RNA–Protein interactions for RNA: ENST00000547950.1

SCAF11-211, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 2

Gene SCAF11, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-211ENST00000547950 VPS8Q8N3P4 1428 aa10.56□□□□□ -0.72
SCAF11-211ENST00000547950 ITSN2Q9NZM3 1697 aa10.56□□□□□ -0.72
SCAF11-211ENST00000547950 REREQ9P2R6 1566 aa10.56□□□□□ -0.72
SCAF11-211ENST00000547950 A2MP01023 1474 aa10.55□□□□□ -0.72
SCAF11-211ENST00000547950 NCOA2Q15596 1464 aa10.55□□□□□ -0.72
SCAF11-211ENST00000547950 EHBP1L1Q8N3D4 1523 aa10.55□□□□□ -0.72
SCAF11-211ENST00000547950 UHRF1BP1Q6BDS2 1440 aa10.55□□□□□ -0.72
SCAF11-211ENST00000547950 MBD5Q9P267 1494 aa10.55□□□□□ -0.72
SCAF11-211ENST00000547950 FER1L4A9Z1Z3 1794 aa10.54□□□□□ -0.72
SCAF11-211ENST00000547950 KIF3BO15066 747 aa10.54□□□□□ -0.72
SCAF11-211ENST00000547950 REM2Q8IYK8 340 aaPredicted RBP10.54□□□□□ -0.72
SCAF11-211ENST00000547950 CNTLNQ9NXG0 1405 aa10.54□□□□□ -0.72
SCAF11-211ENST00000547950 KIDINS220Q9ULH0 1771 aa10.54□□□□□ -0.72
SCAF11-211ENST00000547950 ATP7AQ04656 1500 aa10.53□□□□□ -0.72
SCAF11-211ENST00000547950 TIAM1Q13009 1591 aa10.53□□□□□ -0.72
SCAF11-211ENST00000547950 CERKQ8TCT0 537 aa10.53□□□□□ -0.72
SCAF11-211ENST00000547950 DHX29Q7Z478 1369 aaKnown RBP10.52□□□□□ -0.72
SCAF11-211ENST00000547950 LRRC9Q6ZRR7 1453 aa10.52□□□□□ -0.73
SCAF11-211ENST00000547950 RTEL1-TNFRSF6BF6WH68 1400 aa10.51□□□□□ -0.73
SCAF11-211ENST00000547950 WASHC2CQ9Y4E1 1318 aa10.5□□□□□ -0.73
SCAF11-211ENST00000547950 CAMSAP2Q08AD1 1489 aa10.49□□□□□ -0.73
SCAF11-211ENST00000547950 FBXO31Q5XUX0 539 aaPredicted RBP10.49□□□□□ -0.73
SCAF11-211ENST00000547950 NCKAP5LQ9HCH0 1330 aa10.49□□□□□ -0.73
SCAF11-211ENST00000547950 CCDC141Q6ZP82 1450 aa10.49□□□□□ -0.73
SCAF11-211ENST00000547950 INO80Q9ULG1 1556 aaPredicted RBP10.48□□□□□ -0.73
SCAF11-211ENST00000547950 SUPT6HQ7KZ85 1726 aaKnown RBP10.47□□□□□ -0.73
SCAF11-211ENST00000547950 NPATQ14207 1427 aa10.47□□□□□ -0.73
SCAF11-211ENST00000547950 PTPRKQ15262 1439 aa10.46□□□□□ -0.74
SCAF11-211ENST00000547950 C3P01024 1663 aa10.46□□□□□ -0.74
SCAF11-211ENST00000547950 PREX1Q8TCU6 1659 aa10.46□□□□□ -0.74
SCAF11-211ENST00000547950 PLXNC1O60486 1568 aa10.45□□□□□ -0.74
SCAF11-211ENST00000547950 MYOM3Q5VTT5 1437 aa10.45□□□□□ -0.74
SCAF11-211ENST00000547950 MKRN4PQ13434 485 aaPredicted RBP10.45□□□□□ -0.74
SCAF11-211ENST00000547950 RRP7BPQ9NSQ0 103 aa10.45□□□□□ -0.74
SCAF11-211ENST00000547950 MAP3K1Q13233 1512 aa10.44□□□□□ -0.74
SCAF11-211ENST00000547950 PTPRTO14522 1441 aa10.44□□□□□ -0.74
SCAF11-211ENST00000547950 MIA2Q96PC5 1412 aa10.44□□□□□ -0.74
SCAF11-211ENST00000547950 SPDYE2BA6NHP3 402 aa10.44□□□□□ -0.74
SCAF11-211ENST00000547950 SPDYE6P0CI01 402 aa10.44□□□□□ -0.74
SCAF11-211ENST00000547950 SPDYE2Q495Y8 402 aa10.44□□□□□ -0.74
SCAF11-211ENST00000547950 NCOA1Q15788 1441 aa10.43□□□□□ -0.74
SCAF11-211ENST00000547950 PITPNM1O00562 1244 aa10.43□□□□□ -0.74
SCAF11-211ENST00000547950 PKD2Q13563 968 aa10.43□□□□□ -0.74
SCAF11-211ENST00000547950 CHIC2Q9UKJ5 165 aa10.43□□□□□ -0.74
SCAF11-211ENST00000547950 TNRQ92752 1358 aa10.41□□□□□ -0.74
SCAF11-211ENST00000547950 CLTCQ00610 1675 aaKnown RBP10.41□□□□□ -0.74
SCAF11-211ENST00000547950 SETD1BQ9UPS6 1966 aaKnown RBP10.41□□□□□ -0.74
SCAF11-211ENST00000547950 ADGBQ8N7X0 1667 aa10.41□□□□□ -0.74
SCAF11-211ENST00000547950 CAMSAP1Q5T5Y3 1602 aa10.4□□□□□ -0.74
SCAF11-211ENST00000547950 ARHGEF5Q12774 1597 aa10.4□□□□□ -0.74
SCAF11-211ENST00000547950 FAM50AQ14320 339 aaKnown RBP10.4□□□□□ -0.74
SCAF11-211ENST00000547950 THEMISQ8N1K5 641 aaPredicted RBP10.4□□□□□ -0.74
SCAF11-211ENST00000547950 STRCQ7RTU9 1775 aa10.39□□□□□ -0.75
SCAF11-211ENST00000547950 ZNF335Q9H4Z2 1342 aaPredicted RBP10.39□□□□□ -0.75
SCAF11-211ENST00000547950 ANKLE2Q86XL3 938 aa10.39□□□□□ -0.75
SCAF11-211ENST00000547950 ABCC5O15440 1437 aa10.39□□□□□ -0.75
SCAF11-211ENST00000547950 MROH2AA6NES4 1674 aa10.38□□□□□ -0.75
SCAF11-211ENST00000547950 PIP4P2Q8N4L2 257 aa10.38□□□□□ -0.75
SCAF11-211ENST00000547950 ZNF692Q9BU19 519 aaPredicted RBP10.38□□□□□ -0.75
SCAF11-211ENST00000547950 KIF15Q9NS87 1388 aa10.38□□□□□ -0.75
SCAF11-211ENST00000547950 A2ML1A8K2U0 1454 aa10.37□□□□□ -0.75
SCAF11-211ENST00000547950 KDM5DQ9BY66 1539 aa10.37□□□□□ -0.75
SCAF11-211ENST00000547950 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP10.37□□□□□ -0.75
SCAF11-211ENST00000547950 PZPP20742 1482 aa10.36□□□□□ -0.75
SCAF11-211ENST00000547950 FGD6Q6ZV73 1430 aa10.36□□□□□ -0.75
SCAF11-211ENST00000547950 PPARGC1BQ86YN6 1023 aaKnown RBP10.36□□□□□ -0.75
SCAF11-211ENST00000547950 CEP170BQ9Y4F5 1589 aaPredicted RBP10.35□□□□□ -0.75
SCAF11-211ENST00000547950 PLA2R1Q13018 1463 aa10.35□□□□□ -0.75
SCAF11-211ENST00000547950 DAPK1P53355 1430 aa10.34□□□□□ -0.75
SCAF11-211ENST00000547950 UBAP1LF5GYI3 381 aa10.34□□□□□ -0.75
SCAF11-211ENST00000547950 ANKRD30AQ9BXX3 1397 aa10.34□□□□□ -0.75
SCAF11-211ENST00000547950 TCOF1Q13428 1488 aaKnown RBP10.34□□□□□ -0.75
SCAF11-211ENST00000547950 MAST1Q9Y2H9 1570 aa10.34□□□□□ -0.75
SCAF11-211ENST00000547950 MYO3AQ8NEV4 1616 aa10.33□□□□□ -0.76
SCAF11-211ENST00000547950 LTBP4Q8N2S1 1624 aa10.33□□□□□ -0.76
SCAF11-211ENST00000547950 PTPN23Q9H3S7 1636 aa10.33□□□□□ -0.76
SCAF11-211ENST00000547950 ABCC3O15438 1527 aa10.33□□□□□ -0.76
SCAF11-211ENST00000547950 DUOX2Q9NRD8 1548 aa10.33□□□□□ -0.76
SCAF11-211ENST00000547950 NLRP1Q9C000 1473 aa10.32□□□□□ -0.76
SCAF11-211ENST00000547950 KANK1Q14678 1352 aa10.32□□□□□ -0.76
SCAF11-211ENST00000547950 STAG3Q9UJ98 1225 aa10.32□□□□□ -0.76
SCAF11-211ENST00000547950 CLEC11AQ9Y240 323 aa10.32□□□□□ -0.76
SCAF11-211ENST00000547950 ITGAEP38570 1179 aa10.31□□□□□ -0.76
SCAF11-211ENST00000547950 DNMT1P26358 1616 aaKnown RBP10.31□□□□□ -0.76
SCAF11-211ENST00000547950 FAM135AQ9P2D6 1515 aa10.31□□□□□ -0.76
SCAF11-211ENST00000547950 SHANK2Q9UPX8 1470 aa10.3□□□□□ -0.76
SCAF11-211ENST00000547950 TXNDC2Q86VQ3 553 aa10.3□□□□□ -0.76
SCAF11-211ENST00000547950 ERBINQ96RT1 1412 aa10.3□□□□□ -0.76
SCAF11-211ENST00000547950 UGGT1Q9NYU2 1555 aa10.3□□□□□ -0.76
SCAF11-211ENST00000547950 ERVK-7P63135 1459 aa10.3□□□□□ -0.76
SCAF11-211ENST00000547950 LTKP29376 864 aa10.29□□□□□ -0.76
SCAF11-211ENST00000547950 FXR2P51116 673 aaKnown RBP eCLIP10.29□□□□□ -0.76
SCAF11-211ENST00000547950 EID1Q9Y6B2 187 aa10.29□□□□□ -0.76
SCAF11-211ENST00000547950 NPHP4O75161 1426 aaPredicted RBP10.28□□□□□ -0.76
SCAF11-211ENST00000547950 PIP4K2BP78356 416 aa10.28□□□□□ -0.76
SCAF11-211ENST00000547950 IDI1Q13907 227 aa10.28□□□□□ -0.76
SCAF11-211ENST00000547950 SSUH2Q9Y2M2 353 aa10.28□□□□□ -0.76
SCAF11-211ENST00000547950 RNF17Q9BXT8 1623 aaKnown RBP10.28□□□□□ -0.76
SCAF11-211ENST00000547950 ZNF142P52746 1687 aaPredicted RBP10.28□□□□□ -0.76
SCAF11-211ENST00000547950 TOM1O60784 492 aa10.27□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms