RNA–Protein interactions for RNA: ENST00000554803.5

SRP54-205, Transcript of signal recognition particle 54, humanhuman

TSL 4

Gene SRP54, Length 572 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-205ENST00000554803 NISCHQ9Y2I1 1504 aa26.65■■□□□ 1.86
SRP54-205ENST00000554803 ABCC9O60706 1549 aa24.85■■□□□ 1.57
SRP54-205ENST00000554803 CCDC180Q9P1Z9 1646 aa24.32■■□□□ 1.48
SRP54-205ENST00000554803 DNAJC5BQ9UF47 199 aa23.89■■□□□ 1.41
SRP54-205ENST00000554803 RB1CC1Q8TDY2 1594 aa23.42■■□□□ 1.34
SRP54-205ENST00000554803 NACADO15069 1562 aa23.09■■□□□ 1.29
SRP54-205ENST00000554803 UNC13AQ9UPW8 1703 aa23.02■■□□□ 1.28
SRP54-205ENST00000554803 PABPN1Q86U42 306 aaKnown RBP eCLIP22.96■■□□□ 1.27
SRP54-205ENST00000554803 BICRAQ9NZM4 1560 aa22.79■■□□□ 1.24
SRP54-205ENST00000554803 DCAF8L2P0C7V8 631 aa22.64■■□□□ 1.21
SRP54-205ENST00000554803 MYO15BQ96JP2 1530 aa22.56■■□□□ 1.2
SRP54-205ENST00000554803 CC2D2AQ9P2K1 1620 aa22.48■■□□□ 1.19
SRP54-205ENST00000554803 CECR2Q9BXF3 1484 aa22.47■■□□□ 1.19
SRP54-205ENST00000554803 DNAJC5Q9H3Z4 198 aa22.47■■□□□ 1.19
SRP54-205ENST00000554803 SHROOM4Q9ULL8 1493 aa22.41■■□□□ 1.18
SRP54-205ENST00000554803 EIF4G1Q04637 1599 aaKnown RBP22.26■■□□□ 1.15
SRP54-205ENST00000554803 SCRIBQ14160 1630 aa22.03■■□□□ 1.12
SRP54-205ENST00000554803 DCAF1Q9Y4B6 1507 aa22.01■■□□□ 1.11
SRP54-205ENST00000554803 ZCCHC6Q5VYS8 1495 aaKnown RBP21.95■■□□□ 1.1
SRP54-205ENST00000554803 CUX2O14529 1486 aa21.76■■□□□ 1.07
SRP54-205ENST00000554803 ERCC6Q03468 1493 aa21.51■■□□□ 1.03
SRP54-205ENST00000554803 NCAPD3P42695 1498 aa21.28■■□□□ 1
SRP54-205ENST00000554803 THOC2Q8NI27 1593 aaKnown RBP21.17■□□□□ 0.98
SRP54-205ENST00000554803 NESP48681 1621 aa21.17■□□□□ 0.98
SRP54-205ENST00000554803 TRIM41Q8WV44 630 aa21.14■□□□□ 0.97
SRP54-205ENST00000554803 ATAD2BQ9ULI0 1458 aa21.12■□□□□ 0.97
SRP54-205ENST00000554803 HMGXB3Q12766 1538 aa21.11■□□□□ 0.97
SRP54-205ENST00000554803 SMARCA2P51531 1590 aa21.06■□□□□ 0.96
SRP54-205ENST00000554803 SMARCA4P51532 1647 aa20.98■□□□□ 0.95
SRP54-205ENST00000554803 KIF21AQ7Z4S6 1674 aa20.98■□□□□ 0.95
SRP54-205ENST00000554803 LAMC3Q9Y6N6 1575 aa20.97■□□□□ 0.95
SRP54-205ENST00000554803 BAZ1BQ9UIG0 1483 aaKnown RBP20.88■□□□□ 0.93
SRP54-205ENST00000554803 PDS5BQ9NTI5 1447 aa20.8■□□□□ 0.92
SRP54-205ENST00000554803 PEG3Q9GZU2 1588 aa20.8■□□□□ 0.92
SRP54-205ENST00000554803 BAZ1AQ9NRL2 1556 aaPredicted RBP20.75■□□□□ 0.91
SRP54-205ENST00000554803 WDR62O43379 1518 aa20.69■□□□□ 0.9
SRP54-205ENST00000554803 MRC2Q9UBG0 1479 aa20.69■□□□□ 0.9
SRP54-205ENST00000554803 CADPSQ9ULU8 1353 aa20.58■□□□□ 0.88
SRP54-205ENST00000554803 OSCARQ8IYS5 282 aa20.57■□□□□ 0.88
SRP54-205ENST00000554803 MROH2BQ7Z745 1585 aa20.51■□□□□ 0.87
SRP54-205ENST00000554803 RIMBP3CA6NJZ7 1639 aa20.49■□□□□ 0.87
SRP54-205ENST00000554803 RIMBP3BA6NNM3 1639 aa20.49■□□□□ 0.87
SRP54-205ENST00000554803 RIMBP3Q9UFD9 1639 aa20.49■□□□□ 0.87
SRP54-205ENST00000554803 CEP164Q9UPV0 1460 aa20.46■□□□□ 0.87
SRP54-205ENST00000554803 FANCD2Q9BXW9 1451 aa20.37■□□□□ 0.85
SRP54-205ENST00000554803 ARHGEF11O15085 1522 aa20.32■□□□□ 0.84
SRP54-205ENST00000554803 WIZO95785 1651 aa20.28■□□□□ 0.84
SRP54-205ENST00000554803 URB2Q14146 1524 aaKnown RBP20.26■□□□□ 0.83
SRP54-205ENST00000554803 CFTRP13569 1480 aa20.23■□□□□ 0.83
SRP54-205ENST00000554803 PRDM2Q13029 1718 aa20.14■□□□□ 0.81
SRP54-205ENST00000554803 CYB5RLQ6IPT4 315 aa20.11■□□□□ 0.81
SRP54-205ENST00000554803 TRHP20396 242 aaPredicted RBP20.1■□□□□ 0.81
SRP54-205ENST00000554803 ZNF608Q9ULD9 1512 aaPredicted RBP20.1■□□□□ 0.81
SRP54-205ENST00000554803 IFT140Q96RY7 1462 aa20.08■□□□□ 0.81
SRP54-205ENST00000554803 ARAP1Q96P48 1450 aa20.05■□□□□ 0.8
SRP54-205ENST00000554803 CHD1O14646 1710 aa20.05■□□□□ 0.8
SRP54-205ENST00000554803 AEBP2Q6ZN18 517 aaPredicted RBP20.03■□□□□ 0.8
SRP54-205ENST00000554803 EIF4G3O43432 1585 aaKnown RBP20.02■□□□□ 0.8
SRP54-205ENST00000554803 TOP2AP11388 1531 aaKnown RBP19.96■□□□□ 0.79
SRP54-205ENST00000554803 RSF1Q96T23 1441 aaPredicted RBP19.95■□□□□ 0.78
SRP54-205ENST00000554803 TOPBP1Q92547 1522 aa19.92■□□□□ 0.78
SRP54-205ENST00000554803 TARBP1Q13395 1621 aaKnown RBP19.84■□□□□ 0.77
SRP54-205ENST00000554803 ABCC8Q09428 1581 aa19.83■□□□□ 0.77
SRP54-205ENST00000554803 DNMBPQ6XZF7 1577 aa19.81■□□□□ 0.76
SRP54-205ENST00000554803 AQRO60306 1485 aaKnown RBP eCLIP19.8■□□□□ 0.767e-7■■□□□ 14.1
SRP54-205ENST00000554803 FBLN2P98095 1184 aa19.76■□□□□ 0.75
SRP54-205ENST00000554803 CLASP1Q7Z460 1538 aa19.76■□□□□ 0.75
SRP54-205ENST00000554803 CCDC88BA6NC98 1476 aa19.69■□□□□ 0.74
SRP54-205ENST00000554803 SYNJ1O43426 1573 aa19.67■□□□□ 0.74
SRP54-205ENST00000554803 POLA1P09884 1462 aaPredicted RBP19.67■□□□□ 0.74
SRP54-205ENST00000554803 WDR97A6NE52 1622 aa19.62■□□□□ 0.73
SRP54-205ENST00000554803 SNAPC4Q5SXM2 1469 aa19.61■□□□□ 0.73
SRP54-205ENST00000554803 RAD54L2Q9Y4B4 1467 aa19.58■□□□□ 0.72
SRP54-205ENST00000554803 TDRD9Q8NDG6 1382 aaKnown RBP19.56■□□□□ 0.72
SRP54-205ENST00000554803 MAGI1Q96QZ7 1491 aaPredicted RBP19.55■□□□□ 0.72
SRP54-205ENST00000554803 GAPVD1Q14C86 1478 aa19.54■□□□□ 0.72
SRP54-205ENST00000554803 SOGA1O94964 1423 aa19.52■□□□□ 0.72
SRP54-205ENST00000554803 CHMP7Q8WUX9 453 aaPredicted RBP19.52■□□□□ 0.72
SRP54-205ENST00000554803 SYNJ2O15056 1496 aa19.48■□□□□ 0.71
SRP54-205ENST00000554803 GRIN2BQ13224 1484 aa19.47■□□□□ 0.71
SRP54-205ENST00000554803 PBRM1Q86U86 1689 aa19.46■□□□□ 0.71
SRP54-205ENST00000554803 KIF13AQ9H1H9 1805 aa19.44■□□□□ 0.7
SRP54-205ENST00000554803 FGD5Q6ZNL6 1462 aa19.44■□□□□ 0.7
SRP54-205ENST00000554803 ERCC6L2Q5T890 1561 aa19.36■□□□□ 0.69
SRP54-205ENST00000554803 CUX1P39880 1505 aa19.32■□□□□ 0.68
SRP54-205ENST00000554803 CEP170Q5SW79 1584 aa19.28■□□□□ 0.68
SRP54-205ENST00000554803 ABCA5Q8WWZ7 1642 aa19.27■□□□□ 0.68
SRP54-205ENST00000554803 ILDR1Q86SU0 546 aaPredicted RBP19.27■□□□□ 0.68
SRP54-205ENST00000554803 SHROOM2Q13796 1616 aa19.25■□□□□ 0.67
SRP54-205ENST00000554803 GRIN2AQ12879 1464 aa19.22■□□□□ 0.67
SRP54-205ENST00000554803 ABCA10Q8WWZ4 1543 aa19.19■□□□□ 0.66
SRP54-205ENST00000554803 NUP160Q12769 1436 aa19.18■□□□□ 0.66
SRP54-205ENST00000554803 ADAMTS12P58397 1594 aa19.17■□□□□ 0.66
SRP54-205ENST00000554803 KDM4FA0A1W2PPD8 638 aa19.15■□□□□ 0.66
SRP54-205ENST00000554803 ABCC10Q5T3U5 1492 aa19.12■□□□□ 0.65
SRP54-205ENST00000554803 KDM6BO15054 1643 aa19.11■□□□□ 0.65
SRP54-205ENST00000554803 DIP2BQ9P265 1576 aa19.1■□□□□ 0.65
SRP54-205ENST00000554803 MAPKBP1O60336 1514 aa19.08■□□□□ 0.64
SRP54-205ENST00000554803 FAM69CQ0P6D2 419 aa19.07■□□□□ 0.64
SRP54-205ENST00000554803 TSPOAP1O95153 1857 aa19.05■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms