RNA–Protein interactions for RNA: ENST00000554803.5

SRP54-205, Transcript of signal recognition particle 54, humanhuman

TSL 4

Gene SRP54, Length 572 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-205ENST00000554803 DEPDC5O75140 1603 aa17.08■□□□□ 0.32
SRP54-205ENST00000554803 CEP162Q5TB80 1403 aa17.08■□□□□ 0.32
SRP54-205ENST00000554803 SYNMO15061 1565 aa17.07■□□□□ 0.32
SRP54-205ENST00000554803 GGT6Q6P531 493 aa17.07■□□□□ 0.32
SRP54-205ENST00000554803 MED14O60244 1454 aa17.06■□□□□ 0.32
SRP54-205ENST00000554803 IQGAP1P46940 1657 aa17.06■□□□□ 0.32
SRP54-205ENST00000554803 CCDC18Q5T9S5 1454 aa17.05■□□□□ 0.32
SRP54-205ENST00000554803 LRRC7Q96NW7 1537 aa17.03■□□□□ 0.32
SRP54-205ENST00000554803 TNRQ92752 1358 aa17.02■□□□□ 0.32
SRP54-205ENST00000554803 HNRNPMP52272 730 aaKnown RBP eCLIP17.02■□□□□ 0.32
SRP54-205ENST00000554803 ANKLE2Q86XL3 938 aa17.02■□□□□ 0.32
SRP54-205ENST00000554803 ZNF777Q9ULD5 760 aaPredicted RBP17.02■□□□□ 0.32
SRP54-205ENST00000554803 NPHP4O75161 1426 aaPredicted RBP17.02■□□□□ 0.31
SRP54-205ENST00000554803 KIAA1107Q9UPP5 1409 aa17.02■□□□□ 0.31
SRP54-205ENST00000554803 PLEKHH2Q8IVE3 1493 aa17.01■□□□□ 0.31
SRP54-205ENST00000554803 SENP3Q9H4L4 574 aaPredicted RBP17.01■□□□□ 0.31
SRP54-205ENST00000554803 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.01■□□□□ 0.31
SRP54-205ENST00000554803 GPATCH8Q9UKJ3 1502 aaKnown RBP17.01■□□□□ 0.31
SRP54-205ENST00000554803 XIRP1Q702N8 1843 aaKnown RBP17■□□□□ 0.31
SRP54-205ENST00000554803 PZPP20742 1482 aa16.99■□□□□ 0.31
SRP54-205ENST00000554803 SETD1AO15047 1707 aaKnown RBP16.99■□□□□ 0.31
SRP54-205ENST00000554803 UGGT1Q9NYU2 1555 aa16.99■□□□□ 0.31
SRP54-205ENST00000554803 FAM135AQ9P2D6 1515 aa16.99■□□□□ 0.31
SRP54-205ENST00000554803 CASKIN1Q8WXD9 1431 aa16.98■□□□□ 0.31
SRP54-205ENST00000554803 THEMISQ8N1K5 641 aaPredicted RBP16.97■□□□□ 0.31
SRP54-205ENST00000554803 NLRP1Q9C000 1473 aa16.97■□□□□ 0.31
SRP54-205ENST00000554803 ZC3H13Q5T200 1668 aaKnown RBP16.97■□□□□ 0.31
SRP54-205ENST00000554803 KDM5DQ9BY66 1539 aa16.96■□□□□ 0.31
SRP54-205ENST00000554803 FBXO31Q5XUX0 539 aaPredicted RBP16.96■□□□□ 0.31
SRP54-205ENST00000554803 POTEAQ6S8J7 498 aa16.96■□□□□ 0.31
SRP54-205ENST00000554803 MIA2Q96PC5 1412 aa16.93■□□□□ 0.3
SRP54-205ENST00000554803 DHX29Q7Z478 1369 aaKnown RBP16.9■□□□□ 0.3
SRP54-205ENST00000554803 RTEL1-TNFRSF6BF6WH68 1400 aa16.9■□□□□ 0.3
SRP54-205ENST00000554803 PPARGC1BQ86YN6 1023 aaKnown RBP16.9■□□□□ 0.3
SRP54-205ENST00000554803 FYCO1Q9BQS8 1478 aa16.9■□□□□ 0.3
SRP54-205ENST00000554803 CFDP1Q9UEE9 299 aaPredicted RBP16.89■□□□□ 0.29
SRP54-205ENST00000554803 FAM135BQ49AJ0 1406 aa16.87■□□□□ 0.29
SRP54-205ENST00000554803 MBD5Q9P267 1494 aa16.86■□□□□ 0.29
SRP54-205ENST00000554803 UBR1Q8IWV7 1749 aa16.86■□□□□ 0.29
SRP54-205ENST00000554803 CCNB3Q8WWL7 1395 aa16.86■□□□□ 0.29
SRP54-205ENST00000554803 KIF3BO15066 747 aa16.85■□□□□ 0.29
SRP54-205ENST00000554803 CFAP65Q6ZU64 1925 aaKnown RBP16.85■□□□□ 0.29
SRP54-205ENST00000554803 ROBO1Q9Y6N7 1651 aa16.85■□□□□ 0.29
SRP54-205ENST00000554803 WASHC2CQ9Y4E1 1318 aa16.84■□□□□ 0.29
SRP54-205ENST00000554803 TIAM1Q13009 1591 aa16.82■□□□□ 0.28
SRP54-205ENST00000554803 VPS8Q8N3P4 1428 aa16.81■□□□□ 0.28
SRP54-205ENST00000554803 SCAF11Q99590 1463 aaKnown RBP16.8■□□□□ 0.28
SRP54-205ENST00000554803 ZNF644Q9H582 1327 aaPredicted RBP16.79■□□□□ 0.28
SRP54-205ENST00000554803 PHLPP1O60346 1717 aa16.77■□□□□ 0.28
SRP54-205ENST00000554803 ERVK-7P63135 1459 aa16.77■□□□□ 0.28
SRP54-205ENST00000554803 ABCC3O15438 1527 aa16.76■□□□□ 0.27
SRP54-205ENST00000554803 SLIT1O75093 1534 aa16.76■□□□□ 0.27
SRP54-205ENST00000554803 CCDC141Q6ZP82 1450 aa16.76■□□□□ 0.27
SRP54-205ENST00000554803 ARHGAP23Q9P227 1491 aa16.76■□□□□ 0.27
SRP54-205ENST00000554803 UPF1Q92900 1129 aaKnown RBP eCLIP16.76■□□□□ 0.27
SRP54-205ENST00000554803 NCOA2Q15596 1464 aa16.74■□□□□ 0.27
SRP54-205ENST00000554803 LRRC9Q6ZRR7 1453 aa16.74■□□□□ 0.27
SRP54-205ENST00000554803 MAP3K1Q13233 1512 aa16.74■□□□□ 0.27
SRP54-205ENST00000554803 CEP152O94986 1710 aa16.73■□□□□ 0.27
SRP54-205ENST00000554803 MTUS2Q5JR59 1369 aa16.73■□□□□ 0.27
SRP54-205ENST00000554803 SRCAPQ6ZRS2 3230 aa16.72■□□□□ 0.27
SRP54-205ENST00000554803 LTKP29376 864 aa16.71■□□□□ 0.27
SRP54-205ENST00000554803 EHBP1L1Q8N3D4 1523 aa16.7■□□□□ 0.26
SRP54-205ENST00000554803 TMEM94Q12767 1356 aa16.7■□□□□ 0.26
SRP54-205ENST00000554803 EIF2AK4Q9P2K8 1649 aaKnown RBP16.7■□□□□ 0.26
SRP54-205ENST00000554803 CAMSAP2Q08AD1 1489 aa16.69■□□□□ 0.26
SRP54-205ENST00000554803 JCADQ9P266 1359 aa16.69■□□□□ 0.26
SRP54-205ENST00000554803 MROH1Q8NDA8 1641 aa16.69■□□□□ 0.26
SRP54-205ENST00000554803 COL16A1Q07092 1604 aaPredicted RBP16.68■□□□□ 0.26
SRP54-205ENST00000554803 TXNDC2Q86VQ3 553 aa16.68■□□□□ 0.26
SRP54-205ENST00000554803 ARHGEF5Q12774 1597 aa16.68■□□□□ 0.26
SRP54-205ENST00000554803 RSPH4AQ5TD94 716 aa16.67■□□□□ 0.26
SRP54-205ENST00000554803 PELP1Q8IZL8 1130 aaKnown RBP16.66■□□□□ 0.26
SRP54-205ENST00000554803 PIK3C2BO00750 1634 aa16.66■□□□□ 0.26
SRP54-205ENST00000554803 KDM5AP29375 1690 aaKnown RBP16.65■□□□□ 0.26
SRP54-205ENST00000554803 PRDM15P57071 1507 aaPredicted RBP16.65■□□□□ 0.26
SRP54-205ENST00000554803 NWD1Q149M9 1564 aa16.65■□□□□ 0.26
SRP54-205ENST00000554803 LRP6O75581 1613 aa16.65■□□□□ 0.26
SRP54-205ENST00000554803 EID1Q9Y6B2 187 aa16.64■□□□□ 0.25
SRP54-205ENST00000554803 SHPRHQ149N8 1683 aa16.63■□□□□ 0.25
SRP54-205ENST00000554803 NKTRP30414 1462 aaKnown RBP16.63■□□□□ 0.25
SRP54-205ENST00000554803 KCNA6P17658 529 aa16.63■□□□□ 0.25
SRP54-205ENST00000554803 ZNF772Q68DY9 489 aaPredicted RBP16.63■□□□□ 0.25
SRP54-205ENST00000554803 TRIM52Q96A61 297 aa16.63■□□□□ 0.25
SRP54-205ENST00000554803 MAST1Q9Y2H9 1570 aa16.63■□□□□ 0.25
SRP54-205ENST00000554803 TET3O43151 1660 aa16.62■□□□□ 0.25
SRP54-205ENST00000554803 CDK12Q9NYV4 1490 aaPredicted RBP16.61■□□□□ 0.25
SRP54-205ENST00000554803 PROSER2Q86WR7 435 aaPredicted RBP16.61■□□□□ 0.25
SRP54-205ENST00000554803 FGD6Q6ZV73 1430 aa16.61■□□□□ 0.25
SRP54-205ENST00000554803 SPATA31A6Q5VVP1 1343 aa16.6■□□□□ 0.25
SRP54-205ENST00000554803 MSH6P52701 1360 aa16.6■□□□□ 0.25
SRP54-205ENST00000554803 TMEM2Q9UHN6 1383 aa16.6■□□□□ 0.25
SRP54-205ENST00000554803 ARHGAP31Q2M1Z3 1444 aa16.59■□□□□ 0.25
SRP54-205ENST00000554803 CHD2O14647 1828 aaKnown RBP16.59■□□□□ 0.25
SRP54-205ENST00000554803 TSPY4P0CV99 314 aa16.58■□□□□ 0.24
SRP54-205ENST00000554803 TSPY10P0CW01 314 aa16.58■□□□□ 0.24
SRP54-205ENST00000554803 RBM33Q96EV2 1170 aaKnown RBP16.58■□□□□ 0.24
SRP54-205ENST00000554803 SLAIN2Q9P270 581 aa16.58■□□□□ 0.24
SRP54-205ENST00000554803 MEX3CQ5U5Q3 659 aaKnown RBP16.57■□□□□ 0.24
SRP54-205ENST00000554803 EFCAB6Q5THR3 1501 aa16.56■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms