RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 ADGBQ8N7X0 1667 aa21.2■□□□□ 0.98
VPS29-211ENST00000553128 POLR1AO95602 1720 aaPredicted RBP21.2■□□□□ 0.98
VPS29-211ENST00000553128 TNRQ92752 1358 aa21.19■□□□□ 0.98
VPS29-211ENST00000553128 VWDEQ8N2E2 1590 aa21.19■□□□□ 0.98
VPS29-211ENST00000553128 CHIC1Q5VXU3 224 aa21.17■□□□□ 0.98
VPS29-211ENST00000553128 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.17■□□□□ 0.98
VPS29-211ENST00000553128 MBD5Q9P267 1494 aa21.17■□□□□ 0.98
VPS29-211ENST00000553128 SENP3Q9H4L4 574 aaPredicted RBP21.16■□□□□ 0.98
VPS29-211ENST00000553128 DHX29Q7Z478 1369 aaKnown RBP21.15■□□□□ 0.98
VPS29-211ENST00000553128 PHF23Q9BUL5 403 aaPredicted RBP21.15■□□□□ 0.98
VPS29-211ENST00000553128 PZPP20742 1482 aa21.13■□□□□ 0.97
VPS29-211ENST00000553128 TIAM1Q13009 1591 aa21.12■□□□□ 0.97
VPS29-211ENST00000553128 KIF3BO15066 747 aa21.12■□□□□ 0.97
VPS29-211ENST00000553128 ANKLE2Q86XL3 938 aa21.12■□□□□ 0.97
VPS29-211ENST00000553128 RTEL1-TNFRSF6BF6WH68 1400 aa21.11■□□□□ 0.97
VPS29-211ENST00000553128 NPHP4O75161 1426 aaPredicted RBP21.11■□□□□ 0.97
VPS29-211ENST00000553128 MTUS2Q5JR59 1369 aa21.1■□□□□ 0.97
VPS29-211ENST00000553128 KDM5DQ9BY66 1539 aa21.09■□□□□ 0.97
VPS29-211ENST00000553128 MED14O60244 1454 aa21.08■□□□□ 0.97
VPS29-211ENST00000553128 MIA2Q96PC5 1412 aa21.08■□□□□ 0.97
VPS29-211ENST00000553128 STRCP1A6NGW2 1772 aa21.08■□□□□ 0.96
VPS29-211ENST00000553128 UGGT1Q9NYU2 1555 aa21.07■□□□□ 0.96
VPS29-211ENST00000553128 THEMISQ8N1K5 641 aaPredicted RBP21.07■□□□□ 0.96
VPS29-211ENST00000553128 WASHC2CQ9Y4E1 1318 aa21.06■□□□□ 0.96
VPS29-211ENST00000553128 LRRC7Q96NW7 1537 aa21.05■□□□□ 0.96
VPS29-211ENST00000553128 DEPDC5O75140 1603 aa21.05■□□□□ 0.96
VPS29-211ENST00000553128 RGS17Q9UGC6 210 aaPredicted RBP21.04■□□□□ 0.96
VPS29-211ENST00000553128 NLRP1Q9C000 1473 aa21.04■□□□□ 0.96
VPS29-211ENST00000553128 FAM135AQ9P2D6 1515 aa21.03■□□□□ 0.96
VPS29-211ENST00000553128 IQGAP1P46940 1657 aa21.02■□□□□ 0.96
VPS29-211ENST00000553128 CCDC141Q6ZP82 1450 aa21.01■□□□□ 0.95
VPS29-211ENST00000553128 EHBP1L1Q8N3D4 1523 aa20.99■□□□□ 0.95
VPS29-211ENST00000553128 RNF17Q9BXT8 1623 aaKnown RBP20.99■□□□□ 0.95
VPS29-211ENST00000553128 CEP162Q5TB80 1403 aa20.98■□□□□ 0.95
VPS29-211ENST00000553128 CAMSAP2Q08AD1 1489 aa20.97■□□□□ 0.95
VPS29-211ENST00000553128 SYNMO15061 1565 aa20.95■□□□□ 0.94
VPS29-211ENST00000553128 ZC3H13Q5T200 1668 aaKnown RBP20.93■□□□□ 0.94
VPS29-211ENST00000553128 ABCC3O15438 1527 aa20.93■□□□□ 0.94
VPS29-211ENST00000553128 ERVK-7P63135 1459 aa20.91■□□□□ 0.94
VPS29-211ENST00000553128 NCOA2Q15596 1464 aa20.9■□□□□ 0.94
VPS29-211ENST00000553128 LTKP29376 864 aa20.88■□□□□ 0.93
VPS29-211ENST00000553128 RSPH4AQ5TD94 716 aa20.88■□□□□ 0.93
VPS29-211ENST00000553128 POTEAQ6S8J7 498 aa20.88■□□□□ 0.93
VPS29-211ENST00000553128 XIRP1Q702N8 1843 aaKnown RBP20.87■□□□□ 0.93
VPS29-211ENST00000553128 UBR1Q8IWV7 1749 aa20.87■□□□□ 0.93
VPS29-211ENST00000553128 ARHGEF5Q12774 1597 aa20.86■□□□□ 0.93
VPS29-211ENST00000553128 SCAF11Q99590 1463 aaKnown RBP20.86■□□□□ 0.93
VPS29-211ENST00000553128 TSPY4P0CV99 314 aa20.85■□□□□ 0.93
VPS29-211ENST00000553128 TSPY10P0CW01 314 aa20.85■□□□□ 0.93
VPS29-211ENST00000553128 MROH1Q8NDA8 1641 aa20.85■□□□□ 0.93
VPS29-211ENST00000553128 ARHGAP23Q9P227 1491 aa20.82■□□□□ 0.92
VPS29-211ENST00000553128 TXNDC2Q86VQ3 553 aa20.82■□□□□ 0.92
VPS29-211ENST00000553128 CEP152O94986 1710 aa20.81■□□□□ 0.92
VPS29-211ENST00000553128 CFAP65Q6ZU64 1925 aaKnown RBP20.8■□□□□ 0.92
VPS29-211ENST00000553128 FAM135BQ49AJ0 1406 aa20.8■□□□□ 0.92
VPS29-211ENST00000553128 SLIT1O75093 1534 aa20.8■□□□□ 0.92
VPS29-211ENST00000553128 MAST1Q9Y2H9 1570 aa20.77■□□□□ 0.92
VPS29-211ENST00000553128 EIF2AK4Q9P2K8 1649 aaKnown RBP20.77■□□□□ 0.92
VPS29-211ENST00000553128 RBM33Q96EV2 1170 aaKnown RBP20.76■□□□□ 0.91
VPS29-211ENST00000553128 TMEM94Q12767 1356 aa20.75■□□□□ 0.91
VPS29-211ENST00000553128 SETD1AO15047 1707 aaKnown RBP20.73■□□□□ 0.91
VPS29-211ENST00000553128 ROBO1Q9Y6N7 1651 aa20.73■□□□□ 0.91
VPS29-211ENST00000553128 MAP3K1Q13233 1512 aa20.72■□□□□ 0.91
VPS29-211ENST00000553128 PIK3C2BO00750 1634 aa20.71■□□□□ 0.91
VPS29-211ENST00000553128 EID1Q9Y6B2 187 aa20.71■□□□□ 0.91
VPS29-211ENST00000553128 TMEM2Q9UHN6 1383 aa20.71■□□□□ 0.91
VPS29-211ENST00000553128 ARHGAP31Q2M1Z3 1444 aa20.7■□□□□ 0.9
VPS29-211ENST00000553128 SLC26A8Q96RN1 970 aa20.68■□□□□ 0.9
VPS29-211ENST00000553128 DUOX2Q9NRD8 1548 aa20.68■□□□□ 0.9
VPS29-211ENST00000553128 KCNA6P17658 529 aa20.67■□□□□ 0.9
VPS29-211ENST00000553128 LRRC9Q6ZRR7 1453 aa20.67■□□□□ 0.9
VPS29-211ENST00000553128 PRDM15P57071 1507 aaPredicted RBP20.67■□□□□ 0.9
VPS29-211ENST00000553128 PROSER2Q86WR7 435 aaPredicted RBP20.66■□□□□ 0.9
VPS29-211ENST00000553128 TET3O43151 1660 aa20.65■□□□□ 0.9
VPS29-211ENST00000553128 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.64■□□□□ 0.89
VPS29-211ENST00000553128 KIF15Q9NS87 1388 aa20.63■□□□□ 0.89
VPS29-211ENST00000553128 IDI1Q13907 227 aa20.63■□□□□ 0.89
VPS29-211ENST00000553128 KANK4Q5T7N3 995 aaPredicted RBP20.63■□□□□ 0.89
VPS29-211ENST00000553128 STAG3Q9UJ98 1225 aa20.63■□□□□ 0.89
VPS29-211ENST00000553128 EFCAB6Q5THR3 1501 aa20.63■□□□□ 0.89
VPS29-211ENST00000553128 RRP7BPQ9NSQ0 103 aa20.61■□□□□ 0.89
VPS29-211ENST00000553128 MYOM3Q5VTT5 1437 aa20.6■□□□□ 0.89
VPS29-211ENST00000553128 PHLPP1O60346 1717 aa20.59■□□□□ 0.89
VPS29-211ENST00000553128 ERBINQ96RT1 1412 aa20.59■□□□□ 0.89
VPS29-211ENST00000553128 NWD1Q149M9 1564 aa20.59■□□□□ 0.89
VPS29-211ENST00000553128 SLAIN2Q9P270 581 aa20.58■□□□□ 0.89
VPS29-211ENST00000553128 JCADQ9P266 1359 aa20.58■□□□□ 0.88
VPS29-211ENST00000553128 NKTRP30414 1462 aaKnown RBP20.57■□□□□ 0.88
VPS29-211ENST00000553128 LRP6O75581 1613 aa20.56■□□□□ 0.88
VPS29-211ENST00000553128 ABCC5O15440 1437 aa20.56■□□□□ 0.88
VPS29-211ENST00000553128 KDM5AP29375 1690 aaKnown RBP20.56■□□□□ 0.88
VPS29-211ENST00000553128 MSH6P52701 1360 aa20.56■□□□□ 0.88
VPS29-211ENST00000553128 UPF1Q92900 1129 aaKnown RBP eCLIP20.55■□□□□ 0.88
VPS29-211ENST00000553128 COL16A1Q07092 1604 aaPredicted RBP20.54■□□□□ 0.88
VPS29-211ENST00000553128 ADGRB3O60242 1522 aa20.53■□□□□ 0.88
VPS29-211ENST00000553128 LMTK2Q8IWU2 1503 aa20.53■□□□□ 0.88
VPS29-211ENST00000553128 VPS8Q8N3P4 1428 aa20.53■□□□□ 0.88
VPS29-211ENST00000553128 CROCC2H7BZ55 1655 aa20.52■□□□□ 0.88
VPS29-211ENST00000553128 TRIM52Q96A61 297 aa20.52■□□□□ 0.88
VPS29-211ENST00000553128 NOS1P29475 1434 aa20.52■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 166.5 ms