RNA–Protein interactions for RNA: ENST00000538548.5

SFSWAP-207, Transcript of splicing factor SWAP, humanhuman

TSL 5

Gene SFSWAP, Length 2,636 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-207ENST00000538548 NFKBIBQ15653 356 aa24.53■■□□□ 1.52
SFSWAP-207ENST00000538548 ZNF644Q9H582 1327 aaPredicted RBP24.52■■□□□ 1.52
SFSWAP-207ENST00000538548 NLRP13Q86W25 1043 aa24.51■■□□□ 1.51
SFSWAP-207ENST00000538548 CARD11Q9BXL7 1154 aa24.51■■□□□ 1.51
SFSWAP-207ENST00000538548 ARHGEF12Q9NZN5 1544 aa24.48■■□□□ 1.51
SFSWAP-207ENST00000538548 KIAA0556O60303 1618 aa24.48■■□□□ 1.51
SFSWAP-207ENST00000538548 ADGBQ8N7X0 1667 aa24.47■■□□□ 1.51
SFSWAP-207ENST00000538548 PKD2Q13563 968 aa24.47■■□□□ 1.51
SFSWAP-207ENST00000538548 UBE2Q2Q8WVN8 375 aa24.47■■□□□ 1.51
SFSWAP-207ENST00000538548 PARD3Q8TEW0 1356 aa24.47■■□□□ 1.51
SFSWAP-207ENST00000538548 PLB1Q6P1J6 1458 aa24.46■■□□□ 1.51
SFSWAP-207ENST00000538548 ST20-MTHFSA0A0A6YYL1 179 aa24.45■■□□□ 1.5
SFSWAP-207ENST00000538548 NUP160Q12769 1436 aa24.45■■□□□ 1.5
SFSWAP-207ENST00000538548 INSRP06213 1382 aa24.44■■□□□ 1.5
SFSWAP-207ENST00000538548 FRAT1Q92837 279 aaPredicted RBP24.44■■□□□ 1.5
SFSWAP-207ENST00000538548 CDCA7LQ96GN5 454 aa24.44■■□□□ 1.5
SFSWAP-207ENST00000538548 CRBNQ96SW2 442 aa24.43■■□□□ 1.5
SFSWAP-207ENST00000538548 DAXXQ9UER7 740 aaPredicted RBP24.43■■□□□ 1.5
SFSWAP-207ENST00000538548 ADGRL2O95490 1459 aa24.42■■□□□ 1.5
SFSWAP-207ENST00000538548 ZMYM4Q5VZL5 1548 aa24.42■■□□□ 1.5
SFSWAP-207ENST00000538548 PLIN1O60240 522 aa24.42■■□□□ 1.5
SFSWAP-207ENST00000538548 CAMSAP2Q08AD1 1489 aa24.4■■□□□ 1.5
SFSWAP-207ENST00000538548 SKAP1Q86WV1 359 aa24.4■■□□□ 1.5
SFSWAP-207ENST00000538548 KDM2BQ8NHM5 1336 aa24.38■■□□□ 1.49
SFSWAP-207ENST00000538548 BLMP54132 1417 aaPredicted RBP24.38■■□□□ 1.49
SFSWAP-207ENST00000538548 NUP153P49790 1475 aaKnown RBP24.37■■□□□ 1.49
SFSWAP-207ENST00000538548 PLEKHH2Q8IVE3 1493 aa24.36■■□□□ 1.49
SFSWAP-207ENST00000538548 SLC4A3P48751 1232 aa24.36■■□□□ 1.49
SFSWAP-207ENST00000538548 CHD1O14646 1710 aa24.36■■□□□ 1.49
SFSWAP-207ENST00000538548 CROCC2H7BZ55 1655 aa24.35■■□□□ 1.49
SFSWAP-207ENST00000538548 PRG4Q92954 1404 aaPredicted RBP24.35■■□□□ 1.49
SFSWAP-207ENST00000538548 CENPQQ7L2Z9 268 aaPredicted RBP24.34■■□□□ 1.49
SFSWAP-207ENST00000538548 ANKRD30AQ9BXX3 1397 aa24.33■■□□□ 1.49
SFSWAP-207ENST00000538548 FAM161AQ3B820 660 aa24.33■■□□□ 1.49
SFSWAP-207ENST00000538548 ITSN2Q9NZM3 1697 aa24.33■■□□□ 1.49
SFSWAP-207ENST00000538548 CARMIL2Q6F5E8 1435 aa24.33■■□□□ 1.49
SFSWAP-207ENST00000538548 ANKRD50Q9ULJ7 1429 aa24.32■■□□□ 1.48
SFSWAP-207ENST00000538548 CFDP1Q9UEE9 299 aaPredicted RBP24.31■■□□□ 1.48
SFSWAP-207ENST00000538548 PER1O15534 1290 aaPredicted RBP24.3■■□□□ 1.48
SFSWAP-207ENST00000538548 C8orf34Q49A92 452 aa24.3■■□□□ 1.48
SFSWAP-207ENST00000538548 FAM43AQ8N2R8 423 aa24.28■■□□□ 1.48
SFSWAP-207ENST00000538548 RAPGEF6Q8TEU7 1601 aa24.28■■□□□ 1.48
SFSWAP-207ENST00000538548 EIF5BO60841 1220 aaKnown RBP24.28■■□□□ 1.48
SFSWAP-207ENST00000538548 KDM2AQ9Y2K7 1162 aa24.28■■□□□ 1.48
SFSWAP-207ENST00000538548 C20orf194Q5TEA3 1177 aa24.27■■□□□ 1.48
SFSWAP-207ENST00000538548 RSPH6AQ9H0K4 717 aa24.27■■□□□ 1.48
SFSWAP-207ENST00000538548 TROQ12816 1431 aaPredicted RBP24.26■■□□□ 1.47
SFSWAP-207ENST00000538548 NUP155O75694 1391 aa24.26■■□□□ 1.47
SFSWAP-207ENST00000538548 FRAT2O75474 233 aaPredicted RBP24.26■■□□□ 1.47
SFSWAP-207ENST00000538548 DCAF11Q8TEB1 546 aa24.26■■□□□ 1.47
SFSWAP-207ENST00000538548 GPATCH8Q9UKJ3 1502 aaKnown RBP24.26■■□□□ 1.47
SFSWAP-207ENST00000538548 ERCC6L2Q5T890 1561 aa24.25■■□□□ 1.47
SFSWAP-207ENST00000538548 ZNF777Q9ULD5 760 aaPredicted RBP24.25■■□□□ 1.47
SFSWAP-207ENST00000538548 KDM5DQ9BY66 1539 aa24.24■■□□□ 1.47
SFSWAP-207ENST00000538548 PTPRGP23470 1445 aa24.21■■□□□ 1.47
SFSWAP-207ENST00000538548 TRPM1Q7Z4N2 1603 aa24.19■■□□□ 1.46
SFSWAP-207ENST00000538548 COL17A1Q9UMD9 1497 aaPredicted RBP24.18■■□□□ 1.46
SFSWAP-207ENST00000538548 CC2D1BQ5T0F9 858 aaKnown RBP24.18■■□□□ 1.46
SFSWAP-207ENST00000538548 ADCY10Q96PN6 1610 aa24.18■■□□□ 1.46
SFSWAP-207ENST00000538548 SHANK2Q9UPX8 1470 aa24.17■■□□□ 1.46
SFSWAP-207ENST00000538548 PRAG1Q86YV5 1406 aa24.16■■□□□ 1.46
SFSWAP-207ENST00000538548 GOLGA6L2Q8N9W4 650 aaPredicted RBP24.15■■□□□ 1.46
SFSWAP-207ENST00000538548 DUSP27Q5VZP5 1158 aa24.14■■□□□ 1.45
SFSWAP-207ENST00000538548 GPRASP1Q5JY77 1395 aa24.13■■□□□ 1.45
SFSWAP-207ENST00000538548 PLEKHD1A6NEE1 506 aa24.12■■□□□ 1.45
SFSWAP-207ENST00000538548 C9orf84Q5VXU9 1444 aa24.12■■□□□ 1.45
SFSWAP-207ENST00000538548 ATP10BO94823 1461 aa24.11■■□□□ 1.45
SFSWAP-207ENST00000538548 RGS3P49796 1198 aa24.1■■□□□ 1.45
SFSWAP-207ENST00000538548 PANK3Q9H999 370 aa24.1■■□□□ 1.45
SFSWAP-207ENST00000538548 ADAMTS8Q9UP79 889 aa24.1■■□□□ 1.45
SFSWAP-207ENST00000538548 LAMC1P11047 1609 aa24.1■■□□□ 1.45
SFSWAP-207ENST00000538548 DISP3Q9P2K9 1392 aa24.09■■□□□ 1.45
SFSWAP-207ENST00000538548 PLEKHH1Q9ULM0 1364 aa24.09■■□□□ 1.45
SFSWAP-207ENST00000538548 VIRMAQ69YN4 1812 aaKnown RBP24.08■■□□□ 1.45
SFSWAP-207ENST00000538548 CDC42BPAQ5VT25 1732 aa24.08■■□□□ 1.45
SFSWAP-207ENST00000538548 TESK2Q96S53 571 aa24.08■■□□□ 1.44
SFSWAP-207ENST00000538548 ZNF521Q96K83 1311 aa24.08■■□□□ 1.44
SFSWAP-207ENST00000538548 PRDM15P57071 1507 aaPredicted RBP24.07■■□□□ 1.44
SFSWAP-207ENST00000538548 ABCA8O94911 1581 aa24.06■■□□□ 1.44
SFSWAP-207ENST00000538548 GOLGA2Q08379 1002 aa24.06■■□□□ 1.44
SFSWAP-207ENST00000538548 NBPF1Q3BBV0 1214 aa24.05■■□□□ 1.44
SFSWAP-207ENST00000538548 EIF3AQ14152 1382 aaKnown RBP24.05■■□□□ 1.44
SFSWAP-207ENST00000538548 ERBINQ96RT1 1412 aa24.04■■□□□ 1.44
SFSWAP-207ENST00000538548 CLASP1Q7Z460 1538 aa24.03■■□□□ 1.44
SFSWAP-207ENST00000538548 CCDC144AA2RUR9 1427 aa24.02■■□□□ 1.44
SFSWAP-207ENST00000538548 USP19O94966 1318 aa24.02■■□□□ 1.44
SFSWAP-207ENST00000538548 POGKQ9P215 609 aa24.02■■□□□ 1.44
SFSWAP-207ENST00000538548 WDR43Q15061 677 aaKnown RBP eCLIP24.01■■□□□ 1.437e-6■■■■■ 27.3
SFSWAP-207ENST00000538548 L1TD1Q5T7N2 865 aaKnown RBP24.01■■□□□ 1.43
SFSWAP-207ENST00000538548 TSPY4P0CV99 314 aa24■■□□□ 1.43
SFSWAP-207ENST00000538548 TSPY10P0CW01 314 aa24■■□□□ 1.43
SFSWAP-207ENST00000538548 TMF1P82094 1093 aa24■■□□□ 1.43
SFSWAP-207ENST00000538548 FAM135AQ9P2D6 1515 aa24■■□□□ 1.43
SFSWAP-207ENST00000538548 BECN1Q14457 450 aa24■■□□□ 1.43
SFSWAP-207ENST00000538548 SLFN5Q08AF3 891 aa23.98■■□□□ 1.43
SFSWAP-207ENST00000538548 A2MP01023 1474 aa23.97■■□□□ 1.43
SFSWAP-207ENST00000538548 EIF2AK4Q9P2K8 1649 aaKnown RBP23.96■■□□□ 1.43
SFSWAP-207ENST00000538548 ABCC10Q5T3U5 1492 aa23.96■■□□□ 1.43
SFSWAP-207ENST00000538548 PPP2R1AP30153 589 aa23.96■■□□□ 1.43
SFSWAP-207ENST00000538548 TRMT2AQ8IZ69 625 aaKnown RBP23.96■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms