RNA–Protein interactions for RNA: ENST00000569252.5

USB1-215, Transcript of U6 snRNA biogenesis phosphodiesterase 1, humanhuman

TSL 4

Gene USB1, Length 573 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USB1-215ENST00000569252 PLXNC1O60486 1568 aa24.25■■□□□ 1.47
USB1-215ENST00000569252 GGT6Q6P531 493 aa24.25■■□□□ 1.47
USB1-215ENST00000569252 A2MP01023 1474 aa24.25■■□□□ 1.47
USB1-215ENST00000569252 MBD5Q9P267 1494 aa24.23■■□□□ 1.47
USB1-215ENST00000569252 CCDC141Q6ZP82 1450 aa24.22■■□□□ 1.47
USB1-215ENST00000569252 NPATQ14207 1427 aa24.22■■□□□ 1.47
USB1-215ENST00000569252 PTPRKQ15262 1439 aa24.21■■□□□ 1.47
USB1-215ENST00000569252 CEP170BQ9Y4F5 1589 aaPredicted RBP24.2■■□□□ 1.46
USB1-215ENST00000569252 ARHGEF5Q12774 1597 aa24.19■■□□□ 1.46
USB1-215ENST00000569252 ZNF142P52746 1687 aaPredicted RBP24.18■■□□□ 1.46
USB1-215ENST00000569252 CHIC2Q9UKJ5 165 aa24.18■■□□□ 1.46
USB1-215ENST00000569252 SOCS7O14512 581 aa24.17■■□□□ 1.46
USB1-215ENST00000569252 DAPK1P53355 1430 aa24.17■■□□□ 1.46
USB1-215ENST00000569252 ABCC5O15440 1437 aa24.16■■□□□ 1.46
USB1-215ENST00000569252 UBAP1LF5GYI3 381 aa24.14■■□□□ 1.45
USB1-215ENST00000569252 RTEL1-TNFRSF6BF6WH68 1400 aa24.13■■□□□ 1.45
USB1-215ENST00000569252 TRIM26Q12899 539 aaPredicted RBP24.13■■□□□ 1.45
USB1-215ENST00000569252 ADGBQ8N7X0 1667 aa24.12■■□□□ 1.45
USB1-215ENST00000569252 DNMT1P26358 1616 aaKnown RBP24.12■■□□□ 1.45
USB1-215ENST00000569252 FBXO31Q5XUX0 539 aaPredicted RBP24.11■■□□□ 1.45
USB1-215ENST00000569252 ANKRD30AQ9BXX3 1397 aa24.11■■□□□ 1.45
USB1-215ENST00000569252 IQSEC2Q5JU85 1478 aa24.11■■□□□ 1.45
USB1-215ENST00000569252 RRP7BPQ9NSQ0 103 aa24.1■■□□□ 1.45
USB1-215ENST00000569252 PLA2R1Q13018 1463 aa24.08■■□□□ 1.45
USB1-215ENST00000569252 SHANK2Q9UPX8 1470 aa24.08■■□□□ 1.45
USB1-215ENST00000569252 PPP6R1Q9UPN7 881 aa24.05■■□□□ 1.44
USB1-215ENST00000569252 PKD2Q13563 968 aa24.04■■□□□ 1.44
USB1-215ENST00000569252 A2ML1A8K2U0 1454 aa24.04■■□□□ 1.44
USB1-215ENST00000569252 MAST1Q9Y2H9 1570 aa24.03■■□□□ 1.44
USB1-215ENST00000569252 NEURL4Q96JN8 1562 aa24.03■■□□□ 1.44
USB1-215ENST00000569252 KIF3BO15066 747 aa24.02■■□□□ 1.44
USB1-215ENST00000569252 SCAF1Q9H7N4 1312 aaKnown RBP24.02■■□□□ 1.44
USB1-215ENST00000569252 ROCK1Q13464 1354 aa24.02■■□□□ 1.44
USB1-215ENST00000569252 DHX29Q7Z478 1369 aaKnown RBP24.01■■□□□ 1.43
USB1-215ENST00000569252 CROCC2H7BZ55 1655 aa24■■□□□ 1.43
USB1-215ENST00000569252 KIF15Q9NS87 1388 aa24■■□□□ 1.43
USB1-215ENST00000569252 PIP4K2BP78356 416 aa23.99■■□□□ 1.43
USB1-215ENST00000569252 TNRQ92752 1358 aa23.99■■□□□ 1.43
USB1-215ENST00000569252 POLR1AO95602 1720 aaPredicted RBP23.98■■□□□ 1.43
USB1-215ENST00000569252 ADGRL2O95490 1459 aa23.96■■□□□ 1.43
USB1-215ENST00000569252 HSPA1LP34931 641 aa23.96■■□□□ 1.43
USB1-215ENST00000569252 KDM5DQ9BY66 1539 aa23.94■■□□□ 1.42
USB1-215ENST00000569252 SENP3Q9H4L4 574 aaPredicted RBP23.94■■□□□ 1.42
USB1-215ENST00000569252 DUOX2Q9NRD8 1548 aa23.93■■□□□ 1.42
USB1-215ENST00000569252 PZPP20742 1482 aa23.93■■□□□ 1.42
USB1-215ENST00000569252 WASHC2CQ9Y4E1 1318 aa23.9■■□□□ 1.42
USB1-215ENST00000569252 ANKRD50Q9ULJ7 1429 aa23.89■■□□□ 1.41
USB1-215ENST00000569252 VWDEQ8N2E2 1590 aa23.89■■□□□ 1.41
USB1-215ENST00000569252 ALKQ9UM73 1620 aa23.88■■□□□ 1.41
USB1-215ENST00000569252 MED1Q15648 1581 aaPredicted RBP23.87■■□□□ 1.41
USB1-215ENST00000569252 ERBINQ96RT1 1412 aa23.87■■□□□ 1.41
USB1-215ENST00000569252 ACIN1Q9UKV3 1341 aaKnown RBP23.86■■□□□ 1.41
USB1-215ENST00000569252 PCGF6Q9BYE7 350 aa23.86■■□□□ 1.41
USB1-215ENST00000569252 HFM1A2PYH4 1435 aa23.85■■□□□ 1.41
USB1-215ENST00000569252 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.85■■□□□ 1.41
USB1-215ENST00000569252 STRCP1A6NGW2 1772 aa23.85■■□□□ 1.41
USB1-215ENST00000569252 UGGT1Q9NYU2 1555 aa23.84■■□□□ 1.41
USB1-215ENST00000569252 NAIPQ13075 1403 aa23.84■■□□□ 1.41
USB1-215ENST00000569252 CPS1P31327 1500 aa23.83■■□□□ 1.41
USB1-215ENST00000569252 NPHP4O75161 1426 aaPredicted RBP23.83■■□□□ 1.4
USB1-215ENST00000569252 SETD5Q9C0A6 1442 aa23.83■■□□□ 1.4
USB1-215ENST00000569252 ANKLE2Q86XL3 938 aa23.82■■□□□ 1.4
USB1-215ENST00000569252 CFAP65Q6ZU64 1925 aaKnown RBP23.81■■□□□ 1.4
USB1-215ENST00000569252 TRIM52Q96A61 297 aa23.81■■□□□ 1.4
USB1-215ENST00000569252 KANK1Q14678 1352 aa23.8■■□□□ 1.4
USB1-215ENST00000569252 ABCC3O15438 1527 aa23.8■■□□□ 1.4
USB1-215ENST00000569252 IQGAP1P46940 1657 aa23.79■■□□□ 1.4
USB1-215ENST00000569252 CEP152O94986 1710 aa23.79■■□□□ 1.4
USB1-215ENST00000569252 MROH1Q8NDA8 1641 aa23.78■■□□□ 1.4
USB1-215ENST00000569252 RNF17Q9BXT8 1623 aaKnown RBP23.77■■□□□ 1.4
USB1-215ENST00000569252 NLRP1Q9C000 1473 aa23.77■■□□□ 1.4
USB1-215ENST00000569252 TOM1O60784 492 aa23.77■■□□□ 1.4
USB1-215ENST00000569252 FAM135AQ9P2D6 1515 aa23.77■■□□□ 1.4
USB1-215ENST00000569252 THEMISQ8N1K5 641 aaPredicted RBP23.76■■□□□ 1.39
USB1-215ENST00000569252 EIF2AK4Q9P2K8 1649 aaKnown RBP23.76■■□□□ 1.39
USB1-215ENST00000569252 DEPDC5O75140 1603 aa23.75■■□□□ 1.39
USB1-215ENST00000569252 HRCP23327 699 aa23.75■■□□□ 1.39
USB1-215ENST00000569252 ERVK-7P63135 1459 aa23.75■■□□□ 1.39
USB1-215ENST00000569252 MED14O60244 1454 aa23.74■■□□□ 1.39
USB1-215ENST00000569252 GCC2Q8IWJ2 1684 aa23.73■■□□□ 1.39
USB1-215ENST00000569252 NUP155O75694 1391 aa23.72■■□□□ 1.39
USB1-215ENST00000569252 RAB3GAP2Q9H2M9 1393 aa23.72■■□□□ 1.39
USB1-215ENST00000569252 LRRC7Q96NW7 1537 aa23.71■■□□□ 1.39
USB1-215ENST00000569252 ZC3H13Q5T200 1668 aaKnown RBP23.7■■□□□ 1.38
USB1-215ENST00000569252 UBR1Q8IWV7 1749 aa23.69■■□□□ 1.38
USB1-215ENST00000569252 LTKP29376 864 aa23.65■■□□□ 1.38
USB1-215ENST00000569252 PHF23Q9BUL5 403 aaPredicted RBP23.64■■□□□ 1.37
USB1-215ENST00000569252 SLC4A1APQ9BWU0 796 aaKnown RBP23.64■■□□□ 1.37
USB1-215ENST00000569252 XIRP1Q702N8 1843 aaKnown RBP23.61■■□□□ 1.37
USB1-215ENST00000569252 SCAF11Q99590 1463 aaKnown RBP23.61■■□□□ 1.37
USB1-215ENST00000569252 SYNMO15061 1565 aa23.6■■□□□ 1.37
USB1-215ENST00000569252 PRDM15P57071 1507 aaPredicted RBP23.59■■□□□ 1.37
USB1-215ENST00000569252 UNC13BO14795 1591 aa23.58■■□□□ 1.37
USB1-215ENST00000569252 MPHOSPH9Q99550 1183 aa23.58■■□□□ 1.37
USB1-215ENST00000569252 PIK3C2BO00750 1634 aa23.58■■□□□ 1.36
USB1-215ENST00000569252 TXNDC2Q86VQ3 553 aa23.57■■□□□ 1.36
USB1-215ENST00000569252 RBM33Q96EV2 1170 aaKnown RBP23.57■■□□□ 1.36
USB1-215ENST00000569252 ARHGAP23Q9P227 1491 aa23.56■■□□□ 1.36
USB1-215ENST00000569252 RGS17Q9UGC6 210 aaPredicted RBP23.53■■□□□ 1.36
USB1-215ENST00000569252 SLIT1O75093 1534 aa23.53■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 131.8 ms