RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 KDM5DQ9BY66 1539 aa21.19■□□□□ 0.98
SHMT2-219ENST00000555563 FAM135AQ9P2D6 1515 aa21.19■□□□□ 0.98
SHMT2-219ENST00000555563 ZMYM3Q14202 1370 aa21.17■□□□□ 0.98
SHMT2-219ENST00000555563 MROH1Q8NDA8 1641 aa21.17■□□□□ 0.98
SHMT2-219ENST00000555563 ADGRL2O95490 1459 aa21.16■□□□□ 0.98
SHMT2-219ENST00000555563 ERBINQ96RT1 1412 aa21.16■□□□□ 0.98
SHMT2-219ENST00000555563 PPP6R1Q9UPN7 881 aa21.16■□□□□ 0.98
SHMT2-219ENST00000555563 ANKRD30AQ9BXX3 1397 aa21.15■□□□□ 0.98
SHMT2-219ENST00000555563 NPATQ14207 1427 aa21.14■□□□□ 0.98
SHMT2-219ENST00000555563 RRP7BPQ9NSQ0 103 aa21.14■□□□□ 0.97
SHMT2-219ENST00000555563 CHIC2Q9UKJ5 165 aa21.14■□□□□ 0.97
SHMT2-219ENST00000555563 NCOA1Q15788 1441 aa21.13■□□□□ 0.97
SHMT2-219ENST00000555563 UHRF1BP1Q6BDS2 1440 aa21.13■□□□□ 0.97
SHMT2-219ENST00000555563 ZC3H13Q5T200 1668 aaKnown RBP21.13■□□□□ 0.97
SHMT2-219ENST00000555563 ABCC3O15438 1527 aa21.11■□□□□ 0.97
SHMT2-219ENST00000555563 PRDM15P57071 1507 aaPredicted RBP21.11■□□□□ 0.97
SHMT2-219ENST00000555563 HSPA2P54652 639 aa21.11■□□□□ 0.97
SHMT2-219ENST00000555563 PTPRKQ15262 1439 aa21.11■□□□□ 0.97
SHMT2-219ENST00000555563 SETD1BQ9UPS6 1966 aaKnown RBP21.1■□□□□ 0.97
SHMT2-219ENST00000555563 DEPDC5O75140 1603 aa21.1■□□□□ 0.97
SHMT2-219ENST00000555563 MYO3AQ8NEV4 1616 aa21.1■□□□□ 0.97
SHMT2-219ENST00000555563 CEP152O94986 1710 aa21.09■□□□□ 0.97
SHMT2-219ENST00000555563 WASHC2CQ9Y4E1 1318 aa21.08■□□□□ 0.97
SHMT2-219ENST00000555563 PZPP20742 1482 aa21.08■□□□□ 0.97
SHMT2-219ENST00000555563 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.08■□□□□ 0.96
SHMT2-219ENST00000555563 RRBP1Q9P2E9 1410 aaKnown RBP21.06■□□□□ 0.96
SHMT2-219ENST00000555563 ZNF142P52746 1687 aaPredicted RBP21.05■□□□□ 0.96
SHMT2-219ENST00000555563 CAMSAP1Q5T5Y3 1602 aa21.05■□□□□ 0.96
SHMT2-219ENST00000555563 ROCK1Q13464 1354 aa21.02■□□□□ 0.96
SHMT2-219ENST00000555563 CEP170BQ9Y4F5 1589 aaPredicted RBP21.02■□□□□ 0.95
SHMT2-219ENST00000555563 ANKRD50Q9ULJ7 1429 aa21.01■□□□□ 0.95
SHMT2-219ENST00000555563 ITGAEP38570 1179 aa21■□□□□ 0.95
SHMT2-219ENST00000555563 VWDEQ8N2E2 1590 aa21■□□□□ 0.95
SHMT2-219ENST00000555563 TNRQ92752 1358 aa20.98■□□□□ 0.95
SHMT2-219ENST00000555563 SPATA31D1Q6ZQQ2 1576 aa20.98■□□□□ 0.95
SHMT2-219ENST00000555563 FBXO31Q5XUX0 539 aaPredicted RBP20.98■□□□□ 0.95
SHMT2-219ENST00000555563 STRCQ7RTU9 1775 aa20.97■□□□□ 0.95
SHMT2-219ENST00000555563 CERKQ8TCT0 537 aa20.97■□□□□ 0.95
SHMT2-219ENST00000555563 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.97■□□□□ 0.95
SHMT2-219ENST00000555563 ERVK-7P63135 1459 aa20.96■□□□□ 0.95
SHMT2-219ENST00000555563 LMTK2Q8IWU2 1503 aa20.96■□□□□ 0.95
SHMT2-219ENST00000555563 UNC13BO14795 1591 aa20.96■□□□□ 0.95
SHMT2-219ENST00000555563 KANK1Q14678 1352 aa20.96■□□□□ 0.95
SHMT2-219ENST00000555563 A2ML1A8K2U0 1454 aa20.95■□□□□ 0.94
SHMT2-219ENST00000555563 ARHGAP31Q2M1Z3 1444 aa20.94■□□□□ 0.94
SHMT2-219ENST00000555563 EFCAB6Q5THR3 1501 aa20.93■□□□□ 0.94
SHMT2-219ENST00000555563 NLRP1Q9C000 1473 aa20.91■□□□□ 0.94
SHMT2-219ENST00000555563 PLA2R1Q13018 1463 aa20.89■□□□□ 0.94
SHMT2-219ENST00000555563 DMRT2Q9Y5R5 561 aa20.88■□□□□ 0.93
SHMT2-219ENST00000555563 GCC2Q8IWJ2 1684 aa20.88■□□□□ 0.93
SHMT2-219ENST00000555563 CFAP65Q6ZU64 1925 aaKnown RBP20.88■□□□□ 0.93
SHMT2-219ENST00000555563 TET3O43151 1660 aa20.87■□□□□ 0.93
SHMT2-219ENST00000555563 IQGAP3Q86VI3 1631 aa20.86■□□□□ 0.93
SHMT2-219ENST00000555563 UGGT1Q9NYU2 1555 aa20.85■□□□□ 0.93
SHMT2-219ENST00000555563 PTPRTO14522 1441 aa20.83■□□□□ 0.93
SHMT2-219ENST00000555563 NAIPQ13075 1403 aa20.83■□□□□ 0.93
SHMT2-219ENST00000555563 SYNMO15061 1565 aa20.83■□□□□ 0.92
SHMT2-219ENST00000555563 POLR1AO95602 1720 aaPredicted RBP20.82■□□□□ 0.92
SHMT2-219ENST00000555563 RPRD2Q5VT52 1461 aaKnown RBP20.81■□□□□ 0.92
SHMT2-219ENST00000555563 UBR1Q8IWV7 1749 aa20.81■□□□□ 0.92
SHMT2-219ENST00000555563 HFM1A2PYH4 1435 aa20.8■□□□□ 0.92
SHMT2-219ENST00000555563 NCKAP5LQ9HCH0 1330 aa20.79■□□□□ 0.92
SHMT2-219ENST00000555563 NOS1P29475 1434 aa20.79■□□□□ 0.92
SHMT2-219ENST00000555563 NEURL4Q96JN8 1562 aa20.79■□□□□ 0.92
SHMT2-219ENST00000555563 E9PCH4 1651 aa20.79■□□□□ 0.92
SHMT2-219ENST00000555563 PIK3C2BO00750 1634 aa20.78■□□□□ 0.92
SHMT2-219ENST00000555563 NUP155O75694 1391 aa20.77■□□□□ 0.92
SHMT2-219ENST00000555563 PKD2Q13563 968 aa20.77■□□□□ 0.92
SHMT2-219ENST00000555563 THEMISQ8N1K5 641 aaPredicted RBP20.75■□□□□ 0.91
SHMT2-219ENST00000555563 KDM5AP29375 1690 aaKnown RBP20.73■□□□□ 0.91
SHMT2-219ENST00000555563 ADGRB3O60242 1522 aa20.72■□□□□ 0.91
SHMT2-219ENST00000555563 SLIT1O75093 1534 aa20.7■□□□□ 0.9
SHMT2-219ENST00000555563 ARHGAP23Q9P227 1491 aa20.69■□□□□ 0.9
SHMT2-219ENST00000555563 IDI1Q13907 227 aa20.69■□□□□ 0.9
SHMT2-219ENST00000555563 MED14O60244 1454 aa20.69■□□□□ 0.9
SHMT2-219ENST00000555563 ANKLE2Q86XL3 938 aa20.68■□□□□ 0.9
SHMT2-219ENST00000555563 LTBP4Q8N2S1 1624 aa20.67■□□□□ 0.9
SHMT2-219ENST00000555563 IQGAP1P46940 1657 aa20.67■□□□□ 0.9
SHMT2-219ENST00000555563 NPHP4O75161 1426 aaPredicted RBP20.67■□□□□ 0.9
SHMT2-219ENST00000555563 SCAF11Q99590 1463 aaKnown RBP20.67■□□□□ 0.9
SHMT2-219ENST00000555563 SPHKAPQ2M3C7 1700 aa20.66■□□□□ 0.9
SHMT2-219ENST00000555563 SLC52A1Q9NWF4 448 aa20.65■□□□□ 0.9
SHMT2-219ENST00000555563 DISP3Q9P2K9 1392 aa20.64■□□□□ 0.89
SHMT2-219ENST00000555563 TMEM2Q9UHN6 1383 aa20.64■□□□□ 0.89
SHMT2-219ENST00000555563 STAG3Q9UJ98 1225 aa20.64■□□□□ 0.89
SHMT2-219ENST00000555563 MYO5BQ9ULV0 1848 aa20.64■□□□□ 0.89
SHMT2-219ENST00000555563 TMEM131LA2VDJ0 1609 aa20.64■□□□□ 0.89
SHMT2-219ENST00000555563 ZNF335Q9H4Z2 1342 aaPredicted RBP20.63■□□□□ 0.89
SHMT2-219ENST00000555563 TRIM52Q96A61 297 aa20.6■□□□□ 0.89
SHMT2-219ENST00000555563 LTKP29376 864 aa20.59■□□□□ 0.89
SHMT2-219ENST00000555563 ILDR2Q71H61 639 aa20.59■□□□□ 0.89
SHMT2-219ENST00000555563 TRPM2O94759 1503 aa20.58■□□□□ 0.89
SHMT2-219ENST00000555563 TXNDC2Q86VQ3 553 aa20.58■□□□□ 0.89
SHMT2-219ENST00000555563 CLTCL1P53675 1640 aa20.56■□□□□ 0.88
SHMT2-219ENST00000555563 ZFYVE9O95405 1425 aa20.56■□□□□ 0.88
SHMT2-219ENST00000555563 EID1Q9Y6B2 187 aa20.56■□□□□ 0.88
SHMT2-219ENST00000555563 SETD5Q9C0A6 1442 aa20.55■□□□□ 0.88
SHMT2-219ENST00000555563 SOCS7O14512 581 aa20.53■□□□□ 0.88
SHMT2-219ENST00000555563 SLC4A1APQ9BWU0 796 aaKnown RBP20.53■□□□□ 0.88
SHMT2-219ENST00000555563 IQSEC2Q5JU85 1478 aa20.53■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms