RNA–Protein interactions for RNA: ENST00000570380.5

CTDNEP1-202, Transcript of CTD nuclear envelope phosphatase 1, humanhuman

TSL 5

Gene CTDNEP1, Length 506 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1-202ENST00000570380 FBXO31Q5XUX0 539 aaPredicted RBP17.24■□□□□ 0.35
CTDNEP1-202ENST00000570380 CFDP1Q9UEE9 299 aaPredicted RBP17.23■□□□□ 0.35
CTDNEP1-202ENST00000570380 TNRQ92752 1358 aa17.23■□□□□ 0.35
CTDNEP1-202ENST00000570380 ANKLE2Q86XL3 938 aa17.22■□□□□ 0.35
CTDNEP1-202ENST00000570380 DEPDC5O75140 1603 aa17.21■□□□□ 0.35
CTDNEP1-202ENST00000570380 FYCO1Q9BQS8 1478 aa17.21■□□□□ 0.35
CTDNEP1-202ENST00000570380 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.21■□□□□ 0.354e-17■□□□□ 10.5
CTDNEP1-202ENST00000570380 SENP3Q9H4L4 574 aaPredicted RBP17.21■□□□□ 0.35
CTDNEP1-202ENST00000570380 MED14O60244 1454 aa17.2■□□□□ 0.34
CTDNEP1-202ENST00000570380 IQGAP1P46940 1657 aa17.2■□□□□ 0.34
CTDNEP1-202ENST00000570380 PZPP20742 1482 aa17.19■□□□□ 0.34
CTDNEP1-202ENST00000570380 RGS17Q9UGC6 210 aaPredicted RBP17.19■□□□□ 0.34
CTDNEP1-202ENST00000570380 NPHP4O75161 1426 aaPredicted RBP17.19■□□□□ 0.34
CTDNEP1-202ENST00000570380 DHX29Q7Z478 1369 aaKnown RBP17.17■□□□□ 0.34
CTDNEP1-202ENST00000570380 CCNB3Q8WWL7 1395 aa17.17■□□□□ 0.34
CTDNEP1-202ENST00000570380 LRRC7Q96NW7 1537 aa17.17■□□□□ 0.34
CTDNEP1-202ENST00000570380 THEMISQ8N1K5 641 aaPredicted RBP17.17■□□□□ 0.34
CTDNEP1-202ENST00000570380 UGGT1Q9NYU2 1555 aa17.17■□□□□ 0.34
CTDNEP1-202ENST00000570380 RNF17Q9BXT8 1623 aaKnown RBP17.17■□□□□ 0.34
CTDNEP1-202ENST00000570380 MBD5Q9P267 1494 aa17.16■□□□□ 0.34
CTDNEP1-202ENST00000570380 ZNF644Q9H582 1327 aaPredicted RBP17.16■□□□□ 0.34
CTDNEP1-202ENST00000570380 KDM5DQ9BY66 1539 aa17.16■□□□□ 0.34
CTDNEP1-202ENST00000570380 RTEL1-TNFRSF6BF6WH68 1400 aa17.15■□□□□ 0.34
CTDNEP1-202ENST00000570380 MIA2Q96PC5 1412 aa17.14■□□□□ 0.33
CTDNEP1-202ENST00000570380 NLRP1Q9C000 1473 aa17.14■□□□□ 0.33
CTDNEP1-202ENST00000570380 KIF3BO15066 747 aa17.14■□□□□ 0.33
CTDNEP1-202ENST00000570380 FAM135AQ9P2D6 1515 aa17.14■□□□□ 0.33
CTDNEP1-202ENST00000570380 SYNMO15061 1565 aa17.14■□□□□ 0.33
CTDNEP1-202ENST00000570380 TIAM1Q13009 1591 aa17.12■□□□□ 0.33
CTDNEP1-202ENST00000570380 XIRP1Q702N8 1843 aaKnown RBP17.12■□□□□ 0.33
CTDNEP1-202ENST00000570380 ZC3H13Q5T200 1668 aaKnown RBP17.11■□□□□ 0.33
CTDNEP1-202ENST00000570380 WASHC2CQ9Y4E1 1318 aa17.11■□□□□ 0.33
CTDNEP1-202ENST00000570380 CFAP65Q6ZU64 1925 aaKnown RBP17.08■□□□□ 0.33
CTDNEP1-202ENST00000570380 MTUS2Q5JR59 1369 aa17.07■□□□□ 0.32
CTDNEP1-202ENST00000570380 POTEAQ6S8J7 498 aa17.06■□□□□ 0.32
CTDNEP1-202ENST00000570380 UBR1Q8IWV7 1749 aa17.04■□□□□ 0.32
CTDNEP1-202ENST00000570380 CCDC141Q6ZP82 1450 aa17.04■□□□□ 0.32
CTDNEP1-202ENST00000570380 SETD1AO15047 1707 aaKnown RBP17.02■□□□□ 0.32
CTDNEP1-202ENST00000570380 EHBP1L1Q8N3D4 1523 aa17.01■□□□□ 0.31
CTDNEP1-202ENST00000570380 ABCC3O15438 1527 aa17■□□□□ 0.31
CTDNEP1-202ENST00000570380 ERVK-7P63135 1459 aa16.99■□□□□ 0.31
CTDNEP1-202ENST00000570380 CAMSAP2Q08AD1 1489 aa16.99■□□□□ 0.31
CTDNEP1-202ENST00000570380 SCAF11Q99590 1463 aaKnown RBP16.99■□□□□ 0.31
CTDNEP1-202ENST00000570380 FAM135BQ49AJ0 1406 aa16.98■□□□□ 0.31
CTDNEP1-202ENST00000570380 CHIC1Q5VXU3 224 aa16.98■□□□□ 0.31
CTDNEP1-202ENST00000570380 CEP162Q5TB80 1403 aa16.97■□□□□ 0.31
CTDNEP1-202ENST00000570380 CEP152O94986 1710 aa16.97■□□□□ 0.31
CTDNEP1-202ENST00000570380 LTKP29376 864 aa16.97■□□□□ 0.31
CTDNEP1-202ENST00000570380 NCOA2Q15596 1464 aa16.97■□□□□ 0.31
CTDNEP1-202ENST00000570380 RSPH4AQ5TD94 716 aa16.96■□□□□ 0.31
CTDNEP1-202ENST00000570380 ROBO1Q9Y6N7 1651 aa16.96■□□□□ 0.31
CTDNEP1-202ENST00000570380 ARHGEF5Q12774 1597 aa16.95■□□□□ 0.3
CTDNEP1-202ENST00000570380 ARHGAP23Q9P227 1491 aa16.95■□□□□ 0.3
CTDNEP1-202ENST00000570380 TXNDC2Q86VQ3 553 aa16.94■□□□□ 0.3
CTDNEP1-202ENST00000570380 MROH1Q8NDA8 1641 aa16.94■□□□□ 0.3
CTDNEP1-202ENST00000570380 SLIT1O75093 1534 aa16.94■□□□□ 0.3
CTDNEP1-202ENST00000570380 EIF2AK4Q9P2K8 1649 aaKnown RBP16.92■□□□□ 0.3
CTDNEP1-202ENST00000570380 TSPY4P0CV99 314 aa16.9■□□□□ 0.3
CTDNEP1-202ENST00000570380 TSPY10P0CW01 314 aa16.9■□□□□ 0.3
CTDNEP1-202ENST00000570380 TMEM94Q12767 1356 aa16.89■□□□□ 0.3
CTDNEP1-202ENST00000570380 MAP3K1Q13233 1512 aa16.88■□□□□ 0.29
CTDNEP1-202ENST00000570380 MAST1Q9Y2H9 1570 aa16.88■□□□□ 0.29
CTDNEP1-202ENST00000570380 PIK3C2BO00750 1634 aa16.88■□□□□ 0.29
CTDNEP1-202ENST00000570380 PHLPP1O60346 1717 aa16.87■□□□□ 0.29
CTDNEP1-202ENST00000570380 EID1Q9Y6B2 187 aa16.86■□□□□ 0.29
CTDNEP1-202ENST00000570380 RBM33Q96EV2 1170 aaKnown RBP16.85■□□□□ 0.29
CTDNEP1-202ENST00000570380 KCNA6P17658 529 aa16.83■□□□□ 0.28
CTDNEP1-202ENST00000570380 LRRC9Q6ZRR7 1453 aa16.83■□□□□ 0.28
CTDNEP1-202ENST00000570380 PROSER2Q86WR7 435 aaPredicted RBP16.83■□□□□ 0.28
CTDNEP1-202ENST00000570380 TMEM2Q9UHN6 1383 aa16.83■□□□□ 0.28
CTDNEP1-202ENST00000570380 TET3O43151 1660 aa16.82■□□□□ 0.28
CTDNEP1-202ENST00000570380 UPF1Q92900 1129 aaKnown RBP eCLIP16.82■□□□□ 0.28
CTDNEP1-202ENST00000570380 KDM5AP29375 1690 aaKnown RBP16.81■□□□□ 0.28
CTDNEP1-202ENST00000570380 ARHGAP31Q2M1Z3 1444 aa16.81■□□□□ 0.28
CTDNEP1-202ENST00000570380 PRDM15P57071 1507 aaPredicted RBP16.8■□□□□ 0.28
CTDNEP1-202ENST00000570380 JCADQ9P266 1359 aa16.8■□□□□ 0.28
CTDNEP1-202ENST00000570380 COL16A1Q07092 1604 aaPredicted RBP16.79■□□□□ 0.28
CTDNEP1-202ENST00000570380 SLC26A8Q96RN1 970 aa16.79■□□□□ 0.28
CTDNEP1-202ENST00000570380 NWD1Q149M9 1564 aa16.79■□□□□ 0.28
CTDNEP1-202ENST00000570380 DUOX2Q9NRD8 1548 aa16.79■□□□□ 0.28
CTDNEP1-202ENST00000570380 EFCAB6Q5THR3 1501 aa16.78■□□□□ 0.28
CTDNEP1-202ENST00000570380 SLAIN2Q9P270 581 aa16.77■□□□□ 0.28
CTDNEP1-202ENST00000570380 NKTRP30414 1462 aaKnown RBP16.77■□□□□ 0.28
CTDNEP1-202ENST00000570380 LRP6O75581 1613 aa16.77■□□□□ 0.27
CTDNEP1-202ENST00000570380 STAG3Q9UJ98 1225 aa16.76■□□□□ 0.27
CTDNEP1-202ENST00000570380 MSH6P52701 1360 aa16.76■□□□□ 0.27
CTDNEP1-202ENST00000570380 CHD2O14647 1828 aaKnown RBP16.75■□□□□ 0.27
CTDNEP1-202ENST00000570380 TRIM52Q96A61 297 aa16.75■□□□□ 0.27
CTDNEP1-202ENST00000570380 IDI1Q13907 227 aa16.74■□□□□ 0.27
CTDNEP1-202ENST00000570380 ZNF772Q68DY9 489 aaPredicted RBP16.72■□□□□ 0.27
CTDNEP1-202ENST00000570380 SHPRHQ149N8 1683 aa16.72■□□□□ 0.27
CTDNEP1-202ENST00000570380 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.71■□□□□ 0.279e-7■■□□□ 12.2
CTDNEP1-202ENST00000570380 SPATA31A6Q5VVP1 1343 aa16.7■□□□□ 0.26
CTDNEP1-202ENST00000570380 FGD6Q6ZV73 1430 aa16.7■□□□□ 0.26
CTDNEP1-202ENST00000570380 MYO5BQ9ULV0 1848 aa16.7■□□□□ 0.26
CTDNEP1-202ENST00000570380 ERBINQ96RT1 1412 aa16.7■□□□□ 0.26
CTDNEP1-202ENST00000570380 CROCC2H7BZ55 1655 aa16.69■□□□□ 0.26
CTDNEP1-202ENST00000570380 KIF15Q9NS87 1388 aa16.69■□□□□ 0.26
CTDNEP1-202ENST00000570380 MEX3CQ5U5Q3 659 aaKnown RBP16.69■□□□□ 0.26
CTDNEP1-202ENST00000570380 ADGRB3O60242 1522 aa16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms