RNA–Protein interactions for RNA: ENST00000596938.1

CCDC9-203, Transcript of coiled-coil domain containing 9, humanhuman

TSL 3

Gene CCDC9, Length 457 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9-203ENST00000596938 DAPK1P53355 1430 aa16.28■□□□□ 0.2
CCDC9-203ENST00000596938 FBXO31Q5XUX0 539 aaPredicted RBP16.27■□□□□ 0.2
CCDC9-203ENST00000596938 CLTCQ00610 1675 aaKnown RBP16.27■□□□□ 0.19
CCDC9-203ENST00000596938 KIF15Q9NS87 1388 aa16.26■□□□□ 0.19
CCDC9-203ENST00000596938 KDM5DQ9BY66 1539 aa16.25■□□□□ 0.19
CCDC9-203ENST00000596938 DUOX2Q9NRD8 1548 aa16.25■□□□□ 0.19
CCDC9-203ENST00000596938 ANKRD30AQ9BXX3 1397 aa16.25■□□□□ 0.19
CCDC9-203ENST00000596938 FAM50AQ14320 339 aaKnown RBP16.24■□□□□ 0.19
CCDC9-203ENST00000596938 CHIC2Q9UKJ5 165 aa16.24■□□□□ 0.19
CCDC9-203ENST00000596938 PZPP20742 1482 aa16.23■□□□□ 0.19
CCDC9-203ENST00000596938 PTPRTO14522 1441 aa16.23■□□□□ 0.19
CCDC9-203ENST00000596938 NCOA1Q15788 1441 aa16.23■□□□□ 0.19
CCDC9-203ENST00000596938 FBXO41Q8TF61 875 aa16.23■□□□□ 0.19
CCDC9-203ENST00000596938 ERBINQ96RT1 1412 aa16.22■□□□□ 0.19
CCDC9-203ENST00000596938 PKD2Q13563 968 aa16.22■□□□□ 0.19
CCDC9-203ENST00000596938 TNRQ92752 1358 aa16.22■□□□□ 0.19
CCDC9-203ENST00000596938 DNMT1P26358 1616 aaKnown RBP16.21■□□□□ 0.19
CCDC9-203ENST00000596938 EIF2AK4Q9P2K8 1649 aaKnown RBP16.2■□□□□ 0.18
CCDC9-203ENST00000596938 CERKQ8TCT0 537 aa16.2■□□□□ 0.18
CCDC9-203ENST00000596938 RNF17Q9BXT8 1623 aaKnown RBP16.19■□□□□ 0.18
CCDC9-203ENST00000596938 A2ML1A8K2U0 1454 aa16.19■□□□□ 0.18
CCDC9-203ENST00000596938 ABCC3O15438 1527 aa16.19■□□□□ 0.18
CCDC9-203ENST00000596938 NCKAP5LQ9HCH0 1330 aa16.19■□□□□ 0.18
CCDC9-203ENST00000596938 STRCQ7RTU9 1775 aa16.18■□□□□ 0.18
CCDC9-203ENST00000596938 PLA2R1Q13018 1463 aa16.17■□□□□ 0.18
CCDC9-203ENST00000596938 CAMSAP1Q5T5Y3 1602 aa16.17■□□□□ 0.18
CCDC9-203ENST00000596938 THEMISQ8N1K5 641 aaPredicted RBP16.17■□□□□ 0.18
CCDC9-203ENST00000596938 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.17■□□□□ 0.183e-8■■■■□ 26.5
CCDC9-203ENST00000596938 ADGRL2O95490 1459 aa16.16■□□□□ 0.18
CCDC9-203ENST00000596938 PPARGC1BQ86YN6 1023 aaKnown RBP16.16■□□□□ 0.18
CCDC9-203ENST00000596938 CEP170BQ9Y4F5 1589 aaPredicted RBP16.16■□□□□ 0.18
CCDC9-203ENST00000596938 KANK1Q14678 1352 aa16.15■□□□□ 0.18
CCDC9-203ENST00000596938 CROCC2H7BZ55 1655 aa16.15■□□□□ 0.18
CCDC9-203ENST00000596938 ARHGAP31Q2M1Z3 1444 aa16.15■□□□□ 0.18
CCDC9-203ENST00000596938 MROH1Q8NDA8 1641 aa16.15■□□□□ 0.18
CCDC9-203ENST00000596938 MYO3AQ8NEV4 1616 aa16.15■□□□□ 0.18
CCDC9-203ENST00000596938 NLRP1Q9C000 1473 aa16.15■□□□□ 0.18
CCDC9-203ENST00000596938 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.13■□□□□ 0.17
CCDC9-203ENST00000596938 ZNF142P52746 1687 aaPredicted RBP16.13■□□□□ 0.17
CCDC9-203ENST00000596938 ANKLE2Q86XL3 938 aa16.12■□□□□ 0.17
CCDC9-203ENST00000596938 PRDM15P57071 1507 aaPredicted RBP16.12■□□□□ 0.17
CCDC9-203ENST00000596938 ZC3H13Q5T200 1668 aaKnown RBP16.11■□□□□ 0.17
CCDC9-203ENST00000596938 ERVK-7P63135 1459 aa16.11■□□□□ 0.17
CCDC9-203ENST00000596938 ROCK1Q13464 1354 aa16.11■□□□□ 0.17
CCDC9-203ENST00000596938 ANKRD50Q9ULJ7 1429 aa16.11■□□□□ 0.17
CCDC9-203ENST00000596938 SPATA31D1Q6ZQQ2 1576 aa16.1■□□□□ 0.17
CCDC9-203ENST00000596938 LMTK2Q8IWU2 1503 aa16.08■□□□□ 0.16
CCDC9-203ENST00000596938 UGGT1Q9NYU2 1555 aa16.07■□□□□ 0.16
CCDC9-203ENST00000596938 DEPDC5O75140 1603 aa16.07■□□□□ 0.16
CCDC9-203ENST00000596938 VWDEQ8N2E2 1590 aa16.06■□□□□ 0.16
CCDC9-203ENST00000596938 ITGAEP38570 1179 aa16.05■□□□□ 0.16
CCDC9-203ENST00000596938 LTBP4Q8N2S1 1624 aa16.05■□□□□ 0.16
CCDC9-203ENST00000596938 ZNF335Q9H4Z2 1342 aaPredicted RBP16.04■□□□□ 0.16
CCDC9-203ENST00000596938 IDI1Q13907 227 aa16.03■□□□□ 0.16
CCDC9-203ENST00000596938 SLC52A1Q9NWF4 448 aa16.02■□□□□ 0.16
CCDC9-203ENST00000596938 MED14O60244 1454 aa16.02■□□□□ 0.15
CCDC9-203ENST00000596938 CEP152O94986 1710 aa16.02■□□□□ 0.15
CCDC9-203ENST00000596938 RRBP1Q9P2E9 1410 aaKnown RBP16.02■□□□□ 0.15
CCDC9-203ENST00000596938 NOS1P29475 1434 aa16.01■□□□□ 0.15
CCDC9-203ENST00000596938 IQSEC2Q5JU85 1478 aa16■□□□□ 0.15
CCDC9-203ENST00000596938 NPHP4O75161 1426 aaPredicted RBP16■□□□□ 0.15
CCDC9-203ENST00000596938 LTKP29376 864 aa15.99■□□□□ 0.15
CCDC9-203ENST00000596938 TXNDC2Q86VQ3 553 aa15.99■□□□□ 0.15
CCDC9-203ENST00000596938 STAG3Q9UJ98 1225 aa15.99■□□□□ 0.15
CCDC9-203ENST00000596938 RPRD2Q5VT52 1461 aaKnown RBP15.98■□□□□ 0.15
CCDC9-203ENST00000596938 NEURL4Q96JN8 1562 aa15.98■□□□□ 0.15
CCDC9-203ENST00000596938 EID1Q9Y6B2 187 aa15.98■□□□□ 0.15
CCDC9-203ENST00000596938 EFCAB6Q5THR3 1501 aa15.97■□□□□ 0.15
CCDC9-203ENST00000596938 ARHGAP23Q9P227 1491 aa15.97■□□□□ 0.15
CCDC9-203ENST00000596938 NUP155O75694 1391 aa15.96■□□□□ 0.15
CCDC9-203ENST00000596938 TMEM2Q9UHN6 1383 aa15.96■□□□□ 0.15
CCDC9-203ENST00000596938 SLIT1O75093 1534 aa15.95■□□□□ 0.14
CCDC9-203ENST00000596938 SCAF11Q99590 1463 aaKnown RBP15.94■□□□□ 0.14
CCDC9-203ENST00000596938 UNC13BO14795 1591 aa15.92■□□□□ 0.14
CCDC9-203ENST00000596938 UBR1Q8IWV7 1749 aa15.92■□□□□ 0.14
CCDC9-203ENST00000596938 SYNMO15061 1565 aa15.92■□□□□ 0.14
CCDC9-203ENST00000596938 CFAP65Q6ZU64 1925 aaKnown RBP15.91■□□□□ 0.14
CCDC9-203ENST00000596938 POLR1AO95602 1720 aaPredicted RBP15.91■□□□□ 0.14
CCDC9-203ENST00000596938 CPS1P31327 1500 aa15.9■□□□□ 0.14
CCDC9-203ENST00000596938 UBAP1LF5GYI3 381 aa15.9■□□□□ 0.14
CCDC9-203ENST00000596938 HDGFP51858 240 aaKnown RBP15.9■□□□□ 0.14
CCDC9-203ENST00000596938 PIK3C2BO00750 1634 aa15.9■□□□□ 0.14
CCDC9-203ENST00000596938 TET3O43151 1660 aa15.89■□□□□ 0.13
CCDC9-203ENST00000596938 NAIPQ13075 1403 aa15.89■□□□□ 0.13
CCDC9-203ENST00000596938 KDM5AP29375 1690 aaKnown RBP15.88■□□□□ 0.13
CCDC9-203ENST00000596938 IQGAP3Q86VI3 1631 aa15.86■□□□□ 0.13
CCDC9-203ENST00000596938 IQGAP1P46940 1657 aa15.86■□□□□ 0.13
CCDC9-203ENST00000596938 TOM1O60784 492 aa15.86■□□□□ 0.13
CCDC9-203ENST00000596938 HFM1A2PYH4 1435 aa15.85■□□□□ 0.13
CCDC9-203ENST00000596938 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.85■□□□□ 0.13
CCDC9-203ENST00000596938 ADGRB3O60242 1522 aa15.84■□□□□ 0.13
CCDC9-203ENST00000596938 CHGAP10645 457 aaKnown RBP15.84■□□□□ 0.13
CCDC9-203ENST00000596938 GCC2Q8IWJ2 1684 aa15.83■□□□□ 0.13
CCDC9-203ENST00000596938 SLC26A8Q96RN1 970 aa15.83■□□□□ 0.12
CCDC9-203ENST00000596938 ZFYVE9O95405 1425 aa15.83■□□□□ 0.12
CCDC9-203ENST00000596938 KCNA6P17658 529 aa15.82■□□□□ 0.12
CCDC9-203ENST00000596938 E9PCH4 1651 aa15.81■□□□□ 0.12
CCDC9-203ENST00000596938 PPP1R15AO75807 674 aaPredicted RBP15.81■□□□□ 0.12
CCDC9-203ENST00000596938 TRIM52Q96A61 297 aa15.81■□□□□ 0.12
CCDC9-203ENST00000596938 BCANQ96GW7 911 aa15.81■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 113.5 ms