RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 TRPM1Q7Z4N2 1603 aa13.75□□□□□ -0.21
SS18-205ENST00000542420 NEURL4Q96JN8 1562 aa13.75□□□□□ -0.21
SS18-205ENST00000542420 CFAP74Q9C0B2 1584 aa13.75□□□□□ -0.21
SS18-205ENST00000542420 ZFYVE16Q7Z3T8 1539 aa13.74□□□□□ -0.21
SS18-205ENST00000542420 ROCK2O75116 1388 aaKnown RBP13.74□□□□□ -0.21
SS18-205ENST00000542420 BCORL1Q5H9F3 1711 aa13.72□□□□□ -0.21
SS18-205ENST00000542420 HIRIP3Q9BW71 556 aaPredicted RBP13.72□□□□□ -0.21
SS18-205ENST00000542420 CCDC144AA2RUR9 1427 aa13.71□□□□□ -0.21
SS18-205ENST00000542420 TET3O43151 1660 aa13.71□□□□□ -0.21
SS18-205ENST00000542420 E9PCH4 1651 aa13.7□□□□□ -0.22
SS18-205ENST00000542420 USP47Q96K76 1375 aa13.7□□□□□ -0.22
SS18-205ENST00000542420 CEP152O94986 1710 aa13.7□□□□□ -0.22
SS18-205ENST00000542420 VWDEQ8N2E2 1590 aa13.7□□□□□ -0.22
SS18-205ENST00000542420 SPHKAPQ2M3C7 1700 aa13.68□□□□□ -0.22
SS18-205ENST00000542420 GPRASP1Q5JY77 1395 aa13.68□□□□□ -0.22
SS18-205ENST00000542420 RNF17Q9BXT8 1623 aaKnown RBP13.68□□□□□ -0.22
SS18-205ENST00000542420 ATP7AQ04656 1500 aa13.68□□□□□ -0.22
SS18-205ENST00000542420 KIF7Q2M1P5 1343 aa13.67□□□□□ -0.22
SS18-205ENST00000542420 TRPM2O94759 1503 aa13.67□□□□□ -0.22
SS18-205ENST00000542420 STAC3Q96MF2 364 aa13.67□□□□□ -0.22
SS18-205ENST00000542420 PLA2R1Q13018 1463 aa13.67□□□□□ -0.22
SS18-205ENST00000542420 PRAG1Q86YV5 1406 aa13.67□□□□□ -0.22
SS18-205ENST00000542420 TRAPPC8Q9Y2L5 1435 aa13.66□□□□□ -0.22
SS18-205ENST00000542420 KTN1Q86UP2 1357 aaKnown RBP13.66□□□□□ -0.22
SS18-205ENST00000542420 PRDM15P57071 1507 aaPredicted RBP13.66□□□□□ -0.22
SS18-205ENST00000542420 KCNH8Q96L42 1107 aa13.65□□□□□ -0.22
SS18-205ENST00000542420 FANCAO15360 1455 aa13.65□□□□□ -0.22
SS18-205ENST00000542420 KIAA1210Q9ULL0 1709 aa13.65□□□□□ -0.22
SS18-205ENST00000542420 A2MP01023 1474 aa13.63□□□□□ -0.23
SS18-205ENST00000542420 PRKRIP1Q9H875 184 aaPredicted RBP13.63□□□□□ -0.23
SS18-205ENST00000542420 PTPRTO14522 1441 aa13.63□□□□□ -0.23
SS18-205ENST00000542420 C11orf95C9JLR9 678 aaPredicted RBP13.62□□□□□ -0.23
SS18-205ENST00000542420 SPAG9O60271 1321 aaKnown RBP13.62□□□□□ -0.23
SS18-205ENST00000542420 ASXL2Q76L83 1435 aa13.62□□□□□ -0.23
SS18-205ENST00000542420 LMTK2Q8IWU2 1503 aa13.61□□□□□ -0.23
SS18-205ENST00000542420 SUPT16HQ9Y5B9 1047 aaKnown RBP13.61□□□□□ -0.23
SS18-205ENST00000542420 ADGRL1O94910 1474 aa13.61□□□□□ -0.23
SS18-205ENST00000542420 DHX29Q7Z478 1369 aaKnown RBP13.61□□□□□ -0.23
SS18-205ENST00000542420 KIDINS220Q9ULH0 1771 aa13.6□□□□□ -0.23
SS18-205ENST00000542420 MROH1Q8NDA8 1641 aa13.59□□□□□ -0.23
SS18-205ENST00000542420 MADDQ8WXG6 1647 aa13.59□□□□□ -0.23
SS18-205ENST00000542420 ANP32EQ9BTT0 268 aa13.59□□□□□ -0.23
SS18-205ENST00000542420 IQGAP1P46940 1657 aa13.59□□□□□ -0.23
SS18-205ENST00000542420 ZNF518AQ6AHZ1 1483 aa13.59□□□□□ -0.23
SS18-205ENST00000542420 PRKCSHP14314 528 aaPredicted RBP13.58□□□□□ -0.23
SS18-205ENST00000542420 CARD11Q9BXL7 1154 aa13.58□□□□□ -0.23
SS18-205ENST00000542420 KANK1Q14678 1352 aa13.58□□□□□ -0.24
SS18-205ENST00000542420 KIF1BO60333 1816 aa13.57□□□□□ -0.24
SS18-205ENST00000542420 CLTCL1P53675 1640 aa13.56□□□□□ -0.24
SS18-205ENST00000542420 DCAF11Q8TEB1 546 aa13.56□□□□□ -0.24
SS18-205ENST00000542420 IFT172Q9UG01 1749 aa13.56□□□□□ -0.24
SS18-205ENST00000542420 COL17A1Q9UMD9 1497 aaPredicted RBP13.56□□□□□ -0.24
SS18-205ENST00000542420 OSCARQ8IYS5 282 aa13.56□□□□□ -0.24
SS18-205ENST00000542420 EFCAB6Q5THR3 1501 aa13.55□□□□□ -0.24
SS18-205ENST00000542420 MLH3Q9UHC1 1453 aa13.55□□□□□ -0.24
SS18-205ENST00000542420 SCAPERQ9BY12 1400 aa13.55□□□□□ -0.24
SS18-205ENST00000542420 HECW2Q9P2P5 1572 aa13.54□□□□□ -0.24
SS18-205ENST00000542420 NEO1Q92859 1461 aa13.54□□□□□ -0.24
SS18-205ENST00000542420 WASHC2CQ9Y4E1 1318 aa13.53□□□□□ -0.24
SS18-205ENST00000542420 ZMYM4Q5VZL5 1548 aa13.53□□□□□ -0.24
SS18-205ENST00000542420 MYOM2P54296 1465 aa13.53□□□□□ -0.24
SS18-205ENST00000542420 ERICH6BQ5W0A0 696 aa13.53□□□□□ -0.24
SS18-205ENST00000542420 NEFLP07196 543 aa13.52□□□□□ -0.24
SS18-205ENST00000542420 ZBED9Q6R2W3 1325 aa13.52□□□□□ -0.25
SS18-205ENST00000542420 POGZQ7Z3K3 1410 aa13.51□□□□□ -0.25
SS18-205ENST00000542420 INSRP06213 1382 aa13.51□□□□□ -0.25
SS18-205ENST00000542420 ZNF326Q5BKZ1 582 aaKnown RBP13.51□□□□□ -0.25
SS18-205ENST00000542420 NPM1P06748 294 aaKnown RBP eCLIP13.5□□□□□ -0.25
SS18-205ENST00000542420 RALBP1Q15311 655 aa13.5□□□□□ -0.25
SS18-205ENST00000542420 GLI2P10070 1586 aa13.5□□□□□ -0.25
SS18-205ENST00000542420 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.5□□□□□ -0.252e-7■■■□□ 19
SS18-205ENST00000542420 ZC3H13Q5T200 1668 aaKnown RBP13.5□□□□□ -0.25
SS18-205ENST00000542420 PPRC1Q5VV67 1664 aaKnown RBP13.49□□□□□ -0.25
SS18-205ENST00000542420 BRD4O60885 1362 aaPredicted RBP13.49□□□□□ -0.25
SS18-205ENST00000542420 MAP3K4Q9Y6R4 1608 aa13.49□□□□□ -0.25
SS18-205ENST00000542420 ST20-MTHFSA0A0A6YYL1 179 aa13.48□□□□□ -0.25
SS18-205ENST00000542420 HNRNPUQ00839 825 aaKnown RBP eCLIP13.48□□□□□ -0.25
SS18-205ENST00000542420 MRS2Q9HD23 443 aa13.48□□□□□ -0.25
SS18-205ENST00000542420 SLC24A1O60721 1099 aa13.48□□□□□ -0.25
SS18-205ENST00000542420 AFAP1Q8N556 730 aa13.48□□□□□ -0.25
SS18-205ENST00000542420 CD109Q6YHK3 1445 aa13.48□□□□□ -0.25
SS18-205ENST00000542420 KDM2AQ9Y2K7 1162 aa13.47□□□□□ -0.25
SS18-205ENST00000542420 MYO3AQ8NEV4 1616 aa13.47□□□□□ -0.25
SS18-205ENST00000542420 SYNMO15061 1565 aa13.46□□□□□ -0.25
SS18-205ENST00000542420 SCAF11Q99590 1463 aaKnown RBP13.46□□□□□ -0.25
SS18-205ENST00000542420 NRXN1Q9ULB1 1477 aa13.46□□□□□ -0.26
SS18-205ENST00000542420 FRMPD1Q5SYB0 1578 aa13.46□□□□□ -0.26
SS18-205ENST00000542420 SETBP1Q9Y6X0 1596 aa13.46□□□□□ -0.26
SS18-205ENST00000542420 RICTORQ6R327 1708 aa13.45□□□□□ -0.26
SS18-205ENST00000542420 ADGRB3O60242 1522 aa13.45□□□□□ -0.26
SS18-205ENST00000542420 ABCA6Q8N139 1617 aa13.45□□□□□ -0.26
SS18-205ENST00000542420 MYBBP1AQ9BQG0 1328 aaKnown RBP13.45□□□□□ -0.26
SS18-205ENST00000542420 LRPPRCP42704 1394 aaKnown RBP13.44□□□□□ -0.26
SS18-205ENST00000542420 PARD3Q8TEW0 1356 aa13.44□□□□□ -0.26
SS18-205ENST00000542420 EIF3AQ14152 1382 aaKnown RBP13.43□□□□□ -0.26
SS18-205ENST00000542420 PPLO60437 1756 aa13.43□□□□□ -0.26
SS18-205ENST00000542420 TESK2Q96S53 571 aa13.43□□□□□ -0.26
SS18-205ENST00000542420 MROH2AA6NES4 1674 aa13.42□□□□□ -0.26
SS18-205ENST00000542420 CAMSAP1Q5T5Y3 1602 aa13.42□□□□□ -0.26
SS18-205ENST00000542420 TMF1P82094 1093 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms