP1O60346 1717 aa13.44□□□□□ -0.26
TRIM28-214ENST00000600840 SLIT1O75093 1534 aa13.44□□□□□ -0.26
TRIM28-214ENST00000600840 TXNDC2Q86VQ3 553 aa13.44□□□□□ -0.26
TRIM28-214ENST00000600840 FAM50AQ14320 339 aaKnown RBP13.43□□□□□ -0.26
TRIM28-214ENST00000600840 ANKRD30AQ9BXX3 1397 aa13.43□□□□□ -0.26
TRIM28-214ENST00000600840 ARHGAP31Q2M1Z3 1444 aa13.42□□□□□ -0.26
TRIM28-214ENST00000600840 UPF1Q92900 1129 aaKnown RBP eCLIP13.42□□□□□ -0.26
TRIM28-214ENST00000600840 PIK3C2BO00750 1634 aa13.42□□□□□ -0.26
TRIM28-214ENST00000600840 ADGRL2O95490 1459 aa13.41□□□□□ -0.26
TRIM28-214ENST00000600840 RRBP1Q9P2E9 1410 aaKnown RBP13.4□□□□□ -0.26
TRIM28-214ENST00000600840 LRP6O75581 1613 aa13.4□□□□□ -0.26
TRIM28-214ENST00000600840 TRIM52Q96A61 297 aa13.39□□□□□ -0.27
TRIM28-214ENST00000600840 LMTK2Q8IWU2 1503 aa13.39□□□□□ -0.27
TRIM28-214ENST00000600840 COL16A1Q07092 1604 aaPredicted RBP13.38□□□□□ -0.27
TRIM28-214ENST00000600840 IDI1Q13907 227 aa13.37□□□□□ -0.27
TRIM28-214ENST00000600840 PROSER2Q86WR7 435 aaPredicted RBP13.37□□□□□ -0.27
TRIM28-214ENST00000600840 KANK1Q14678 1352 aa13.36□□□□□ -0.27
TRIM28-214ENST00000600840 JCADQ9P266 1359 aa13.36□□□□□ -0.27
TRIM28-214ENST00000600840 SLC26A8Q96RN1 970 aa13.36□□□□□ -0.27
TRIM28-214ENST00000600840 EID1Q9Y6B2 187 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 62 ms