RNA–Protein interactions for RNA: ENST00000551655.1

VPS29-209, Transcript of VPS29, retromer complex component, humanhuman

TSL 5

Gene VPS29, Length 766 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-209ENST00000551655 STRCP1A6NGW2 1772 aa23.96■■□□□ 1.43
VPS29-209ENST00000551655 ADGBQ8N7X0 1667 aa23.96■■□□□ 1.43
VPS29-209ENST00000551655 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.96■■□□□ 1.43
VPS29-209ENST00000551655 TNRQ92752 1358 aa23.95■■□□□ 1.42
VPS29-209ENST00000551655 KIAA1107Q9UPP5 1409 aa23.92■■□□□ 1.42
VPS29-209ENST00000551655 NPHP4O75161 1426 aaPredicted RBP23.91■■□□□ 1.42
VPS29-209ENST00000551655 ANKLE2Q86XL3 938 aa23.9■■□□□ 1.42
VPS29-209ENST00000551655 LRRC7Q96NW7 1537 aa23.89■■□□□ 1.41
VPS29-209ENST00000551655 RNF17Q9BXT8 1623 aaKnown RBP23.88■■□□□ 1.41
VPS29-209ENST00000551655 CFDP1Q9UEE9 299 aaPredicted RBP23.88■■□□□ 1.41
VPS29-209ENST00000551655 IQGAP1P46940 1657 aa23.88■■□□□ 1.41
VPS29-209ENST00000551655 PLEKHH2Q8IVE3 1493 aa23.87■■□□□ 1.41
VPS29-209ENST00000551655 DEPDC5O75140 1603 aa23.87■■□□□ 1.41
VPS29-209ENST00000551655 PZPP20742 1482 aa23.87■■□□□ 1.41
VPS29-209ENST00000551655 MED14O60244 1454 aa23.86■■□□□ 1.41
VPS29-209ENST00000551655 UGGT1Q9NYU2 1555 aa23.85■■□□□ 1.41
VPS29-209ENST00000551655 ZNF644Q9H582 1327 aaPredicted RBP23.84■■□□□ 1.41
VPS29-209ENST00000551655 FYCO1Q9BQS8 1478 aa23.83■■□□□ 1.41
VPS29-209ENST00000551655 KDM5DQ9BY66 1539 aa23.83■■□□□ 1.41
VPS29-209ENST00000551655 CCNB3Q8WWL7 1395 aa23.82■■□□□ 1.4
VPS29-209ENST00000551655 SYNMO15061 1565 aa23.82■■□□□ 1.4
VPS29-209ENST00000551655 KIF3BO15066 747 aa23.8■■□□□ 1.4
VPS29-209ENST00000551655 POTEAQ6S8J7 498 aa23.8■■□□□ 1.4
VPS29-209ENST00000551655 THEMISQ8N1K5 641 aaPredicted RBP23.8■■□□□ 1.4
VPS29-209ENST00000551655 FAM135AQ9P2D6 1515 aa23.79■■□□□ 1.4
VPS29-209ENST00000551655 DHX29Q7Z478 1369 aaKnown RBP23.79■■□□□ 1.4
VPS29-209ENST00000551655 MIA2Q96PC5 1412 aa23.79■■□□□ 1.4
VPS29-209ENST00000551655 MBD5Q9P267 1494 aa23.79■■□□□ 1.4
VPS29-209ENST00000551655 SETD1AO15047 1707 aaKnown RBP23.79■■□□□ 1.4
VPS29-209ENST00000551655 NLRP1Q9C000 1473 aa23.78■■□□□ 1.4
VPS29-209ENST00000551655 ZC3H13Q5T200 1668 aaKnown RBP23.75■■□□□ 1.39
VPS29-209ENST00000551655 XIRP1Q702N8 1843 aaKnown RBP23.75■■□□□ 1.39
VPS29-209ENST00000551655 TIAM1Q13009 1591 aa23.74■■□□□ 1.39
VPS29-209ENST00000551655 WASHC2CQ9Y4E1 1318 aa23.74■■□□□ 1.39
VPS29-209ENST00000551655 RTEL1-TNFRSF6BF6WH68 1400 aa23.72■■□□□ 1.39
VPS29-209ENST00000551655 MTUS2Q5JR59 1369 aa23.66■■□□□ 1.38
VPS29-209ENST00000551655 UBR1Q8IWV7 1749 aa23.62■■□□□ 1.37
VPS29-209ENST00000551655 CCDC141Q6ZP82 1450 aa23.62■■□□□ 1.37
VPS29-209ENST00000551655 ERVK-7P63135 1459 aa23.6■■□□□ 1.37
VPS29-209ENST00000551655 SCAF11Q99590 1463 aaKnown RBP23.6■■□□□ 1.37
VPS29-209ENST00000551655 ABCC3O15438 1527 aa23.59■■□□□ 1.37
VPS29-209ENST00000551655 ROBO1Q9Y6N7 1651 aa23.59■■□□□ 1.37
VPS29-209ENST00000551655 CFAP65Q6ZU64 1925 aaKnown RBP23.59■■□□□ 1.37
VPS29-209ENST00000551655 FAM135BQ49AJ0 1406 aa23.59■■□□□ 1.37
VPS29-209ENST00000551655 LTKP29376 864 aa23.58■■□□□ 1.37
VPS29-209ENST00000551655 NCOA2Q15596 1464 aa23.57■■□□□ 1.36
VPS29-209ENST00000551655 CAMSAP2Q08AD1 1489 aa23.56■■□□□ 1.36
VPS29-209ENST00000551655 EHBP1L1Q8N3D4 1523 aa23.55■■□□□ 1.36
VPS29-209ENST00000551655 CEP152O94986 1710 aa23.54■■□□□ 1.36
VPS29-209ENST00000551655 RBM33Q96EV2 1170 aaKnown RBP23.52■■□□□ 1.36
VPS29-209ENST00000551655 ARHGAP23Q9P227 1491 aa23.51■■□□□ 1.35
VPS29-209ENST00000551655 TXNDC2Q86VQ3 553 aa23.51■■□□□ 1.35
VPS29-209ENST00000551655 MROH1Q8NDA8 1641 aa23.51■■□□□ 1.35
VPS29-209ENST00000551655 TMEM94Q12767 1356 aa23.51■■□□□ 1.35
VPS29-209ENST00000551655 CEP162Q5TB80 1403 aa23.5■■□□□ 1.35
VPS29-209ENST00000551655 SLIT1O75093 1534 aa23.5■■□□□ 1.35
VPS29-209ENST00000551655 MAP3K1Q13233 1512 aa23.49■■□□□ 1.35
VPS29-209ENST00000551655 PHLPP1O60346 1717 aa23.45■■□□□ 1.34
VPS29-209ENST00000551655 UPF1Q92900 1129 aaKnown RBP eCLIP23.45■■□□□ 1.34
VPS29-209ENST00000551655 ARHGEF5Q12774 1597 aa23.44■■□□□ 1.34
VPS29-209ENST00000551655 PIK3C2BO00750 1634 aa23.43■■□□□ 1.34
VPS29-209ENST00000551655 EIF2AK4Q9P2K8 1649 aaKnown RBP23.41■■□□□ 1.34
VPS29-209ENST00000551655 RSPH4AQ5TD94 716 aa23.4■■□□□ 1.34
VPS29-209ENST00000551655 TRIM52Q96A61 297 aa23.4■■□□□ 1.34
VPS29-209ENST00000551655 TSPY4P0CV99 314 aa23.39■■□□□ 1.33
VPS29-209ENST00000551655 TSPY10P0CW01 314 aa23.39■■□□□ 1.33
VPS29-209ENST00000551655 EID1Q9Y6B2 187 aa23.39■■□□□ 1.33
VPS29-209ENST00000551655 LRP6O75581 1613 aa23.39■■□□□ 1.33
VPS29-209ENST00000551655 PROSER2Q86WR7 435 aaPredicted RBP23.38■■□□□ 1.33
VPS29-209ENST00000551655 LRRC9Q6ZRR7 1453 aa23.37■■□□□ 1.33
VPS29-209ENST00000551655 SLC26A8Q96RN1 970 aa23.37■■□□□ 1.33
VPS29-209ENST00000551655 JCADQ9P266 1359 aa23.37■■□□□ 1.33
VPS29-209ENST00000551655 TMEM2Q9UHN6 1383 aa23.37■■□□□ 1.33
VPS29-209ENST00000551655 KCNA6P17658 529 aa23.36■■□□□ 1.33
VPS29-209ENST00000551655 MAST1Q9Y2H9 1570 aa23.35■■□□□ 1.33
VPS29-209ENST00000551655 COL16A1Q07092 1604 aaPredicted RBP23.35■■□□□ 1.33
VPS29-209ENST00000551655 PRDM15P57071 1507 aaPredicted RBP23.34■■□□□ 1.33
VPS29-209ENST00000551655 SRCAPQ6ZRS2 3230 aa23.34■■□□□ 1.33
VPS29-209ENST00000551655 TET3O43151 1660 aa23.33■■□□□ 1.33
VPS29-209ENST00000551655 NWD1Q149M9 1564 aa23.31■■□□□ 1.32
VPS29-209ENST00000551655 SLAIN2Q9P270 581 aa23.3■■□□□ 1.32
VPS29-209ENST00000551655 MSH6P52701 1360 aa23.29■■□□□ 1.32
VPS29-209ENST00000551655 EFCAB6Q5THR3 1501 aa23.28■■□□□ 1.32
VPS29-209ENST00000551655 ARHGAP31Q2M1Z3 1444 aa23.28■■□□□ 1.32
VPS29-209ENST00000551655 MEX3CQ5U5Q3 659 aaKnown RBP23.28■■□□□ 1.32
VPS29-209ENST00000551655 STAG3Q9UJ98 1225 aa23.28■■□□□ 1.32
VPS29-209ENST00000551655 NKTRP30414 1462 aaKnown RBP23.28■■□□□ 1.32
VPS29-209ENST00000551655 DUOX2Q9NRD8 1548 aa23.24■■□□□ 1.31
VPS29-209ENST00000551655 ZNF772Q68DY9 489 aaPredicted RBP23.24■■□□□ 1.31
VPS29-209ENST00000551655 KDM5AP29375 1690 aaKnown RBP23.23■■□□□ 1.31
VPS29-209ENST00000551655 IDI1Q13907 227 aa23.22■■□□□ 1.31
VPS29-209ENST00000551655 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.22■■□□□ 1.31
VPS29-209ENST00000551655 SPATA31A6Q5VVP1 1343 aa23.21■■□□□ 1.31
VPS29-209ENST00000551655 SHPRHQ149N8 1683 aa23.2■■□□□ 1.3
VPS29-209ENST00000551655 RXRBP28702 533 aa23.19■■□□□ 1.3
VPS29-209ENST00000551655 FGD6Q6ZV73 1430 aa23.18■■□□□ 1.3
VPS29-209ENST00000551655 BCANQ96GW7 911 aa23.18■■□□□ 1.3
VPS29-209ENST00000551655 CHD2O14647 1828 aaKnown RBP23.17■■□□□ 1.3
VPS29-209ENST00000551655 ADGRB3O60242 1522 aa23.17■■□□□ 1.3
VPS29-209ENST00000551655 AHDC1Q5TGY3 1603 aaPredicted RBP23.15■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms