RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 DMRT2Q9Y5R5 561 aa23.62■■□□□ 1.37
TRIM28-203ENST00000593582 DUOX2Q9NRD8 1548 aa23.62■■□□□ 1.37
TRIM28-203ENST00000593582 KIF15Q9NS87 1388 aa23.62■■□□□ 1.37
TRIM28-203ENST00000593582 DNMT1P26358 1616 aaKnown RBP23.62■■□□□ 1.37
TRIM28-203ENST00000593582 CROCC2H7BZ55 1655 aa23.61■■□□□ 1.37
TRIM28-203ENST00000593582 RRP7BPQ9NSQ0 103 aa23.61■■□□□ 1.37
TRIM28-203ENST00000593582 FAM50AQ14320 339 aaKnown RBP23.6■■□□□ 1.37
TRIM28-203ENST00000593582 EIF2AK4Q9P2K8 1649 aaKnown RBP23.59■■□□□ 1.37
TRIM28-203ENST00000593582 RNF17Q9BXT8 1623 aaKnown RBP23.59■■□□□ 1.37
TRIM28-203ENST00000593582 ILDR1Q86SU0 546 aaPredicted RBP23.58■■□□□ 1.37
TRIM28-203ENST00000593582 CHIC2Q9UKJ5 165 aa23.57■■□□□ 1.36
TRIM28-203ENST00000593582 PZPP20742 1482 aa23.56■■□□□ 1.36
TRIM28-203ENST00000593582 ANKRD30AQ9BXX3 1397 aa23.56■■□□□ 1.36
TRIM28-203ENST00000593582 ERBINQ96RT1 1412 aa23.56■■□□□ 1.36
TRIM28-203ENST00000593582 FBXO31Q5XUX0 539 aaPredicted RBP23.55■■□□□ 1.36
TRIM28-203ENST00000593582 STRCQ7RTU9 1775 aa23.54■■□□□ 1.36
TRIM28-203ENST00000593582 MYO3AQ8NEV4 1616 aa23.54■■□□□ 1.36
TRIM28-203ENST00000593582 TNRQ92752 1358 aa23.52■■□□□ 1.36
TRIM28-203ENST00000593582 CEP170BQ9Y4F5 1589 aaPredicted RBP23.52■■□□□ 1.36
TRIM28-203ENST00000593582 NCOA1Q15788 1441 aa23.52■■□□□ 1.36
TRIM28-203ENST00000593582 ABCC3O15438 1527 aa23.52■■□□□ 1.36
TRIM28-203ENST00000593582 CAMSAP1Q5T5Y3 1602 aa23.51■■□□□ 1.35
TRIM28-203ENST00000593582 ZNF142P52746 1687 aaPredicted RBP23.5■■□□□ 1.35
TRIM28-203ENST00000593582 ZC3H13Q5T200 1668 aaKnown RBP23.5■■□□□ 1.35
TRIM28-203ENST00000593582 MROH1Q8NDA8 1641 aa23.49■■□□□ 1.35
TRIM28-203ENST00000593582 PPARGC1BQ86YN6 1023 aaKnown RBP23.49■■□□□ 1.35
TRIM28-203ENST00000593582 PTPRTO14522 1441 aa23.49■■□□□ 1.35
TRIM28-203ENST00000593582 A2ML1A8K2U0 1454 aa23.49■■□□□ 1.35
TRIM28-203ENST00000593582 ADGRL2O95490 1459 aa23.47■■□□□ 1.35
TRIM28-203ENST00000593582 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.46■■□□□ 1.35
TRIM28-203ENST00000593582 PRDM15P57071 1507 aaPredicted RBP23.45■■□□□ 1.34
TRIM28-203ENST00000593582 PLA2R1Q13018 1463 aa23.45■■□□□ 1.34
TRIM28-203ENST00000593582 FBXO41Q8TF61 875 aa23.45■■□□□ 1.34
TRIM28-203ENST00000593582 KANK1Q14678 1352 aa23.44■■□□□ 1.34
TRIM28-203ENST00000593582 NCKAP5LQ9HCH0 1330 aa23.44■■□□□ 1.34
TRIM28-203ENST00000593582 PKD2Q13563 968 aa23.44■■□□□ 1.34
TRIM28-203ENST00000593582 NLRP1Q9C000 1473 aa23.43■■□□□ 1.34
TRIM28-203ENST00000593582 CERKQ8TCT0 537 aa23.41■■□□□ 1.34
TRIM28-203ENST00000593582 DEPDC5O75140 1603 aa23.41■■□□□ 1.34
TRIM28-203ENST00000593582 CEP152O94986 1710 aa23.4■■□□□ 1.34
TRIM28-203ENST00000593582 ERVK-7P63135 1459 aa23.39■■□□□ 1.34
TRIM28-203ENST00000593582 THEMISQ8N1K5 641 aaPredicted RBP23.39■■□□□ 1.33
TRIM28-203ENST00000593582 SPATA31D1Q6ZQQ2 1576 aa23.39■■□□□ 1.33
TRIM28-203ENST00000593582 ARHGAP31Q2M1Z3 1444 aa23.38■■□□□ 1.33
TRIM28-203ENST00000593582 ANKRD50Q9ULJ7 1429 aa23.38■■□□□ 1.33
TRIM28-203ENST00000593582 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.37■■□□□ 1.335e-11■□□□□ 10
TRIM28-203ENST00000593582 UGGT1Q9NYU2 1555 aa23.35■■□□□ 1.33
TRIM28-203ENST00000593582 ITGAEP38570 1179 aa23.34■■□□□ 1.33
TRIM28-203ENST00000593582 ROCK1Q13464 1354 aa23.34■■□□□ 1.33
TRIM28-203ENST00000593582 LMTK2Q8IWU2 1503 aa23.33■■□□□ 1.32
TRIM28-203ENST00000593582 ANKLE2Q86XL3 938 aa23.32■■□□□ 1.32
TRIM28-203ENST00000593582 VWDEQ8N2E2 1590 aa23.31■■□□□ 1.32
TRIM28-203ENST00000593582 CFAP65Q6ZU64 1925 aaKnown RBP23.27■■□□□ 1.32
TRIM28-203ENST00000593582 LTBP4Q8N2S1 1624 aa23.26■■□□□ 1.31
TRIM28-203ENST00000593582 RRBP1Q9P2E9 1410 aaKnown RBP23.25■■□□□ 1.31
TRIM28-203ENST00000593582 EFCAB6Q5THR3 1501 aa23.25■■□□□ 1.31
TRIM28-203ENST00000593582 ZNF335Q9H4Z2 1342 aaPredicted RBP23.25■■□□□ 1.31
TRIM28-203ENST00000593582 POLR1AO95602 1720 aaPredicted RBP23.25■■□□□ 1.31
TRIM28-203ENST00000593582 NEURL4Q96JN8 1562 aa23.23■■□□□ 1.31
TRIM28-203ENST00000593582 STAG3Q9UJ98 1225 aa23.21■■□□□ 1.31
TRIM28-203ENST00000593582 UNC13BO14795 1591 aa23.2■■□□□ 1.3
TRIM28-203ENST00000593582 MED14O60244 1454 aa23.2■■□□□ 1.3
TRIM28-203ENST00000593582 RPRD2Q5VT52 1461 aaKnown RBP23.2■■□□□ 1.3
TRIM28-203ENST00000593582 UBR1Q8IWV7 1749 aa23.19■■□□□ 1.3
TRIM28-203ENST00000593582 NPHP4O75161 1426 aaPredicted RBP23.19■■□□□ 1.3
TRIM28-203ENST00000593582 IDI1Q13907 227 aa23.19■■□□□ 1.3
TRIM28-203ENST00000593582 NOS1P29475 1434 aa23.18■■□□□ 1.3
TRIM28-203ENST00000593582 SLC52A1Q9NWF4 448 aa23.18■■□□□ 1.3
TRIM28-203ENST00000593582 IQSEC2Q5JU85 1478 aa23.17■■□□□ 1.3
TRIM28-203ENST00000593582 TET3O43151 1660 aa23.16■■□□□ 1.3
TRIM28-203ENST00000593582 EID1Q9Y6B2 187 aa23.16■■□□□ 1.3
TRIM28-203ENST00000593582 PIK3C2BO00750 1634 aa23.15■■□□□ 1.3
TRIM28-203ENST00000593582 NUP155O75694 1391 aa23.15■■□□□ 1.3
TRIM28-203ENST00000593582 SYNMO15061 1565 aa23.15■■□□□ 1.3
TRIM28-203ENST00000593582 TXNDC2Q86VQ3 553 aa23.15■■□□□ 1.3
TRIM28-203ENST00000593582 SLIT1O75093 1534 aa23.14■■□□□ 1.3
TRIM28-203ENST00000593582 SCAF11Q99590 1463 aaKnown RBP23.14■■□□□ 1.29
TRIM28-203ENST00000593582 ARHGAP23Q9P227 1491 aa23.14■■□□□ 1.29
TRIM28-203ENST00000593582 TMEM2Q9UHN6 1383 aa23.13■■□□□ 1.29
TRIM28-203ENST00000593582 IQGAP1P46940 1657 aa23.13■■□□□ 1.29
TRIM28-203ENST00000593582 LTKP29376 864 aa23.12■■□□□ 1.29
TRIM28-203ENST00000593582 GCC2Q8IWJ2 1684 aa23.11■■□□□ 1.29
TRIM28-203ENST00000593582 IQGAP3Q86VI3 1631 aa23.11■■□□□ 1.29
TRIM28-203ENST00000593582 KDM5AP29375 1690 aaKnown RBP23.1■■□□□ 1.29
TRIM28-203ENST00000593582 CPS1P31327 1500 aa23.08■■□□□ 1.29
TRIM28-203ENST00000593582 ADGRB3O60242 1522 aa23.08■■□□□ 1.28
TRIM28-203ENST00000593582 NAIPQ13075 1403 aa23.07■■□□□ 1.28
TRIM28-203ENST00000593582 E9PCH4 1651 aa23.05■■□□□ 1.28
TRIM28-203ENST00000593582 UBAP1LF5GYI3 381 aa23.03■■□□□ 1.28
TRIM28-203ENST00000593582 HFM1A2PYH4 1435 aa23.02■■□□□ 1.28
TRIM28-203ENST00000593582 CHGAP10645 457 aaKnown RBP23■■□□□ 1.27
TRIM28-203ENST00000593582 HDGFP51858 240 aaKnown RBP23■■□□□ 1.27
TRIM28-203ENST00000593582 PPP1R15AO75807 674 aaPredicted RBP22.96■■□□□ 1.27
TRIM28-203ENST00000593582 TRIM52Q96A61 297 aa22.96■■□□□ 1.27
TRIM28-203ENST00000593582 BCANQ96GW7 911 aa22.96■■□□□ 1.27
TRIM28-203ENST00000593582 TMEM131LA2VDJ0 1609 aa22.96■■□□□ 1.27
TRIM28-203ENST00000593582 RIMS2Q9UQ26 1411 aa22.95■■□□□ 1.26
TRIM28-203ENST00000593582 ZFYVE9O95405 1425 aa22.94■■□□□ 1.26
TRIM28-203ENST00000593582 TOM1O60784 492 aa22.94■■□□□ 1.26
TRIM28-203ENST00000593582 SLC26A8Q96RN1 970 aa22.94■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms