RNA–Protein interactions for RNA: ENST00000511421.5

SH3RF1-205, Transcript of SH3 domain containing ring finger 1, humanhuman

TSL 1 (best)

Gene SH3RF1, Length 1,657 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1-205ENST00000511421 KIF15Q9NS87 1388 aa17.96■□□□□ 0.47
SH3RF1-205ENST00000511421 DUOX2Q9NRD8 1548 aa17.96■□□□□ 0.47
SH3RF1-205ENST00000511421 RRP7BPQ9NSQ0 103 aa17.96■□□□□ 0.47
SH3RF1-205ENST00000511421 FAM135AQ9P2D6 1515 aa17.95■□□□□ 0.46
SH3RF1-205ENST00000511421 PPARGC1BQ86YN6 1023 aaKnown RBP17.95■□□□□ 0.46
SH3RF1-205ENST00000511421 CHIC2Q9UKJ5 165 aa17.95■□□□□ 0.46
SH3RF1-205ENST00000511421 WASHC2CQ9Y4E1 1318 aa17.95■□□□□ 0.46
SH3RF1-205ENST00000511421 KDM5DQ9BY66 1539 aa17.94■□□□□ 0.46
SH3RF1-205ENST00000511421 RNF17Q9BXT8 1623 aaKnown RBP17.94■□□□□ 0.46
SH3RF1-205ENST00000511421 EIF2AK4Q9P2K8 1649 aaKnown RBP17.93■□□□□ 0.46
SH3RF1-205ENST00000511421 ANKRD30AQ9BXX3 1397 aa17.92■□□□□ 0.46
SH3RF1-205ENST00000511421 NCOA1Q15788 1441 aa17.92■□□□□ 0.46
SH3RF1-205ENST00000511421 ERBINQ96RT1 1412 aa17.91■□□□□ 0.46
SH3RF1-205ENST00000511421 FBXO31Q5XUX0 539 aaPredicted RBP17.9■□□□□ 0.46
SH3RF1-205ENST00000511421 MROH1Q8NDA8 1641 aa17.9■□□□□ 0.46
SH3RF1-205ENST00000511421 ADGRL2O95490 1459 aa17.9■□□□□ 0.46
SH3RF1-205ENST00000511421 PZPP20742 1482 aa17.89■□□□□ 0.45
SH3RF1-205ENST00000511421 ABCC3O15438 1527 aa17.88■□□□□ 0.45
SH3RF1-205ENST00000511421 STRCQ7RTU9 1775 aa17.85■□□□□ 0.45
SH3RF1-205ENST00000511421 MYO3AQ8NEV4 1616 aa17.85■□□□□ 0.45
SH3RF1-205ENST00000511421 TNRQ92752 1358 aa17.84■□□□□ 0.45
SH3RF1-205ENST00000511421 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.84■□□□□ 0.45
SH3RF1-205ENST00000511421 PRDM15P57071 1507 aaPredicted RBP17.84■□□□□ 0.45
SH3RF1-205ENST00000511421 ZC3H13Q5T200 1668 aaKnown RBP17.83■□□□□ 0.45
SH3RF1-205ENST00000511421 CEP170BQ9Y4F5 1589 aaPredicted RBP17.83■□□□□ 0.44
SH3RF1-205ENST00000511421 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.82■□□□□ 0.44
SH3RF1-205ENST00000511421 ZNF142P52746 1687 aaPredicted RBP17.82■□□□□ 0.44
SH3RF1-205ENST00000511421 DEPDC5O75140 1603 aa17.82■□□□□ 0.44
SH3RF1-205ENST00000511421 DMRT2Q9Y5R5 561 aa17.81■□□□□ 0.44
SH3RF1-205ENST00000511421 A2ML1A8K2U0 1454 aa17.81■□□□□ 0.44
SH3RF1-205ENST00000511421 CAMSAP1Q5T5Y3 1602 aa17.8■□□□□ 0.44
SH3RF1-205ENST00000511421 ANKRD50Q9ULJ7 1429 aa17.8■□□□□ 0.44
SH3RF1-205ENST00000511421 CEP152O94986 1710 aa17.8■□□□□ 0.44
SH3RF1-205ENST00000511421 ROCK1Q13464 1354 aa17.79■□□□□ 0.44
SH3RF1-205ENST00000511421 RRBP1Q9P2E9 1410 aaKnown RBP17.79■□□□□ 0.44
SH3RF1-205ENST00000511421 PTPRTO14522 1441 aa17.78■□□□□ 0.44
SH3RF1-205ENST00000511421 ARHGAP31Q2M1Z3 1444 aa17.78■□□□□ 0.44
SH3RF1-205ENST00000511421 KANK1Q14678 1352 aa17.78■□□□□ 0.44
SH3RF1-205ENST00000511421 ERVK-7P63135 1459 aa17.78■□□□□ 0.44
SH3RF1-205ENST00000511421 SPATA31D1Q6ZQQ2 1576 aa17.78■□□□□ 0.44
SH3RF1-205ENST00000511421 VWDEQ8N2E2 1590 aa17.78■□□□□ 0.44
SH3RF1-205ENST00000511421 PLA2R1Q13018 1463 aa17.77■□□□□ 0.44
SH3RF1-205ENST00000511421 ITGAEP38570 1179 aa17.77■□□□□ 0.43
SH3RF1-205ENST00000511421 NLRP1Q9C000 1473 aa17.77■□□□□ 0.43
SH3RF1-205ENST00000511421 NCKAP5LQ9HCH0 1330 aa17.76■□□□□ 0.43
SH3RF1-205ENST00000511421 LMTK2Q8IWU2 1503 aa17.76■□□□□ 0.43
SH3RF1-205ENST00000511421 PKD2Q13563 968 aa17.74■□□□□ 0.43
SH3RF1-205ENST00000511421 ILDR1Q86SU0 546 aaPredicted RBP17.74■□□□□ 0.43
SH3RF1-205ENST00000511421 THEMISQ8N1K5 641 aaPredicted RBP17.71■□□□□ 0.43
SH3RF1-205ENST00000511421 CFAP65Q6ZU64 1925 aaKnown RBP17.71■□□□□ 0.43
SH3RF1-205ENST00000511421 UGGT1Q9NYU2 1555 aa17.7■□□□□ 0.42
SH3RF1-205ENST00000511421 CERKQ8TCT0 537 aa17.68■□□□□ 0.42
SH3RF1-205ENST00000511421 EFCAB6Q5THR3 1501 aa17.67■□□□□ 0.42
SH3RF1-205ENST00000511421 UNC13BO14795 1591 aa17.67■□□□□ 0.42
SH3RF1-205ENST00000511421 NOS1P29475 1434 aa17.66■□□□□ 0.42
SH3RF1-205ENST00000511421 ANKLE2Q86XL3 938 aa17.66■□□□□ 0.42
SH3RF1-205ENST00000511421 FBXO41Q8TF61 875 aa17.66■□□□□ 0.42
SH3RF1-205ENST00000511421 NEURL4Q96JN8 1562 aa17.64■□□□□ 0.41
SH3RF1-205ENST00000511421 RPRD2Q5VT52 1461 aaKnown RBP17.63■□□□□ 0.41
SH3RF1-205ENST00000511421 LTBP4Q8N2S1 1624 aa17.63■□□□□ 0.41
SH3RF1-205ENST00000511421 IDI1Q13907 227 aa17.63■□□□□ 0.41
SH3RF1-205ENST00000511421 TET3O43151 1660 aa17.62■□□□□ 0.41
SH3RF1-205ENST00000511421 NUP155O75694 1391 aa17.62■□□□□ 0.41
SH3RF1-205ENST00000511421 SYNMO15061 1565 aa17.62■□□□□ 0.41
SH3RF1-205ENST00000511421 UBR1Q8IWV7 1749 aa17.62■□□□□ 0.41
SH3RF1-205ENST00000511421 NAIPQ13075 1403 aa17.61■□□□□ 0.41
SH3RF1-205ENST00000511421 ZNF335Q9H4Z2 1342 aaPredicted RBP17.61■□□□□ 0.41
SH3RF1-205ENST00000511421 MED14O60244 1454 aa17.61■□□□□ 0.41
SH3RF1-205ENST00000511421 POLR1AO95602 1720 aaPredicted RBP17.6■□□□□ 0.41
SH3RF1-205ENST00000511421 IQGAP3Q86VI3 1631 aa17.59■□□□□ 0.41
SH3RF1-205ENST00000511421 ARHGAP23Q9P227 1491 aa17.59■□□□□ 0.41
SH3RF1-205ENST00000511421 SLC52A1Q9NWF4 448 aa17.59■□□□□ 0.41
SH3RF1-205ENST00000511421 PIK3C2BO00750 1634 aa17.59■□□□□ 0.41
SH3RF1-205ENST00000511421 NPHP4O75161 1426 aaPredicted RBP17.59■□□□□ 0.41
SH3RF1-205ENST00000511421 SLIT1O75093 1534 aa17.58■□□□□ 0.4
SH3RF1-205ENST00000511421 LTKP29376 864 aa17.58■□□□□ 0.4
SH3RF1-205ENST00000511421 GCC2Q8IWJ2 1684 aa17.57■□□□□ 0.4
SH3RF1-205ENST00000511421 HFM1A2PYH4 1435 aa17.56■□□□□ 0.4
SH3RF1-205ENST00000511421 TMEM2Q9UHN6 1383 aa17.56■□□□□ 0.4
SH3RF1-205ENST00000511421 STAG3Q9UJ98 1225 aa17.56■□□□□ 0.4
SH3RF1-205ENST00000511421 SCAF11Q99590 1463 aaKnown RBP17.55■□□□□ 0.4
SH3RF1-205ENST00000511421 TXNDC2Q86VQ3 553 aa17.55■□□□□ 0.4
SH3RF1-205ENST00000511421 E9PCH4 1651 aa17.55■□□□□ 0.4
SH3RF1-205ENST00000511421 KDM5AP29375 1690 aaKnown RBP17.54■□□□□ 0.4
SH3RF1-205ENST00000511421 EID1Q9Y6B2 187 aa17.52■□□□□ 0.4
SH3RF1-205ENST00000511421 ADGRB3O60242 1522 aa17.52■□□□□ 0.4
SH3RF1-205ENST00000511421 IQGAP1P46940 1657 aa17.52■□□□□ 0.39
SH3RF1-205ENST00000511421 IQSEC2Q5JU85 1478 aa17.52■□□□□ 0.39
SH3RF1-205ENST00000511421 TMEM131LA2VDJ0 1609 aa17.46■□□□□ 0.39
SH3RF1-205ENST00000511421 TRIM52Q96A61 297 aa17.46■□□□□ 0.39
SH3RF1-205ENST00000511421 CPS1P31327 1500 aa17.46■□□□□ 0.39
SH3RF1-205ENST00000511421 ZFYVE9O95405 1425 aa17.46■□□□□ 0.38
SH3RF1-205ENST00000511421 CHGAP10645 457 aaKnown RBP17.44■□□□□ 0.38
SH3RF1-205ENST00000511421 RIMS2Q9UQ26 1411 aa17.44■□□□□ 0.38
SH3RF1-205ENST00000511421 MYO5BQ9ULV0 1848 aa17.43■□□□□ 0.38
SH3RF1-205ENST00000511421 STRCP1A6NGW2 1772 aa17.41■□□□□ 0.38
SH3RF1-205ENST00000511421 HDGFP51858 240 aaKnown RBP17.41■□□□□ 0.38
SH3RF1-205ENST00000511421 SLC4A1APQ9BWU0 796 aaKnown RBP17.41■□□□□ 0.38
SH3RF1-205ENST00000511421 SPHKAPQ2M3C7 1700 aa17.41■□□□□ 0.38
SH3RF1-205ENST00000511421 SLC26A8Q96RN1 970 aa17.4■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms