RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 NISCHQ9Y2I1 1504 aa33.63■■■□□ 2.97
SHMT2-219ENST00000555563 CCDC180Q9P1Z9 1646 aa29.98■■■□□ 2.39
SHMT2-219ENST00000555563 ABCC9O60706 1549 aa29.38■■■□□ 2.29
SHMT2-219ENST00000555563 RB1CC1Q8TDY2 1594 aa28.23■■■□□ 2.11
SHMT2-219ENST00000555563 NACADO15069 1562 aa28.16■■■□□ 2.1
SHMT2-219ENST00000555563 ZCCHC6Q5VYS8 1495 aaKnown RBP28.02■■■□□ 2.08
SHMT2-219ENST00000555563 DCAF8L2P0C7V8 631 aa28.02■■■□□ 2.08
SHMT2-219ENST00000555563 MYO15BQ96JP2 1530 aa27.97■■■□□ 2.07
SHMT2-219ENST00000555563 DCAF1Q9Y4B6 1507 aa27.82■■■□□ 2.04
SHMT2-219ENST00000555563 UNC13AQ9UPW8 1703 aa27.63■■■□□ 2.01
SHMT2-219ENST00000555563 DNAJC5BQ9UF47 199 aa27.54■■■□□ 2
SHMT2-219ENST00000555563 BICRAQ9NZM4 1560 aa27.4■■□□□ 1.98
SHMT2-219ENST00000555563 PABPN1Q86U42 306 aaKnown RBP eCLIP27.39■■□□□ 1.98
SHMT2-219ENST00000555563 SCRIBQ14160 1630 aa27.35■■□□□ 1.97
SHMT2-219ENST00000555563 SHROOM4Q9ULL8 1493 aa27.08■■□□□ 1.93
SHMT2-219ENST00000555563 EIF4G1Q04637 1599 aaKnown RBP26.67■■□□□ 1.86
SHMT2-219ENST00000555563 CC2D2AQ9P2K1 1620 aa26.59■■□□□ 1.85
SHMT2-219ENST00000555563 CECR2Q9BXF3 1484 aa26.4■■□□□ 1.82
SHMT2-219ENST00000555563 SMARCA4P51532 1647 aa26.14■■□□□ 1.78
SHMT2-219ENST00000555563 BAZ1AQ9NRL2 1556 aaPredicted RBP26.08■■□□□ 1.77
SHMT2-219ENST00000555563 ATAD2BQ9ULI0 1458 aa25.98■■□□□ 1.75
SHMT2-219ENST00000555563 SMARCA2P51531 1590 aa25.96■■□□□ 1.75
SHMT2-219ENST00000555563 NCAPD3P42695 1498 aa25.96■■□□□ 1.75
SHMT2-219ENST00000555563 MROH2BQ7Z745 1585 aa25.93■■□□□ 1.74
SHMT2-219ENST00000555563 HMGXB3Q12766 1538 aa25.88■■□□□ 1.73
SHMT2-219ENST00000555563 PEG3Q9GZU2 1588 aa25.88■■□□□ 1.73
SHMT2-219ENST00000555563 BAZ1BQ9UIG0 1483 aaKnown RBP25.78■■□□□ 1.72
SHMT2-219ENST00000555563 WIZO95785 1651 aa25.66■■□□□ 1.7
SHMT2-219ENST00000555563 RSF1Q96T23 1441 aaPredicted RBP25.57■■□□□ 1.68
SHMT2-219ENST00000555563 DNAJC5Q9H3Z4 198 aa25.5■■□□□ 1.67
SHMT2-219ENST00000555563 NESP48681 1621 aa25.41■■□□□ 1.66
SHMT2-219ENST00000555563 TOP2AP11388 1531 aaKnown RBP25.38■■□□□ 1.65
SHMT2-219ENST00000555563 LAMC3Q9Y6N6 1575 aa25.32■■□□□ 1.64
SHMT2-219ENST00000555563 ERCC6Q03468 1493 aa25.32■■□□□ 1.64
SHMT2-219ENST00000555563 CADPSQ9ULU8 1353 aa25.19■■□□□ 1.62
SHMT2-219ENST00000555563 KIF21AQ7Z4S6 1674 aa25.13■■□□□ 1.61
SHMT2-219ENST00000555563 PDS5BQ9NTI5 1447 aa25.12■■□□□ 1.61
SHMT2-219ENST00000555563 CUX2O14529 1486 aa25.1■■□□□ 1.61
SHMT2-219ENST00000555563 THOC2Q8NI27 1593 aaKnown RBP25.09■■□□□ 1.61
SHMT2-219ENST00000555563 CFTRP13569 1480 aa25.05■■□□□ 1.6
SHMT2-219ENST00000555563 CCDC88BA6NC98 1476 aa25.04■■□□□ 1.6
SHMT2-219ENST00000555563 FANCD2Q9BXW9 1451 aa24.94■■□□□ 1.58
SHMT2-219ENST00000555563 PRDM2Q13029 1718 aa24.92■■□□□ 1.58
SHMT2-219ENST00000555563 CEP164Q9UPV0 1460 aa24.92■■□□□ 1.58
SHMT2-219ENST00000555563 MRC2Q9UBG0 1479 aa24.91■■□□□ 1.58
SHMT2-219ENST00000555563 WDR62O43379 1518 aa24.86■■□□□ 1.57
SHMT2-219ENST00000555563 SUPT5HO00267 1087 aaKnown RBP24.81■■□□□ 1.56
SHMT2-219ENST00000555563 URB2Q14146 1524 aaKnown RBP24.71■■□□□ 1.55
SHMT2-219ENST00000555563 TOPBP1Q92547 1522 aa24.55■■□□□ 1.52
SHMT2-219ENST00000555563 DNMBPQ6XZF7 1577 aa24.52■■□□□ 1.52
SHMT2-219ENST00000555563 ABCC8Q09428 1581 aa24.48■■□□□ 1.51
SHMT2-219ENST00000555563 IFT140Q96RY7 1462 aa24.38■■□□□ 1.49
SHMT2-219ENST00000555563 CUX1P39880 1505 aa24.34■■□□□ 1.49
SHMT2-219ENST00000555563 POLA1P09884 1462 aaPredicted RBP24.33■■□□□ 1.49
SHMT2-219ENST00000555563 ZNF608Q9ULD9 1512 aaPredicted RBP24.31■■□□□ 1.48
SHMT2-219ENST00000555563 TARBP1Q13395 1621 aaKnown RBP24.29■■□□□ 1.48
SHMT2-219ENST00000555563 TRIM41Q8WV44 630 aa24.27■■□□□ 1.48
SHMT2-219ENST00000555563 FGD5Q6ZNL6 1462 aa24.26■■□□□ 1.47
SHMT2-219ENST00000555563 EIF4G3O43432 1585 aaKnown RBP24.25■■□□□ 1.47
SHMT2-219ENST00000555563 RAD54L2Q9Y4B4 1467 aa24.21■■□□□ 1.47
SHMT2-219ENST00000555563 SOGA1O94964 1423 aa24.18■■□□□ 1.46
SHMT2-219ENST00000555563 AQRO60306 1485 aaKnown RBP eCLIP24.13■■□□□ 1.454e-7■■■■□ 22.4
SHMT2-219ENST00000555563 WRNQ14191 1432 aaPredicted RBP eCLIP24.12■■□□□ 1.45
SHMT2-219ENST00000555563 WDR97A6NE52 1622 aa24.12■■□□□ 1.45
SHMT2-219ENST00000555563 BIVM-ERCC5R4GMW8 1640 aa24.12■■□□□ 1.45
SHMT2-219ENST00000555563 SYNJ1O43426 1573 aa24.12■■□□□ 1.45
SHMT2-219ENST00000555563 TOP2BQ02880 1626 aa24.1■■□□□ 1.45
SHMT2-219ENST00000555563 TDRD9Q8NDG6 1382 aaKnown RBP24.06■■□□□ 1.44
SHMT2-219ENST00000555563 OSCARQ8IYS5 282 aa24.05■■□□□ 1.44
SHMT2-219ENST00000555563 ABCA10Q8WWZ4 1543 aa24.01■■□□□ 1.43
SHMT2-219ENST00000555563 ABCA5Q8WWZ7 1642 aa23.97■■□□□ 1.43
SHMT2-219ENST00000555563 CHD1O14646 1710 aa23.96■■□□□ 1.43
SHMT2-219ENST00000555563 GRIN2BQ13224 1484 aa23.94■■□□□ 1.42
SHMT2-219ENST00000555563 SNAPC4Q5SXM2 1469 aa23.94■■□□□ 1.42
SHMT2-219ENST00000555563 PBRM1Q86U86 1689 aa23.94■■□□□ 1.42
SHMT2-219ENST00000555563 GAPVD1Q14C86 1478 aa23.92■■□□□ 1.42
SHMT2-219ENST00000555563 MAGI1Q96QZ7 1491 aaPredicted RBP23.9■■□□□ 1.42
SHMT2-219ENST00000555563 FBLN2P98095 1184 aa23.81■■□□□ 1.4
SHMT2-219ENST00000555563 SYNJ2O15056 1496 aa23.8■■□□□ 1.4
SHMT2-219ENST00000555563 ADAMTS12P58397 1594 aa23.75■■□□□ 1.39
SHMT2-219ENST00000555563 CHMP7Q8WUX9 453 aaPredicted RBP23.73■■□□□ 1.39
SHMT2-219ENST00000555563 ERICH3Q5RHP9 1530 aa23.72■■□□□ 1.39
SHMT2-219ENST00000555563 RIMBP3CA6NJZ7 1639 aa23.69■■□□□ 1.38
SHMT2-219ENST00000555563 RIMBP3BA6NNM3 1639 aa23.69■■□□□ 1.38
SHMT2-219ENST00000555563 RIMBP3Q9UFD9 1639 aa23.69■■□□□ 1.38
SHMT2-219ENST00000555563 CLASP1Q7Z460 1538 aa23.69■■□□□ 1.38
SHMT2-219ENST00000555563 ARHGEF11O15085 1522 aa23.66■■□□□ 1.38
SHMT2-219ENST00000555563 GRIN2AQ12879 1464 aa23.64■■□□□ 1.38
SHMT2-219ENST00000555563 FHAD1B1AJZ9 1412 aa23.64■■□□□ 1.37
SHMT2-219ENST00000555563 KIF27Q86VH2 1401 aa23.6■■□□□ 1.37
SHMT2-219ENST00000555563 CEP170Q5SW79 1584 aa23.56■■□□□ 1.36
SHMT2-219ENST00000555563 NUP160Q12769 1436 aa23.54■■□□□ 1.36
SHMT2-219ENST00000555563 CUL7Q14999 1698 aa23.52■■□□□ 1.36
SHMT2-219ENST00000555563 CYB5RLQ6IPT4 315 aa23.51■■□□□ 1.35
SHMT2-219ENST00000555563 IGF1RP08069 1367 aa23.5■■□□□ 1.35
SHMT2-219ENST00000555563 ARAP1Q96P48 1450 aa23.48■■□□□ 1.35
SHMT2-219ENST00000555563 RUSC2Q8N2Y8 1516 aa23.42■■□□□ 1.34
SHMT2-219ENST00000555563 SHROOM2Q13796 1616 aa23.41■■□□□ 1.34
SHMT2-219ENST00000555563 CARMIL1Q5VZK9 1371 aa23.36■■□□□ 1.33
SHMT2-219ENST00000555563 ERCC6L2Q5T890 1561 aa23.35■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms