RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 PLEKHH2Q8IVE3 1493 aa20.29■□□□□ 0.84
CLSTN3-208ENST00000538933 STRCP1A6NGW2 1772 aa20.29■□□□□ 0.84
CLSTN3-208ENST00000538933 RGS17Q9UGC6 210 aaPredicted RBP20.28■□□□□ 0.84
CLSTN3-208ENST00000538933 MED14O60244 1454 aa20.27■□□□□ 0.84
CLSTN3-208ENST00000538933 TNRQ92752 1358 aa20.27■□□□□ 0.84
CLSTN3-208ENST00000538933 ANKLE2Q86XL3 938 aa20.26■□□□□ 0.83
CLSTN3-208ENST00000538933 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.25■□□□□ 0.83
CLSTN3-208ENST00000538933 DEPDC5O75140 1603 aa20.25■□□□□ 0.83
CLSTN3-208ENST00000538933 CFDP1Q9UEE9 299 aaPredicted RBP20.25■□□□□ 0.83
CLSTN3-208ENST00000538933 FYCO1Q9BQS8 1478 aa20.24■□□□□ 0.83
CLSTN3-208ENST00000538933 PZPP20742 1482 aa20.24■□□□□ 0.83
CLSTN3-208ENST00000538933 DHX29Q7Z478 1369 aaKnown RBP20.22■□□□□ 0.83
CLSTN3-208ENST00000538933 NPHP4O75161 1426 aaPredicted RBP20.22■□□□□ 0.83
CLSTN3-208ENST00000538933 MBD5Q9P267 1494 aa20.22■□□□□ 0.83
CLSTN3-208ENST00000538933 LRRC7Q96NW7 1537 aa20.22■□□□□ 0.83
CLSTN3-208ENST00000538933 THEMISQ8N1K5 641 aaPredicted RBP20.21■□□□□ 0.83
CLSTN3-208ENST00000538933 ZNF644Q9H582 1327 aaPredicted RBP20.21■□□□□ 0.83
CLSTN3-208ENST00000538933 IQGAP1P46940 1657 aa20.19■□□□□ 0.82
CLSTN3-208ENST00000538933 RTEL1-TNFRSF6BF6WH68 1400 aa20.19■□□□□ 0.82
CLSTN3-208ENST00000538933 MIA2Q96PC5 1412 aa20.19■□□□□ 0.82
CLSTN3-208ENST00000538933 CCNB3Q8WWL7 1395 aa20.19■□□□□ 0.82
CLSTN3-208ENST00000538933 NLRP1Q9C000 1473 aa20.18■□□□□ 0.82
CLSTN3-208ENST00000538933 UGGT1Q9NYU2 1555 aa20.17■□□□□ 0.82
CLSTN3-208ENST00000538933 SENP3Q9H4L4 574 aaPredicted RBP20.17■□□□□ 0.82
CLSTN3-208ENST00000538933 KDM5DQ9BY66 1539 aa20.17■□□□□ 0.82
CLSTN3-208ENST00000538933 FAM135AQ9P2D6 1515 aa20.17■□□□□ 0.82
CLSTN3-208ENST00000538933 RNF17Q9BXT8 1623 aaKnown RBP20.16■□□□□ 0.82
CLSTN3-208ENST00000538933 KIF3BO15066 747 aa20.15■□□□□ 0.82
CLSTN3-208ENST00000538933 SYNMO15061 1565 aa20.14■□□□□ 0.81
CLSTN3-208ENST00000538933 ZC3H13Q5T200 1668 aaKnown RBP20.13■□□□□ 0.81
CLSTN3-208ENST00000538933 WASHC2CQ9Y4E1 1318 aa20.12■□□□□ 0.81
CLSTN3-208ENST00000538933 XIRP1Q702N8 1843 aaKnown RBP20.12■□□□□ 0.81
CLSTN3-208ENST00000538933 TIAM1Q13009 1591 aa20.12■□□□□ 0.81
CLSTN3-208ENST00000538933 POTEAQ6S8J7 498 aa20.09■□□□□ 0.81
CLSTN3-208ENST00000538933 MTUS2Q5JR59 1369 aa20.05■□□□□ 0.8
CLSTN3-208ENST00000538933 UBR1Q8IWV7 1749 aa20.02■□□□□ 0.8
CLSTN3-208ENST00000538933 CCDC141Q6ZP82 1450 aa20.02■□□□□ 0.8
CLSTN3-208ENST00000538933 FAM135BQ49AJ0 1406 aa20.02■□□□□ 0.79
CLSTN3-208ENST00000538933 CFAP65Q6ZU64 1925 aaKnown RBP20■□□□□ 0.79
CLSTN3-208ENST00000538933 ABCC3O15438 1527 aa19.99■□□□□ 0.79
CLSTN3-208ENST00000538933 LTKP29376 864 aa19.99■□□□□ 0.79
CLSTN3-208ENST00000538933 ERVK-7P63135 1459 aa19.99■□□□□ 0.79
CLSTN3-208ENST00000538933 NCOA2Q15596 1464 aa19.99■□□□□ 0.79
CLSTN3-208ENST00000538933 CEP162Q5TB80 1403 aa19.98■□□□□ 0.79
CLSTN3-208ENST00000538933 SCAF11Q99590 1463 aaKnown RBP19.98■□□□□ 0.79
CLSTN3-208ENST00000538933 RSPH4AQ5TD94 716 aa19.97■□□□□ 0.79
CLSTN3-208ENST00000538933 ARHGAP23Q9P227 1491 aa19.97■□□□□ 0.79
CLSTN3-208ENST00000538933 EHBP1L1Q8N3D4 1523 aa19.97■□□□□ 0.79
CLSTN3-208ENST00000538933 SETD1AO15047 1707 aaKnown RBP19.96■□□□□ 0.79
CLSTN3-208ENST00000538933 CAMSAP2Q08AD1 1489 aa19.96■□□□□ 0.79
CLSTN3-208ENST00000538933 SLIT1O75093 1534 aa19.95■□□□□ 0.78
CLSTN3-208ENST00000538933 ARHGEF5Q12774 1597 aa19.93■□□□□ 0.78
CLSTN3-208ENST00000538933 MROH1Q8NDA8 1641 aa19.93■□□□□ 0.78
CLSTN3-208ENST00000538933 ROBO1Q9Y6N7 1651 aa19.92■□□□□ 0.78
CLSTN3-208ENST00000538933 TXNDC2Q86VQ3 553 aa19.92■□□□□ 0.78
CLSTN3-208ENST00000538933 CEP152O94986 1710 aa19.9■□□□□ 0.78
CLSTN3-208ENST00000538933 SRCAPQ6ZRS2 3230 aa19.89■□□□□ 0.77
CLSTN3-208ENST00000538933 EIF2AK4Q9P2K8 1649 aaKnown RBP19.88■□□□□ 0.77
CLSTN3-208ENST00000538933 TMEM94Q12767 1356 aa19.87■□□□□ 0.77
CLSTN3-208ENST00000538933 TSPY4P0CV99 314 aa19.87■□□□□ 0.77
CLSTN3-208ENST00000538933 TSPY10P0CW01 314 aa19.87■□□□□ 0.77
CLSTN3-208ENST00000538933 MAP3K1Q13233 1512 aa19.86■□□□□ 0.77
CLSTN3-208ENST00000538933 MAST1Q9Y2H9 1570 aa19.86■□□□□ 0.77
CLSTN3-208ENST00000538933 TET3O43151 1660 aa19.82■□□□□ 0.76
CLSTN3-208ENST00000538933 KCNA6P17658 529 aa19.82■□□□□ 0.76
CLSTN3-208ENST00000538933 UPF1Q92900 1129 aaKnown RBP eCLIP19.82■□□□□ 0.76
CLSTN3-208ENST00000538933 EID1Q9Y6B2 187 aa19.82■□□□□ 0.76
CLSTN3-208ENST00000538933 PIK3C2BO00750 1634 aa19.82■□□□□ 0.76
CLSTN3-208ENST00000538933 ARHGAP31Q2M1Z3 1444 aa19.82■□□□□ 0.76
CLSTN3-208ENST00000538933 TMEM2Q9UHN6 1383 aa19.82■□□□□ 0.76
CLSTN3-208ENST00000538933 RBM33Q96EV2 1170 aaKnown RBP19.81■□□□□ 0.76
CLSTN3-208ENST00000538933 PHLPP1O60346 1717 aa19.8■□□□□ 0.76
CLSTN3-208ENST00000538933 LOC105371045A0A1W2PR82 267 aa19.79■□□□□ 0.76
CLSTN3-208ENST00000538933 LRRC9Q6ZRR7 1453 aa19.79■□□□□ 0.76
CLSTN3-208ENST00000538933 PROSER2Q86WR7 435 aaPredicted RBP19.78■□□□□ 0.76
CLSTN3-208ENST00000538933 KDM5AP29375 1690 aaKnown RBP19.78■□□□□ 0.76
CLSTN3-208ENST00000538933 PRDM15P57071 1507 aaPredicted RBP19.77■□□□□ 0.76
CLSTN3-208ENST00000538933 JCADQ9P266 1359 aa19.77■□□□□ 0.76
CLSTN3-208ENST00000538933 SLAIN2Q9P270 581 aa19.76■□□□□ 0.75
CLSTN3-208ENST00000538933 NWD1Q149M9 1564 aa19.75■□□□□ 0.75
CLSTN3-208ENST00000538933 SLC26A8Q96RN1 970 aa19.75■□□□□ 0.75
CLSTN3-208ENST00000538933 COL16A1Q07092 1604 aaPredicted RBP19.75■□□□□ 0.75
CLSTN3-208ENST00000538933 LRP6O75581 1613 aa19.73■□□□□ 0.75
CLSTN3-208ENST00000538933 DUOX2Q9NRD8 1548 aa19.73■□□□□ 0.75
CLSTN3-208ENST00000538933 NKTRP30414 1462 aaKnown RBP19.73■□□□□ 0.75
CLSTN3-208ENST00000538933 EFCAB6Q5THR3 1501 aa19.72■□□□□ 0.75
CLSTN3-208ENST00000538933 IDI1Q13907 227 aa19.71■□□□□ 0.75
CLSTN3-208ENST00000538933 CHD2O14647 1828 aaKnown RBP19.69■□□□□ 0.74
CLSTN3-208ENST00000538933 MSH6P52701 1360 aa19.69■□□□□ 0.74
CLSTN3-208ENST00000538933 ZNF772Q68DY9 489 aaPredicted RBP19.67■□□□□ 0.74
CLSTN3-208ENST00000538933 TRIM52Q96A61 297 aa19.67■□□□□ 0.74
CLSTN3-208ENST00000538933 SPATA31A6Q5VVP1 1343 aa19.67■□□□□ 0.74
CLSTN3-208ENST00000538933 STAG3Q9UJ98 1225 aa19.66■□□□□ 0.74
CLSTN3-208ENST00000538933 FGD6Q6ZV73 1430 aa19.66■□□□□ 0.74
CLSTN3-208ENST00000538933 SHPRHQ149N8 1683 aa19.64■□□□□ 0.73
CLSTN3-208ENST00000538933 ERBINQ96RT1 1412 aa19.63■□□□□ 0.73
CLSTN3-208ENST00000538933 KIF15Q9NS87 1388 aa19.63■□□□□ 0.73
CLSTN3-208ENST00000538933 MYOM3Q5VTT5 1437 aa19.62■□□□□ 0.73
CLSTN3-208ENST00000538933 LMTK2Q8IWU2 1503 aa19.61■□□□□ 0.73
CLSTN3-208ENST00000538933 CDK12Q9NYV4 1490 aaPredicted RBP19.61■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms