RNA–Protein interactions for RNA: ENST00000542717.1

CHD4-209, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 3

Gene CHD4, Length 204 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-209ENST00000542717 NGLY1Q96IV0 654 aa5.73□□□□□ -1.49
CHD4-209ENST00000542717 EHMT2Q96KQ7 1210 aa5.73□□□□□ -1.49
CHD4-209ENST00000542717 LRP6O75581 1613 aa5.73□□□□□ -1.49
CHD4-209ENST00000542717 ABCC1P33527 1531 aa5.73□□□□□ -1.49
CHD4-209ENST00000542717 ARHGAP5Q13017 1502 aa5.73□□□□□ -1.49
CHD4-209ENST00000542717 STRCP1A6NGW2 1772 aa5.72□□□□□ -1.49
CHD4-209ENST00000542717 TNRQ92752 1358 aa5.72□□□□□ -1.49
CHD4-209ENST00000542717 PHLPP1O60346 1717 aa5.72□□□□□ -1.49
CHD4-209ENST00000542717 DCAF8L1A6NGE4 600 aa5.72□□□□□ -1.49
CHD4-209ENST00000542717 CHIC1Q5VXU3 224 aa5.72□□□□□ -1.49
CHD4-209ENST00000542717 CCDC125Q86Z20 511 aa5.72□□□□□ -1.49
CHD4-209ENST00000542717 FAM135AQ9P2D6 1515 aa5.72□□□□□ -1.49
CHD4-209ENST00000542717 IQGAP1P46940 1657 aa5.72□□□□□ -1.49
CHD4-209ENST00000542717 FBXO31Q5XUX0 539 aaPredicted RBP5.71□□□□□ -1.5
CHD4-209ENST00000542717 ATP1B4Q9UN42 357 aaPredicted RBP5.71□□□□□ -1.5
CHD4-209ENST00000542717 ITSN2Q9NZM3 1697 aa5.71□□□□□ -1.5
CHD4-209ENST00000542717 MYO5CQ9NQX4 1742 aa5.71□□□□□ -1.5
CHD4-209ENST00000542717 MED14O60244 1454 aa5.71□□□□□ -1.5
CHD4-209ENST00000542717 PSDA5PKW4 1024 aaPredicted RBP5.7□□□□□ -1.5
CHD4-209ENST00000542717 PROSER2Q86WR7 435 aaPredicted RBP5.7□□□□□ -1.5
CHD4-209ENST00000542717 C8orf37Q96NL8 207 aa5.7□□□□□ -1.5
CHD4-209ENST00000542717 LRRC9Q6ZRR7 1453 aa5.7□□□□□ -1.5
CHD4-209ENST00000542717 LRP5O75197 1615 aa5.7□□□□□ -1.5
CHD4-209ENST00000542717 TMEM94Q12767 1356 aa5.69□□□□□ -1.5
CHD4-209ENST00000542717 SF3B2Q13435 895 aaKnown RBP5.69□□□□□ -1.5
CHD4-209ENST00000542717 SLAIN2Q9P270 581 aa5.69□□□□□ -1.5
CHD4-209ENST00000542717 DEPDC5O75140 1603 aa5.69□□□□□ -1.5
CHD4-209ENST00000542717 KDM5DQ9BY66 1539 aa5.69□□□□□ -1.5
CHD4-209ENST00000542717 UGGT1Q9NYU2 1555 aa5.68□□□□□ -1.5
CHD4-209ENST00000542717 FGD6Q6ZV73 1430 aa5.68□□□□□ -1.5
CHD4-209ENST00000542717 CDK11AQ9UQ88 783 aaPredicted RBP5.68□□□□□ -1.5
CHD4-209ENST00000542717 MSH6P52701 1360 aa5.67□□□□□ -1.5
CHD4-209ENST00000542717 HRCP23327 699 aa5.67□□□□□ -1.5
CHD4-209ENST00000542717 C1QTNF8P60827 252 aa5.67□□□□□ -1.5
CHD4-209ENST00000542717 DEFB132Q7Z7B7 95 aa5.67□□□□□ -1.5
CHD4-209ENST00000542717 SPAG9O60271 1321 aaKnown RBP5.67□□□□□ -1.5
CHD4-209ENST00000542717 KIDINS220Q9ULH0 1771 aa5.67□□□□□ -1.5
CHD4-209ENST00000542717 XIRP1Q702N8 1843 aaKnown RBP5.67□□□□□ -1.5
CHD4-209ENST00000542717 ZNF777Q9ULD5 760 aaPredicted RBP5.66□□□□□ -1.5
CHD4-209ENST00000542717 NLRP1Q9C000 1473 aa5.65□□□□□ -1.5
CHD4-209ENST00000542717 C14orf37Q86TY3 774 aa5.65□□□□□ -1.5
CHD4-209ENST00000542717 TXNDC2Q86VQ3 553 aa5.65□□□□□ -1.5
CHD4-209ENST00000542717 COL16A1Q07092 1604 aaPredicted RBP5.65□□□□□ -1.51
CHD4-209ENST00000542717 MIA2Q96PC5 1412 aa5.65□□□□□ -1.51
CHD4-209ENST00000542717 ZNF784Q8NCA9 323 aaPredicted RBP5.64□□□□□ -1.51
CHD4-209ENST00000542717 GRWD1Q9BQ67 446 aaKnown RBP eCLIP5.64□□□□□ -1.518e-13■■■■□ 24.5
CHD4-209ENST00000542717 EID1Q9Y6B2 187 aa5.64□□□□□ -1.51
CHD4-209ENST00000542717 A2MP01023 1474 aa5.64□□□□□ -1.51
CHD4-209ENST00000542717 ATP7AQ04656 1500 aa5.64□□□□□ -1.51
CHD4-209ENST00000542717 NWD1Q149M9 1564 aa5.63□□□□□ -1.51
CHD4-209ENST00000542717 SAMD9Q5K651 1589 aa5.63□□□□□ -1.51
CHD4-209ENST00000542717 ADAMTS2O95450 1211 aa5.63□□□□□ -1.51
CHD4-209ENST00000542717 KCNA6P17658 529 aa5.63□□□□□ -1.51
CHD4-209ENST00000542717 USP21Q9UK80 565 aa5.63□□□□□ -1.51
CHD4-209ENST00000542717 TRPC5Q9UL62 973 aaPredicted RBP5.63□□□□□ -1.51
CHD4-209ENST00000542717 WASHC2CQ9Y4E1 1318 aa5.63□□□□□ -1.51
CHD4-209ENST00000542717 BLMP54132 1417 aaPredicted RBP5.63□□□□□ -1.51
CHD4-209ENST00000542717 SCAF11Q99590 1463 aaKnown RBP5.63□□□□□ -1.51
CHD4-209ENST00000542717 KIF14Q15058 1648 aa5.63□□□□□ -1.51
CHD4-209ENST00000542717 NHSL1Q5SYE7 1610 aa5.63□□□□□ -1.51
CHD4-209ENST00000542717 CAPN15O75808 1086 aa5.62□□□□□ -1.51
CHD4-209ENST00000542717 BCANQ96GW7 911 aa5.62□□□□□ -1.51
CHD4-209ENST00000542717 PPP1R1BQ9UD71 204 aaPredicted RBP5.62□□□□□ -1.51
CHD4-209ENST00000542717 CLIP1P30622 1438 aa5.62□□□□□ -1.51
CHD4-209ENST00000542717 PZPP20742 1482 aa5.62□□□□□ -1.51
CHD4-209ENST00000542717 SHPRHQ149N8 1683 aa5.62□□□□□ -1.51
CHD4-209ENST00000542717 ZC3H13Q5T200 1668 aaKnown RBP5.62□□□□□ -1.51
CHD4-209ENST00000542717 KIF3BO15066 747 aa5.61□□□□□ -1.51
CHD4-209ENST00000542717 LTKP29376 864 aa5.61□□□□□ -1.51
CHD4-209ENST00000542717 HNRNPMP52272 730 aaKnown RBP eCLIP5.61□□□□□ -1.51
CHD4-209ENST00000542717 MAP3K1Q13233 1512 aa5.61□□□□□ -1.51
CHD4-209ENST00000542717 R3HDM1Q15032 1099 aaKnown RBP5.61□□□□□ -1.51
CHD4-209ENST00000542717 SAMD9LQ8IVG5 1584 aa5.6□□□□□ -1.51
CHD4-209ENST00000542717 ATF3P18847 181 aa5.6□□□□□ -1.51
CHD4-209ENST00000542717 BAG6P46379 1132 aa5.6□□□□□ -1.51
CHD4-209ENST00000542717 SLC26A8Q96RN1 970 aa5.6□□□□□ -1.51
CHD4-209ENST00000542717 STAG3Q9UJ98 1225 aa5.6□□□□□ -1.51
CHD4-209ENST00000542717 LRRC59Q96AG4 307 aaKnown RBP5.59□□□□□ -1.51
CHD4-209ENST00000542717 CDC42BPBQ9Y5S2 1711 aa5.59□□□□□ -1.51
CHD4-209ENST00000542717 PLXNC1O60486 1568 aa5.59□□□□□ -1.52
CHD4-209ENST00000542717 PRDM15P57071 1507 aaPredicted RBP5.58□□□□□ -1.52
CHD4-209ENST00000542717 TROQ12816 1431 aaPredicted RBP5.58□□□□□ -1.52
CHD4-209ENST00000542717 CADPS2Q86UW7 1296 aa5.58□□□□□ -1.52
CHD4-209ENST00000542717 EP400Q96L91 3159 aa5.58□□□□□ -1.52
CHD4-209ENST00000542717 TIAM1Q13009 1591 aa5.58□□□□□ -1.52
CHD4-209ENST00000542717 ABCC3O15438 1527 aa5.58□□□□□ -1.52
CHD4-209ENST00000542717 PRXQ9BXM0 1461 aa5.58□□□□□ -1.52
CHD4-209ENST00000542717 AHDC1Q5TGY3 1603 aaPredicted RBP5.57□□□□□ -1.52
CHD4-209ENST00000542717 GIGYF1O75420 1035 aaPredicted RBP5.57□□□□□ -1.52
CHD4-209ENST00000542717 SLC34A2O95436 690 aa5.57□□□□□ -1.52
CHD4-209ENST00000542717 SYCP2Q9BX26 1530 aa5.57□□□□□ -1.52
CHD4-209ENST00000542717 NKTRP30414 1462 aaKnown RBP5.56□□□□□ -1.52
CHD4-209ENST00000542717 NCOA2Q15596 1464 aa5.56□□□□□ -1.52
CHD4-209ENST00000542717 BCL9LQ86UU0 1499 aa5.56□□□□□ -1.52
CHD4-209ENST00000542717 PREX2Q70Z35 1606 aa5.56□□□□□ -1.52
CHD4-209ENST00000542717 EN1Q05925 392 aaPredicted RBP5.55□□□□□ -1.52
CHD4-209ENST00000542717 BRINP3Q76B58 766 aa5.55□□□□□ -1.52
CHD4-209ENST00000542717 GJD4Q96KN9 370 aaPredicted RBP5.55□□□□□ -1.52
CHD4-209ENST00000542717 PCDH10Q9P2E7 1040 aa5.55□□□□□ -1.52
CHD4-209ENST00000542717 KDM5AP29375 1690 aaKnown RBP5.55□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms