RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 ANKLE2Q86XL3 938 aa20.3■□□□□ 0.84
SHMT2-230ENST00000557427 TNRQ92752 1358 aa20.3■□□□□ 0.84
SHMT2-230ENST00000557427 STRCP1A6NGW2 1772 aa20.29■□□□□ 0.84
SHMT2-230ENST00000557427 CCDC18Q5T9S5 1454 aa20.29■□□□□ 0.84
SHMT2-230ENST00000557427 CASKIN1Q8WXD9 1431 aa20.28■□□□□ 0.84
SHMT2-230ENST00000557427 LRRC7Q96NW7 1537 aa20.28■□□□□ 0.84
SHMT2-230ENST00000557427 MED14O60244 1454 aa20.28■□□□□ 0.84
SHMT2-230ENST00000557427 NPHP4O75161 1426 aaPredicted RBP20.27■□□□□ 0.84
SHMT2-230ENST00000557427 POTEAQ6S8J7 498 aa20.26■□□□□ 0.83
SHMT2-230ENST00000557427 ADGBQ8N7X0 1667 aa20.24■□□□□ 0.83
SHMT2-230ENST00000557427 DEPDC5O75140 1603 aa20.24■□□□□ 0.83
SHMT2-230ENST00000557427 THEMISQ8N1K5 641 aaPredicted RBP20.23■□□□□ 0.83
SHMT2-230ENST00000557427 CFDP1Q9UEE9 299 aaPredicted RBP20.23■□□□□ 0.83
SHMT2-230ENST00000557427 PZPP20742 1482 aa20.23■□□□□ 0.83
SHMT2-230ENST00000557427 PLEKHH2Q8IVE3 1493 aa20.22■□□□□ 0.83
SHMT2-230ENST00000557427 RNF17Q9BXT8 1623 aaKnown RBP20.21■□□□□ 0.83
SHMT2-230ENST00000557427 MIA2Q96PC5 1412 aa20.2■□□□□ 0.82
SHMT2-230ENST00000557427 ZNF644Q9H582 1327 aaPredicted RBP20.2■□□□□ 0.82
SHMT2-230ENST00000557427 UGGT1Q9NYU2 1555 aa20.2■□□□□ 0.82
SHMT2-230ENST00000557427 DHX29Q7Z478 1369 aaKnown RBP20.2■□□□□ 0.82
SHMT2-230ENST00000557427 IQGAP1P46940 1657 aa20.19■□□□□ 0.82
SHMT2-230ENST00000557427 MBD5Q9P267 1494 aa20.18■□□□□ 0.82
SHMT2-230ENST00000557427 KIF3BO15066 747 aa20.17■□□□□ 0.82
SHMT2-230ENST00000557427 NLRP1Q9C000 1473 aa20.17■□□□□ 0.82
SHMT2-230ENST00000557427 KDM5DQ9BY66 1539 aa20.16■□□□□ 0.82
SHMT2-230ENST00000557427 FAM135AQ9P2D6 1515 aa20.16■□□□□ 0.82
SHMT2-230ENST00000557427 SYNMO15061 1565 aa20.16■□□□□ 0.82
SHMT2-230ENST00000557427 CCNB3Q8WWL7 1395 aa20.14■□□□□ 0.81
SHMT2-230ENST00000557427 RTEL1-TNFRSF6BF6WH68 1400 aa20.13■□□□□ 0.81
SHMT2-230ENST00000557427 WASHC2CQ9Y4E1 1318 aa20.13■□□□□ 0.81
SHMT2-230ENST00000557427 FYCO1Q9BQS8 1478 aa20.12■□□□□ 0.81
SHMT2-230ENST00000557427 ZC3H13Q5T200 1668 aaKnown RBP20.1■□□□□ 0.81
SHMT2-230ENST00000557427 XIRP1Q702N8 1843 aaKnown RBP20.1■□□□□ 0.81
SHMT2-230ENST00000557427 SETD1AO15047 1707 aaKnown RBP20.1■□□□□ 0.81
SHMT2-230ENST00000557427 FAM135BQ49AJ0 1406 aa20.07■□□□□ 0.8
SHMT2-230ENST00000557427 TIAM1Q13009 1591 aa20.04■□□□□ 0.8
SHMT2-230ENST00000557427 LTKP29376 864 aa20.03■□□□□ 0.8
SHMT2-230ENST00000557427 NCOA2Q15596 1464 aa19.99■□□□□ 0.79
SHMT2-230ENST00000557427 SCAF11Q99590 1463 aaKnown RBP19.99■□□□□ 0.79
SHMT2-230ENST00000557427 MTUS2Q5JR59 1369 aa19.99■□□□□ 0.79
SHMT2-230ENST00000557427 UBR1Q8IWV7 1749 aa19.98■□□□□ 0.79
SHMT2-230ENST00000557427 ERVK-7P63135 1459 aa19.98■□□□□ 0.79
SHMT2-230ENST00000557427 UPF1Q92900 1129 aaKnown RBP eCLIP19.97■□□□□ 0.79
SHMT2-230ENST00000557427 CCDC141Q6ZP82 1450 aa19.97■□□□□ 0.79
SHMT2-230ENST00000557427 ROBO1Q9Y6N7 1651 aa19.97■□□□□ 0.79
SHMT2-230ENST00000557427 ABCC3O15438 1527 aa19.97■□□□□ 0.79
SHMT2-230ENST00000557427 TXNDC2Q86VQ3 553 aa19.96■□□□□ 0.79
SHMT2-230ENST00000557427 ARHGAP23Q9P227 1491 aa19.96■□□□□ 0.79
SHMT2-230ENST00000557427 TMEM94Q12767 1356 aa19.95■□□□□ 0.78
SHMT2-230ENST00000557427 SLIT1O75093 1534 aa19.93■□□□□ 0.78
SHMT2-230ENST00000557427 RBM33Q96EV2 1170 aaKnown RBP19.93■□□□□ 0.78
SHMT2-230ENST00000557427 CAMSAP2Q08AD1 1489 aa19.91■□□□□ 0.78
SHMT2-230ENST00000557427 MAP3K1Q13233 1512 aa19.91■□□□□ 0.78
SHMT2-230ENST00000557427 CFAP65Q6ZU64 1925 aaKnown RBP19.9■□□□□ 0.78
SHMT2-230ENST00000557427 CEP162Q5TB80 1403 aa19.89■□□□□ 0.77
SHMT2-230ENST00000557427 RSPH4AQ5TD94 716 aa19.89■□□□□ 0.77
SHMT2-230ENST00000557427 MROH1Q8NDA8 1641 aa19.87■□□□□ 0.77
SHMT2-230ENST00000557427 EHBP1L1Q8N3D4 1523 aa19.86■□□□□ 0.77
SHMT2-230ENST00000557427 KCNA6P17658 529 aa19.86■□□□□ 0.77
SHMT2-230ENST00000557427 JCADQ9P266 1359 aa19.85■□□□□ 0.77
SHMT2-230ENST00000557427 LRP6O75581 1613 aa19.84■□□□□ 0.77
SHMT2-230ENST00000557427 LOC105371045A0A1W2PR82 267 aa19.84■□□□□ 0.77
SHMT2-230ENST00000557427 PROSER2Q86WR7 435 aaPredicted RBP19.84■□□□□ 0.77
SHMT2-230ENST00000557427 TRIM52Q96A61 297 aa19.84■□□□□ 0.77
SHMT2-230ENST00000557427 EID1Q9Y6B2 187 aa19.84■□□□□ 0.77
SHMT2-230ENST00000557427 SRCAPQ6ZRS2 3230 aa19.83■□□□□ 0.77
SHMT2-230ENST00000557427 PHLPP1O60346 1717 aa19.83■□□□□ 0.77
SHMT2-230ENST00000557427 CEP152O94986 1710 aa19.83■□□□□ 0.77
SHMT2-230ENST00000557427 ARHGEF5Q12774 1597 aa19.83■□□□□ 0.76
SHMT2-230ENST00000557427 TMEM2Q9UHN6 1383 aa19.83■□□□□ 0.76
SHMT2-230ENST00000557427 LRRC9Q6ZRR7 1453 aa19.82■□□□□ 0.76
SHMT2-230ENST00000557427 TSPY4P0CV99 314 aa19.82■□□□□ 0.76
SHMT2-230ENST00000557427 TSPY10P0CW01 314 aa19.82■□□□□ 0.76
SHMT2-230ENST00000557427 SLC26A8Q96RN1 970 aa19.81■□□□□ 0.76
SHMT2-230ENST00000557427 SLAIN2Q9P270 581 aa19.81■□□□□ 0.76
SHMT2-230ENST00000557427 PRDM15P57071 1507 aaPredicted RBP19.81■□□□□ 0.76
SHMT2-230ENST00000557427 TET3O43151 1660 aa19.81■□□□□ 0.76
SHMT2-230ENST00000557427 PIK3C2BO00750 1634 aa19.79■□□□□ 0.76
SHMT2-230ENST00000557427 COL16A1Q07092 1604 aaPredicted RBP19.78■□□□□ 0.76
SHMT2-230ENST00000557427 EIF2AK4Q9P2K8 1649 aaKnown RBP19.78■□□□□ 0.76
SHMT2-230ENST00000557427 ZNF772Q68DY9 489 aaPredicted RBP19.77■□□□□ 0.76
SHMT2-230ENST00000557427 ARHGAP31Q2M1Z3 1444 aa19.76■□□□□ 0.75
SHMT2-230ENST00000557427 MAST1Q9Y2H9 1570 aa19.75■□□□□ 0.75
SHMT2-230ENST00000557427 SPATA31A6Q5VVP1 1343 aa19.75■□□□□ 0.75
SHMT2-230ENST00000557427 NWD1Q149M9 1564 aa19.74■□□□□ 0.75
SHMT2-230ENST00000557427 MSH6P52701 1360 aa19.74■□□□□ 0.75
SHMT2-230ENST00000557427 NKTRP30414 1462 aaKnown RBP19.73■□□□□ 0.75
SHMT2-230ENST00000557427 RXRBP28702 533 aa19.73■□□□□ 0.75
SHMT2-230ENST00000557427 IDI1Q13907 227 aa19.72■□□□□ 0.75
SHMT2-230ENST00000557427 MEX3CQ5U5Q3 659 aaKnown RBP19.72■□□□□ 0.75
SHMT2-230ENST00000557427 EFCAB6Q5THR3 1501 aa19.71■□□□□ 0.75
SHMT2-230ENST00000557427 FGD6Q6ZV73 1430 aa19.7■□□□□ 0.74
SHMT2-230ENST00000557427 STAG3Q9UJ98 1225 aa19.7■□□□□ 0.74
SHMT2-230ENST00000557427 CDK12Q9NYV4 1490 aaPredicted RBP19.68■□□□□ 0.74
SHMT2-230ENST00000557427 KDM5AP29375 1690 aaKnown RBP19.67■□□□□ 0.74
SHMT2-230ENST00000557427 DUOX2Q9NRD8 1548 aa19.66■□□□□ 0.74
SHMT2-230ENST00000557427 SHPRHQ149N8 1683 aa19.65■□□□□ 0.74
SHMT2-230ENST00000557427 AHDC1Q5TGY3 1603 aaPredicted RBP19.63■□□□□ 0.73
SHMT2-230ENST00000557427 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.62■□□□□ 0.73
SHMT2-230ENST00000557427 CHD2O14647 1828 aaKnown RBP19.62■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms