RNA–Protein interactions for RNA: ENST00000560731.5

MARK3-222, Transcript of microtubule affinity regulating kinase 3, human

TSL 3

Gene MARK3, Length 432 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MARK3-222	ENST00000560731	AQR	O60306	1485 aa	Known RBP eCLIP	12.17	□□□□□ -0.46	4e-6	■■■■■ 31
MARK3-222	ENST00000560731	PPP1R37	O75864	691 aa		12.17	□□□□□ -0.46
MARK3-222	ENST00000560731	KIF3C	O14782	793 aa		12.16	□□□□□ -0.46
MARK3-222	ENST00000560731	TMC2	Q8TDI7	906 aa		12.15	□□□□□ -0.46
MARK3-222	ENST00000560731	CUL7	Q14999	1698 aa		12.15	□□□□□ -0.46
MARK3-222	ENST00000560731	C2orf72	A6NCS6	295 aa		12.14	□□□□□ -0.47
MARK3-222	ENST00000560731	ZNF608	Q9ULD9	1512 aa	Predicted RBP	12.14	□□□□□ -0.47
MARK3-222	ENST00000560731	GRIN2B	Q13224	1484 aa		12.14	□□□□□ -0.47
MARK3-222	ENST00000560731	CLIP1	P30622	1438 aa		12.13	□□□□□ -0.47
MARK3-222	ENST00000560731	FHAD1	B1AJZ9	1412 aa		12.11	□□□□□ -0.47
MARK3-222	ENST00000560731	FAM205C	A6NFA0	338 aa		12.11	□□□□□ -0.47
MARK3-222	ENST00000560731	GPR153	Q6NV75	609 aa		12.09	□□□□□ -0.47
MARK3-222	ENST00000560731	HS3ST6	Q96QI5	342 aa		12.09	□□□□□ -0.47
MARK3-222	ENST00000560731	ERBB3	P21860	1342 aa		12.07	□□□□□ -0.48
MARK3-222	ENST00000560731	PBRM1	Q86U86	1689 aa		12.06	□□□□□ -0.48
MARK3-222	ENST00000560731	SLC34A2	O95436	690 aa		12.05	□□□□□ -0.48
MARK3-222	ENST00000560731	RANGAP1	P46060	587 aa	Predicted RBP	12.04	□□□□□ -0.48
MARK3-222	ENST00000560731	EIF4G3	O43432	1585 aa	Known RBP	12.04	□□□□□ -0.48
MARK3-222	ENST00000560731	MAGI1	Q96QZ7	1491 aa	Predicted RBP	12.03	□□□□□ -0.48
MARK3-222	ENST00000560731	POTEB3	A0JP26	581 aa		12.03	□□□□□ -0.48
MARK3-222	ENST00000560731	POTEB	Q6S5H4	581 aa		12.03	□□□□□ -0.48
MARK3-222	ENST00000560731	GPHN	Q9NQX3	736 aa	Predicted RBP	12.03	□□□□□ -0.48
MARK3-222	ENST00000560731	ADAMTS12	P58397	1594 aa		12.03	□□□□□ -0.48
MARK3-222	ENST00000560731	VPS8	Q8N3P4	1428 aa		12.03	□□□□□ -0.48
MARK3-222	ENST00000560731	ARHGAP35	Q9NRY4	1499 aa		12.02	□□□□□ -0.48
MARK3-222	ENST00000560731	ARSI	Q5FYB1	569 aa		12.02	□□□□□ -0.49
MARK3-222	ENST00000560731	SNAPC4	Q5SXM2	1469 aa		12.02	□□□□□ -0.49
MARK3-222	ENST00000560731	FOXK1	P85037	733 aa		12.01	□□□□□ -0.49
MARK3-222	ENST00000560731	ARAP1	Q96P48	1450 aa		12.01	□□□□□ -0.49
MARK3-222	ENST00000560731	CHMP7	Q8WUX9	453 aa	Predicted RBP	11.99	□□□□□ -0.49
MARK3-222	ENST00000560731	SYNJ2	O15056	1496 aa		11.99	□□□□□ -0.49
MARK3-222	ENST00000560731	TRIM26	Q12899	539 aa	Predicted RBP	11.98	□□□□□ -0.49
MARK3-222	ENST00000560731	VARS2	Q5ST30	1063 aa	Known RBP	11.98	□□□□□ -0.49
MARK3-222	ENST00000560731	GRIN2A	Q12879	1464 aa		11.97	□□□□□ -0.49
MARK3-222	ENST00000560731	PLPP6	Q8IY26	295 aa		11.96	□□□□□ -0.49
MARK3-222	ENST00000560731	PCDHGA4	Q9Y5G9	962 aa		11.96	□□□□□ -0.49
MARK3-222	ENST00000560731	CTTNBP2	Q8WZ74	1663 aa		11.96	□□□□□ -0.5
MARK3-222	ENST00000560731	KIAA0586	Q9BVV6	1533 aa		11.96	□□□□□ -0.5
MARK3-222	ENST00000560731	ZNF316	A6NFI3	1004 aa	Predicted RBP	11.94	□□□□□ -0.5
MARK3-222	ENST00000560731	KRTAP3-3	Q9BYR6	98 aa		11.94	□□□□□ -0.5
MARK3-222	ENST00000560731	KRTAP3-2	Q9BYR7	98 aa		11.94	□□□□□ -0.5
MARK3-222	ENST00000560731	EFCAB5	A4FU69	1503 aa		11.94	□□□□□ -0.5
MARK3-222	ENST00000560731	DSG2	Q14126	1118 aa		11.93	□□□□□ -0.5
MARK3-222	ENST00000560731	NBR1	Q14596	966 aa		11.93	□□□□□ -0.5
MARK3-222	ENST00000560731	CADPS2	Q86UW7	1296 aa		11.93	□□□□□ -0.5
MARK3-222	ENST00000560731	ZNF687	Q8N1G0	1237 aa		11.93	□□□□□ -0.5
MARK3-222	ENST00000560731	PTCD2	Q8WV60	388 aa	Known RBP	11.93	□□□□□ -0.5
MARK3-222	ENST00000560731	PDE4A	P27815	886 aa		11.92	□□□□□ -0.5
MARK3-222	ENST00000560731	PPARGC1B	Q86YN6	1023 aa	Known RBP	11.92	□□□□□ -0.5
MARK3-222	ENST00000560731	P3H3	Q8IVL6	736 aa		11.92	□□□□□ -0.5
MARK3-222	ENST00000560731	SPNS2	Q8IVW8	549 aa		11.92	□□□□□ -0.5
MARK3-222	ENST00000560731	KHSRP	Q92945	711 aa	Known RBP eCLIP	11.92	□□□□□ -0.5	2e-6	■□□□□ 9.5
MARK3-222	ENST00000560731	PCGF6	Q9BYE7	350 aa		11.92	□□□□□ -0.5
MARK3-222	ENST00000560731	CRISPLD2	Q9H0B8	497 aa		11.92	□□□□□ -0.5
MARK3-222	ENST00000560731	NUP160	Q12769	1436 aa		11.92	□□□□□ -0.5
MARK3-222	ENST00000560731	IQGAP2	Q13576	1575 aa		11.91	□□□□□ -0.5
MARK3-222	ENST00000560731	TBC1D12	O60347	775 aa		11.9	□□□□□ -0.5
MARK3-222	ENST00000560731	NUDT7	P0C024	238 aa		11.9	□□□□□ -0.5
MARK3-222	ENST00000560731	UGGT2	Q9NYU1	1516 aa		11.9	□□□□□ -0.5
MARK3-222	ENST00000560731	SAMD9	Q5K651	1589 aa		11.89	□□□□□ -0.51
MARK3-222	ENST00000560731	FHOD3	Q2V2M9	1422 aa		11.89	□□□□□ -0.51
MARK3-222	ENST00000560731	PRKCSH	P14314	528 aa	Predicted RBP	11.88	□□□□□ -0.51
MARK3-222	ENST00000560731	JPH4	Q96JJ6	628 aa		11.87	□□□□□ -0.51
MARK3-222	ENST00000560731	CEP170	Q5SW79	1584 aa		11.87	□□□□□ -0.51
MARK3-222	ENST00000560731	FMN1	Q68DA7	1419 aa		11.86	□□□□□ -0.51
MARK3-222	ENST00000560731	MAP3K1	Q13233	1512 aa		11.86	□□□□□ -0.51
MARK3-222	ENST00000560731	PSD	A5PKW4	1024 aa	Predicted RBP	11.86	□□□□□ -0.51
MARK3-222	ENST00000560731	CASKIN1	Q8WXD9	1431 aa		11.86	□□□□□ -0.51
MARK3-222	ENST00000560731	MMRN1	Q13201	1228 aa		11.85	□□□□□ -0.51
MARK3-222	ENST00000560731	PPP1R15B	Q5SWA1	713 aa		11.85	□□□□□ -0.51
MARK3-222	ENST00000560731	LHX6	Q9UPM6	363 aa		11.85	□□□□□ -0.51
MARK3-222	ENST00000560731	KANK4	Q5T7N3	995 aa	Predicted RBP	11.84	□□□□□ -0.51
MARK3-222	ENST00000560731	DISP1	Q96F81	1524 aa		11.84	□□□□□ -0.51
MARK3-222	ENST00000560731	NCKAP5L	Q9HCH0	1330 aa		11.84	□□□□□ -0.51
MARK3-222	ENST00000560731	TPRN	Q4KMQ1	711 aa		11.83	□□□□□ -0.52
MARK3-222	ENST00000560731	WDR70	Q9NW82	654 aa		11.83	□□□□□ -0.52
MARK3-222	ENST00000560731	KDM4F	A0A1W2PPD8	638 aa		11.82	□□□□□ -0.52
MARK3-222	ENST00000560731	FYCO1	Q9BQS8	1478 aa		11.82	□□□□□ -0.52
MARK3-222	ENST00000560731	PBX2	P40425	430 aa		11.81	□□□□□ -0.52
MARK3-222	ENST00000560731	OXER1	Q8TDS5	423 aa		11.8	□□□□□ -0.52
MARK3-222	ENST00000560731	LARP6	Q9BRS8	491 aa	Known RBP	11.8	□□□□□ -0.52
MARK3-222	ENST00000560731	CARMIL2	Q6F5E8	1435 aa		11.79	□□□□□ -0.52
MARK3-222	ENST00000560731	DDX27	Q96GQ7	796 aa	Known RBP	11.79	□□□□□ -0.52
MARK3-222	ENST00000560731	MFSD10	Q14728	455 aa		11.78	□□□□□ -0.52
MARK3-222	ENST00000560731	ATP1B4	Q9UN42	357 aa	Predicted RBP	11.78	□□□□□ -0.52
MARK3-222	ENST00000560731	PCF11	O94913	1555 aa	Known RBP	11.78	□□□□□ -0.52
MARK3-222	ENST00000560731	TTBK1	Q5TCY1	1321 aa	Predicted RBP	11.78	□□□□□ -0.52
MARK3-222	ENST00000560731	CHD1	O14646	1710 aa		11.77	□□□□□ -0.52
MARK3-222	ENST00000560731	TIAM1	Q13009	1591 aa		11.77	□□□□□ -0.53
MARK3-222	ENST00000560731	KCNV2	Q8TDN2	545 aa		11.77	□□□□□ -0.53
MARK3-222	ENST00000560731	KIAA0556	O60303	1618 aa		11.77	□□□□□ -0.53
MARK3-222	ENST00000560731	LRRC9	Q6ZRR7	1453 aa		11.76	□□□□□ -0.53
MARK3-222	ENST00000560731	PTGER2	P43116	358 aa		11.74	□□□□□ -0.53
MARK3-222	ENST00000560731	UPF1	Q92900	1129 aa	Known RBP eCLIP	11.74	□□□□□ -0.53
MARK3-222	ENST00000560731	PRG4	Q92954	1404 aa	Predicted RBP	11.74	□□□□□ -0.53
MARK3-222	ENST00000560731	LSM11	P83369	360 aa	Known RBP eCLIP	11.73	□□□□□ -0.53
MARK3-222	ENST00000560731	PPP4R3B	Q5MIZ7	849 aa		11.72	□□□□□ -0.53
MARK3-222	ENST00000560731	SHROOM2	Q13796	1616 aa		11.71	□□□□□ -0.53
MARK3-222	ENST00000560731	CLASP1	Q7Z460	1538 aa		11.71	□□□□□ -0.53
MARK3-222	ENST00000560731	CFAP43	Q8NDM7	1665 aa		11.71	□□□□□ -0.54

Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms