RNA–Protein interactions for RNA: ENST00000595974.5

TRIM28-206, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-206ENST00000595974 ZMYM3Q14202 1370 aa25.07■■□□□ 1.6
TRIM28-206ENST00000595974 UHRF1BP1Q6BDS2 1440 aa25.07■■□□□ 1.6
TRIM28-206ENST00000595974 KIF15Q9NS87 1388 aa25.05■■□□□ 1.6
TRIM28-206ENST00000595974 ZC3H13Q5T200 1668 aaKnown RBP25.04■■□□□ 1.6
TRIM28-206ENST00000595974 ERBINQ96RT1 1412 aa25.03■■□□□ 1.6
TRIM28-206ENST00000595974 MROH1Q8NDA8 1641 aa25.01■■□□□ 1.59
TRIM28-206ENST00000595974 FAM50AQ14320 339 aaKnown RBP25.01■■□□□ 1.59
TRIM28-206ENST00000595974 ANKRD30AQ9BXX3 1397 aa25.01■■□□□ 1.59
TRIM28-206ENST00000595974 ADGRL2O95490 1459 aa25.01■■□□□ 1.59
TRIM28-206ENST00000595974 PTPRKQ15262 1439 aa25■■□□□ 1.59
TRIM28-206ENST00000595974 HSPA2P54652 639 aa24.99■■□□□ 1.59
TRIM28-206ENST00000595974 MYO3AQ8NEV4 1616 aa24.98■■□□□ 1.59
TRIM28-206ENST00000595974 ZNF142P52746 1687 aaPredicted RBP24.97■■□□□ 1.59
TRIM28-206ENST00000595974 DEPDC5O75140 1603 aa24.97■■□□□ 1.59
TRIM28-206ENST00000595974 PRDM15P57071 1507 aaPredicted RBP24.96■■□□□ 1.59
TRIM28-206ENST00000595974 PZPP20742 1482 aa24.96■■□□□ 1.59
TRIM28-206ENST00000595974 NCOA1Q15788 1441 aa24.96■■□□□ 1.59
TRIM28-206ENST00000595974 WASHC2CQ9Y4E1 1318 aa24.96■■□□□ 1.59
TRIM28-206ENST00000595974 RRP7BPQ9NSQ0 103 aa24.96■■□□□ 1.59
TRIM28-206ENST00000595974 ABCC3O15438 1527 aa24.96■■□□□ 1.59
TRIM28-206ENST00000595974 CEP152O94986 1710 aa24.95■■□□□ 1.59
TRIM28-206ENST00000595974 CHIC2Q9UKJ5 165 aa24.94■■□□□ 1.58
TRIM28-206ENST00000595974 PPARGC1BQ86YN6 1023 aaKnown RBP24.92■■□□□ 1.58
TRIM28-206ENST00000595974 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP24.92■■□□□ 1.58
TRIM28-206ENST00000595974 CAMSAP1Q5T5Y3 1602 aa24.91■■□□□ 1.58
TRIM28-206ENST00000595974 STRCQ7RTU9 1775 aa24.9■■□□□ 1.58
TRIM28-206ENST00000595974 CEP170BQ9Y4F5 1589 aaPredicted RBP24.9■■□□□ 1.58
TRIM28-206ENST00000595974 TNRQ92752 1358 aa24.85■■□□□ 1.57
TRIM28-206ENST00000595974 ROCK1Q13464 1354 aa24.84■■□□□ 1.57
TRIM28-206ENST00000595974 RRBP1Q9P2E9 1410 aaKnown RBP24.84■■□□□ 1.57
TRIM28-206ENST00000595974 SPATA31D1Q6ZQQ2 1576 aa24.84■■□□□ 1.57
TRIM28-206ENST00000595974 A2ML1A8K2U0 1454 aa24.83■■□□□ 1.57
TRIM28-206ENST00000595974 ANKRD50Q9ULJ7 1429 aa24.83■■□□□ 1.57
TRIM28-206ENST00000595974 VWDEQ8N2E2 1590 aa24.83■■□□□ 1.57
TRIM28-206ENST00000595974 KANK1Q14678 1352 aa24.82■■□□□ 1.56
TRIM28-206ENST00000595974 CFAP65Q6ZU64 1925 aaKnown RBP24.82■■□□□ 1.56
TRIM28-206ENST00000595974 FBXO31Q5XUX0 539 aaPredicted RBP24.81■■□□□ 1.56
TRIM28-206ENST00000595974 LMTK2Q8IWU2 1503 aa24.81■■□□□ 1.56
TRIM28-206ENST00000595974 ARHGAP31Q2M1Z3 1444 aa24.8■■□□□ 1.56
TRIM28-206ENST00000595974 ERVK-7P63135 1459 aa24.8■■□□□ 1.56
TRIM28-206ENST00000595974 PLA2R1Q13018 1463 aa24.79■■□□□ 1.56
TRIM28-206ENST00000595974 NLRP1Q9C000 1473 aa24.79■■□□□ 1.56
TRIM28-206ENST00000595974 UNC13BO14795 1591 aa24.76■■□□□ 1.55
TRIM28-206ENST00000595974 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.76■■□□□ 1.55
TRIM28-206ENST00000595974 DMRT2Q9Y5R5 561 aa24.76■■□□□ 1.55
TRIM28-206ENST00000595974 PTPRTO14522 1441 aa24.74■■□□□ 1.55
TRIM28-206ENST00000595974 EFCAB6Q5THR3 1501 aa24.74■■□□□ 1.55
TRIM28-206ENST00000595974 ITGAEP38570 1179 aa24.72■■□□□ 1.55
TRIM28-206ENST00000595974 POLR1AO95602 1720 aaPredicted RBP24.72■■□□□ 1.55
TRIM28-206ENST00000595974 UGGT1Q9NYU2 1555 aa24.71■■□□□ 1.55
TRIM28-206ENST00000595974 TET3O43151 1660 aa24.7■■□□□ 1.54
TRIM28-206ENST00000595974 GCC2Q8IWJ2 1684 aa24.69■■□□□ 1.54
TRIM28-206ENST00000595974 IQGAP3Q86VI3 1631 aa24.66■■□□□ 1.54
TRIM28-206ENST00000595974 PKD2Q13563 968 aa24.66■■□□□ 1.54
TRIM28-206ENST00000595974 UBR1Q8IWV7 1749 aa24.66■■□□□ 1.54
TRIM28-206ENST00000595974 RPRD2Q5VT52 1461 aaKnown RBP24.65■■□□□ 1.54
TRIM28-206ENST00000595974 NCKAP5LQ9HCH0 1330 aa24.62■■□□□ 1.53
TRIM28-206ENST00000595974 THEMISQ8N1K5 641 aaPredicted RBP24.62■■□□□ 1.53
TRIM28-206ENST00000595974 SYNMO15061 1565 aa24.62■■□□□ 1.53
TRIM28-206ENST00000595974 NEURL4Q96JN8 1562 aa24.61■■□□□ 1.53
TRIM28-206ENST00000595974 KDM5AP29375 1690 aaKnown RBP24.61■■□□□ 1.53
TRIM28-206ENST00000595974 PIK3C2BO00750 1634 aa24.6■■□□□ 1.53
TRIM28-206ENST00000595974 NOS1P29475 1434 aa24.6■■□□□ 1.53
TRIM28-206ENST00000595974 E9PCH4 1651 aa24.57■■□□□ 1.52
TRIM28-206ENST00000595974 NAIPQ13075 1403 aa24.57■■□□□ 1.52
TRIM28-206ENST00000595974 HFM1A2PYH4 1435 aa24.55■■□□□ 1.52
TRIM28-206ENST00000595974 NUP155O75694 1391 aa24.54■■□□□ 1.52
TRIM28-206ENST00000595974 MED14O60244 1454 aa24.53■■□□□ 1.52
TRIM28-206ENST00000595974 SLIT1O75093 1534 aa24.53■■□□□ 1.52
TRIM28-206ENST00000595974 ANKLE2Q86XL3 938 aa24.53■■□□□ 1.52
TRIM28-206ENST00000595974 LTBP4Q8N2S1 1624 aa24.53■■□□□ 1.52
TRIM28-206ENST00000595974 IQGAP1P46940 1657 aa24.52■■□□□ 1.52
TRIM28-206ENST00000595974 ARHGAP23Q9P227 1491 aa24.51■■□□□ 1.51
TRIM28-206ENST00000595974 ADGRB3O60242 1522 aa24.51■■□□□ 1.51
TRIM28-206ENST00000595974 ILDR1Q86SU0 546 aaPredicted RBP24.5■■□□□ 1.51
TRIM28-206ENST00000595974 CERKQ8TCT0 537 aa24.5■■□□□ 1.51
TRIM28-206ENST00000595974 NPHP4O75161 1426 aaPredicted RBP24.49■■□□□ 1.51
TRIM28-206ENST00000595974 FBXO41Q8TF61 875 aa24.48■■□□□ 1.51
TRIM28-206ENST00000595974 SLC52A1Q9NWF4 448 aa24.48■■□□□ 1.51
TRIM28-206ENST00000595974 SCAF11Q99590 1463 aaKnown RBP24.47■■□□□ 1.51
TRIM28-206ENST00000595974 IDI1Q13907 227 aa24.47■■□□□ 1.51
TRIM28-206ENST00000595974 MYO5BQ9ULV0 1848 aa24.45■■□□□ 1.5
TRIM28-206ENST00000595974 SPHKAPQ2M3C7 1700 aa24.45■■□□□ 1.5
TRIM28-206ENST00000595974 STAG3Q9UJ98 1225 aa24.45■■□□□ 1.5
TRIM28-206ENST00000595974 IQSEC2Q5JU85 1478 aa24.44■■□□□ 1.5
TRIM28-206ENST00000595974 TMEM2Q9UHN6 1383 aa24.43■■□□□ 1.5
TRIM28-206ENST00000595974 ZNF335Q9H4Z2 1342 aaPredicted RBP24.43■■□□□ 1.5
TRIM28-206ENST00000595974 TMEM131LA2VDJ0 1609 aa24.41■■□□□ 1.5
TRIM28-206ENST00000595974 EID1Q9Y6B2 187 aa24.39■■□□□ 1.49
TRIM28-206ENST00000595974 CPS1P31327 1500 aa24.37■■□□□ 1.49
TRIM28-206ENST00000595974 TXNDC2Q86VQ3 553 aa24.37■■□□□ 1.49
TRIM28-206ENST00000595974 LTKP29376 864 aa24.36■■□□□ 1.49
TRIM28-206ENST00000595974 TRPM2O94759 1503 aa24.32■■□□□ 1.48
TRIM28-206ENST00000595974 ZFYVE9O95405 1425 aa24.32■■□□□ 1.48
TRIM28-206ENST00000595974 TRIM52Q96A61 297 aa24.31■■□□□ 1.48
TRIM28-206ENST00000595974 STRCP1A6NGW2 1772 aa24.31■■□□□ 1.48
TRIM28-206ENST00000595974 CLTCL1P53675 1640 aa24.28■■□□□ 1.48
TRIM28-206ENST00000595974 RIMS2Q9UQ26 1411 aa24.28■■□□□ 1.48
TRIM28-206ENST00000595974 KIF1BO60333 1816 aa24.26■■□□□ 1.47
TRIM28-206ENST00000595974 CHGAP10645 457 aaKnown RBP24.25■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms