RNA–Protein interactions for RNA: ENST00000547950.1

SCAF11-211, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 2

Gene SCAF11, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-211ENST00000547950 AEBP2Q6ZN18 517 aaPredicted RBP19.15■□□□□ 0.66
SCAF11-211ENST00000547950 CHIC1Q5VXU3 224 aa18.21■□□□□ 0.51
SCAF11-211ENST00000547950 NISCHQ9Y2I1 1504 aa16.44■□□□□ 0.22
SCAF11-211ENST00000547950 SENP3Q9H4L4 574 aaPredicted RBP16.33■□□□□ 0.2
SCAF11-211ENST00000547950 PHF23Q9BUL5 403 aaPredicted RBP16.15■□□□□ 0.18
SCAF11-211ENST00000547950 FOXD1Q16676 465 aa15.22■□□□□ 0.03
SCAF11-211ENST00000547950 ABCC9O60706 1549 aa14.7□□□□□ -0.06
SCAF11-211ENST00000547950 PLPPR3Q6T4P5 718 aa14.58□□□□□ -0.08
SCAF11-211ENST00000547950 CCDC180Q9P1Z9 1646 aa14.57□□□□□ -0.08
SCAF11-211ENST00000547950 PPP6R1Q9UPN7 881 aa14.28□□□□□ -0.12
SCAF11-211ENST00000547950 ADRA2BP18089 450 aa14.27□□□□□ -0.13
SCAF11-211ENST00000547950 PIAS4Q8N2W9 510 aaPredicted RBP14.27□□□□□ -0.13
SCAF11-211ENST00000547950 MSH5O43196 834 aa14.22□□□□□ -0.13
SCAF11-211ENST00000547950 DCAF8L2P0C7V8 631 aa14.08□□□□□ -0.16
SCAF11-211ENST00000547950 POTEDQ86YR6 584 aa14.01□□□□□ -0.17
SCAF11-211ENST00000547950 RB1CC1Q8TDY2 1594 aa13.93□□□□□ -0.18
SCAF11-211ENST00000547950 NACADO15069 1562 aa13.86□□□□□ -0.19
SCAF11-211ENST00000547950 PABPN1Q86U42 306 aaKnown RBP eCLIP13.8□□□□□ -0.2
SCAF11-211ENST00000547950 DNAJC5BQ9UF47 199 aa13.79□□□□□ -0.2
SCAF11-211ENST00000547950 MYO15BQ96JP2 1530 aa13.66□□□□□ -0.22
SCAF11-211ENST00000547950 ZCCHC6Q5VYS8 1495 aaKnown RBP13.61□□□□□ -0.23
SCAF11-211ENST00000547950 DCAF1Q9Y4B6 1507 aa13.52□□□□□ -0.25
SCAF11-211ENST00000547950 BICRAQ9NZM4 1560 aa13.51□□□□□ -0.25
SCAF11-211ENST00000547950 UNC13AQ9UPW8 1703 aa13.47□□□□□ -0.25
SCAF11-211ENST00000547950 SCRIBQ14160 1630 aa13.4□□□□□ -0.26
SCAF11-211ENST00000547950 SHROOM4Q9ULL8 1493 aa13.29□□□□□ -0.28
SCAF11-211ENST00000547950 CECR2Q9BXF3 1484 aa13.22□□□□□ -0.29
SCAF11-211ENST00000547950 CC2D2AQ9P2K1 1620 aa13.2□□□□□ -0.3
SCAF11-211ENST00000547950 EIF4G1Q04637 1599 aaKnown RBP13.19□□□□□ -0.3
SCAF11-211ENST00000547950 MAPK8IP2Q13387 824 aaPredicted RBP13.1□□□□□ -0.31
SCAF11-211ENST00000547950 SCAF1Q9H7N4 1312 aaKnown RBP13.02□□□□□ -0.33
SCAF11-211ENST00000547950 DMRT2Q9Y5R5 561 aa12.94□□□□□ -0.34
SCAF11-211ENST00000547950 NCAPD3P42695 1498 aa12.85□□□□□ -0.35
SCAF11-211ENST00000547950 ATAD2BQ9ULI0 1458 aa12.82□□□□□ -0.36
SCAF11-211ENST00000547950 PPP4R3CPQ6ZMV5 832 aa12.81□□□□□ -0.36
SCAF11-211ENST00000547950 SMARCA4P51532 1647 aa12.75□□□□□ -0.37
SCAF11-211ENST00000547950 SMARCA2P51531 1590 aa12.74□□□□□ -0.37
SCAF11-211ENST00000547950 BAZ1AQ9NRL2 1556 aaPredicted RBP12.73□□□□□ -0.37
SCAF11-211ENST00000547950 BAZ1BQ9UIG0 1483 aaKnown RBP12.7□□□□□ -0.38
SCAF11-211ENST00000547950 MROH2BQ7Z745 1585 aa12.69□□□□□ -0.38
SCAF11-211ENST00000547950 ERCC6Q03468 1493 aa12.68□□□□□ -0.38
SCAF11-211ENST00000547950 HMGXB3Q12766 1538 aa12.67□□□□□ -0.38
SCAF11-211ENST00000547950 NESP48681 1621 aa12.63□□□□□ -0.39
SCAF11-211ENST00000547950 PEG3Q9GZU2 1588 aa12.6□□□□□ -0.39
SCAF11-211ENST00000547950 DNAJC5Q9H3Z4 198 aa12.59□□□□□ -0.39
SCAF11-211ENST00000547950 CUX2O14529 1486 aa12.56□□□□□ -0.4
SCAF11-211ENST00000547950 DCAF8L1A6NGE4 600 aa12.54□□□□□ -0.4
SCAF11-211ENST00000547950 CNKSR2Q8WXI2 1034 aa12.54□□□□□ -0.4
SCAF11-211ENST00000547950 CADPSQ9ULU8 1353 aa12.5□□□□□ -0.41
SCAF11-211ENST00000547950 PDS5BQ9NTI5 1447 aa12.5□□□□□ -0.41
SCAF11-211ENST00000547950 WIZO95785 1651 aa12.49□□□□□ -0.41
SCAF11-211ENST00000547950 RSF1Q96T23 1441 aaPredicted RBP12.49□□□□□ -0.41
SCAF11-211ENST00000547950 LAMC3Q9Y6N6 1575 aa12.47□□□□□ -0.41
SCAF11-211ENST00000547950 HOXD11P31277 338 aaPredicted RBP12.46□□□□□ -0.41
SCAF11-211ENST00000547950 RNF216Q9NWF9 866 aaPredicted RBP12.39□□□□□ -0.43
SCAF11-211ENST00000547950 THOC2Q8NI27 1593 aaKnown RBP12.37□□□□□ -0.43
SCAF11-211ENST00000547950 MRC2Q9UBG0 1479 aa12.34□□□□□ -0.43
SCAF11-211ENST00000547950 KIF21AQ7Z4S6 1674 aa12.34□□□□□ -0.43
SCAF11-211ENST00000547950 TOP2AP11388 1531 aaKnown RBP12.33□□□□□ -0.44
SCAF11-211ENST00000547950 NCBP3Q53F19 620 aaKnown RBP12.33□□□□□ -0.44
SCAF11-211ENST00000547950 CFTRP13569 1480 aa12.33□□□□□ -0.44
SCAF11-211ENST00000547950 FANCD2Q9BXW9 1451 aa12.33□□□□□ -0.44
SCAF11-211ENST00000547950 CEP164Q9UPV0 1460 aa12.31□□□□□ -0.44
SCAF11-211ENST00000547950 CCDC88BA6NC98 1476 aa12.27□□□□□ -0.44
SCAF11-211ENST00000547950 WDR62O43379 1518 aa12.27□□□□□ -0.45
SCAF11-211ENST00000547950 CACNB1Q02641 598 aaPredicted RBP12.24□□□□□ -0.45
SCAF11-211ENST00000547950 URB2Q14146 1524 aaKnown RBP12.2□□□□□ -0.46
SCAF11-211ENST00000547950 SUPT5HO00267 1087 aaKnown RBP12.14□□□□□ -0.47
SCAF11-211ENST00000547950 NPM3O75607 178 aaKnown RBP12.14□□□□□ -0.47
SCAF11-211ENST00000547950 OSCARQ8IYS5 282 aa12.14□□□□□ -0.47
SCAF11-211ENST00000547950 TRIM41Q8WV44 630 aa12.13□□□□□ -0.47
SCAF11-211ENST00000547950 RNF39Q9H2S5 420 aa12.12□□□□□ -0.47
SCAF11-211ENST00000547950 TOPBP1Q92547 1522 aa12.08□□□□□ -0.48
SCAF11-211ENST00000547950 IFT140Q96RY7 1462 aa12.07□□□□□ -0.48
SCAF11-211ENST00000547950 ZNF608Q9ULD9 1512 aaPredicted RBP12.06□□□□□ -0.48
SCAF11-211ENST00000547950 ABCC8Q09428 1581 aa12.05□□□□□ -0.48
SCAF11-211ENST00000547950 AQRO60306 1485 aaKnown RBP eCLIP12.01□□□□□ -0.49
SCAF11-211ENST00000547950 FBLN2P98095 1184 aa12□□□□□ -0.49
SCAF11-211ENST00000547950 DNMBPQ6XZF7 1577 aa12□□□□□ -0.49
SCAF11-211ENST00000547950 PRDM2Q13029 1718 aa11.99□□□□□ -0.49
SCAF11-211ENST00000547950 SOGA1O94964 1423 aa11.98□□□□□ -0.49
SCAF11-211ENST00000547950 TDRD9Q8NDG6 1382 aaKnown RBP11.98□□□□□ -0.49
SCAF11-211ENST00000547950 RAD54L2Q9Y4B4 1467 aa11.97□□□□□ -0.49
SCAF11-211ENST00000547950 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.97□□□□□ -0.49
SCAF11-211ENST00000547950 POLA1P09884 1462 aaPredicted RBP11.96□□□□□ -0.49
SCAF11-211ENST00000547950 KCNA4P22459 653 aa11.96□□□□□ -0.49
SCAF11-211ENST00000547950 C1QBPQ07021 282 aaKnown RBP11.95□□□□□ -0.5
SCAF11-211ENST00000547950 FGD5Q6ZNL6 1462 aa11.91□□□□□ -0.5
SCAF11-211ENST00000547950 TARBP1Q13395 1621 aaKnown RBP11.91□□□□□ -0.5
SCAF11-211ENST00000547950 EIF4G3O43432 1585 aaKnown RBP11.9□□□□□ -0.5
SCAF11-211ENST00000547950 CUX1P39880 1505 aa11.9□□□□□ -0.5
SCAF11-211ENST00000547950 CYB5RLQ6IPT4 315 aa11.89□□□□□ -0.51
SCAF11-211ENST00000547950 CHMP7Q8WUX9 453 aaPredicted RBP11.89□□□□□ -0.51
SCAF11-211ENST00000547950 SNAPC4Q5SXM2 1469 aa11.83□□□□□ -0.52
SCAF11-211ENST00000547950 ARHGEF11O15085 1522 aa11.83□□□□□ -0.52
SCAF11-211ENST00000547950 GRIN2BQ13224 1484 aa11.82□□□□□ -0.52
SCAF11-211ENST00000547950 RIMBP3CA6NJZ7 1639 aa11.81□□□□□ -0.52
SCAF11-211ENST00000547950 RIMBP3BA6NNM3 1639 aa11.81□□□□□ -0.52
SCAF11-211ENST00000547950 RIMBP3Q9UFD9 1639 aa11.81□□□□□ -0.52
SCAF11-211ENST00000547950 GAPVD1Q14C86 1478 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 118.9 ms