RNA–Protein interactions for RNA: ENST00000511421.5

SH3RF1-205, Transcript of SH3 domain containing ring finger 1, humanhuman

TSL 1 (best)

Gene SH3RF1, Length 1,657 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1-205ENST00000511421 NISCHQ9Y2I1 1504 aa28.52■■■□□ 2.16
SH3RF1-205ENST00000511421 CCDC180Q9P1Z9 1646 aa25.37■■□□□ 1.65
SH3RF1-205ENST00000511421 ABCC9O60706 1549 aa25.02■■□□□ 1.6
SH3RF1-205ENST00000511421 RB1CC1Q8TDY2 1594 aa23.96■■□□□ 1.43
SH3RF1-205ENST00000511421 NACADO15069 1562 aa23.92■■□□□ 1.42
SH3RF1-205ENST00000511421 DCAF8L2P0C7V8 631 aa23.89■■□□□ 1.42
SH3RF1-205ENST00000511421 MYO15BQ96JP2 1530 aa23.75■■□□□ 1.39
SH3RF1-205ENST00000511421 ZCCHC6Q5VYS8 1495 aaKnown RBP23.73■■□□□ 1.39
SH3RF1-205ENST00000511421 DCAF1Q9Y4B6 1507 aa23.59■■□□□ 1.37
SH3RF1-205ENST00000511421 UNC13AQ9UPW8 1703 aa23.4■■□□□ 1.34
SH3RF1-205ENST00000511421 PABPN1Q86U42 306 aaKnown RBP eCLIP23.39■■□□□ 1.34
SH3RF1-205ENST00000511421 BICRAQ9NZM4 1560 aa23.29■■□□□ 1.32
SH3RF1-205ENST00000511421 DNAJC5BQ9UF47 199 aa23.19■■□□□ 1.3
SH3RF1-205ENST00000511421 SCRIBQ14160 1630 aa23.15■■□□□ 1.3
SH3RF1-205ENST00000511421 SHROOM4Q9ULL8 1493 aa23■■□□□ 1.27
SH3RF1-205ENST00000511421 EIF4G1Q04637 1599 aaKnown RBP22.67■■□□□ 1.22
SH3RF1-205ENST00000511421 CC2D2AQ9P2K1 1620 aa22.61■■□□□ 1.21
SH3RF1-205ENST00000511421 CECR2Q9BXF3 1484 aa22.5■■□□□ 1.19
SH3RF1-205ENST00000511421 SMARCA4P51532 1647 aa22.14■■□□□ 1.13
SH3RF1-205ENST00000511421 NCAPD3P42695 1498 aa22.11■■□□□ 1.13
SH3RF1-205ENST00000511421 ATAD2BQ9ULI0 1458 aa22.1■■□□□ 1.13
SH3RF1-205ENST00000511421 BAZ1AQ9NRL2 1556 aaPredicted RBP22.09■■□□□ 1.13
SH3RF1-205ENST00000511421 SMARCA2P51531 1590 aa22.02■■□□□ 1.12
SH3RF1-205ENST00000511421 MROH2BQ7Z745 1585 aa21.99■■□□□ 1.11
SH3RF1-205ENST00000511421 HMGXB3Q12766 1538 aa21.95■■□□□ 1.1
SH3RF1-205ENST00000511421 PEG3Q9GZU2 1588 aa21.94■■□□□ 1.1
SH3RF1-205ENST00000511421 BAZ1BQ9UIG0 1483 aaKnown RBP21.87■■□□□ 1.09
SH3RF1-205ENST00000511421 WIZO95785 1651 aa21.71■■□□□ 1.07
SH3RF1-205ENST00000511421 RSF1Q96T23 1441 aaPredicted RBP21.7■■□□□ 1.06
SH3RF1-205ENST00000511421 NESP48681 1621 aa21.62■■□□□ 1.05
SH3RF1-205ENST00000511421 ERCC6Q03468 1493 aa21.55■■□□□ 1.04
SH3RF1-205ENST00000511421 LAMC3Q9Y6N6 1575 aa21.51■■□□□ 1.03
SH3RF1-205ENST00000511421 TOP2AP11388 1531 aaKnown RBP21.48■■□□□ 1.03
SH3RF1-205ENST00000511421 CADPSQ9ULU8 1353 aa21.46■■□□□ 1.03
SH3RF1-205ENST00000511421 CUX2O14529 1486 aa21.4■■□□□ 1.02
SH3RF1-205ENST00000511421 PDS5BQ9NTI5 1447 aa21.39■■□□□ 1.02
SH3RF1-205ENST00000511421 KIF21AQ7Z4S6 1674 aa21.3■■□□□ 1
SH3RF1-205ENST00000511421 THOC2Q8NI27 1593 aaKnown RBP21.3■■□□□ 1
SH3RF1-205ENST00000511421 CFTRP13569 1480 aa21.29■■□□□ 1
SH3RF1-205ENST00000511421 CCDC88BA6NC98 1476 aa21.25■□□□□ 0.99
SH3RF1-205ENST00000511421 FANCD2Q9BXW9 1451 aa21.19■□□□□ 0.98
SH3RF1-205ENST00000511421 MRC2Q9UBG0 1479 aa21.18■□□□□ 0.98
SH3RF1-205ENST00000511421 CEP164Q9UPV0 1460 aa21.17■□□□□ 0.98
SH3RF1-205ENST00000511421 WDR62O43379 1518 aa21.11■□□□□ 0.97
SH3RF1-205ENST00000511421 PRDM2Q13029 1718 aa21.02■□□□□ 0.96
SH3RF1-205ENST00000511421 SUPT5HO00267 1087 aaKnown RBP21.02■□□□□ 0.95
SH3RF1-205ENST00000511421 URB2Q14146 1524 aaKnown RBP21■□□□□ 0.95
SH3RF1-205ENST00000511421 DNAJC5Q9H3Z4 198 aa20.98■□□□□ 0.95
SH3RF1-205ENST00000511421 TOPBP1Q92547 1522 aa20.84■□□□□ 0.93
SH3RF1-205ENST00000511421 ABCC8Q09428 1581 aa20.81■□□□□ 0.92
SH3RF1-205ENST00000511421 DNMBPQ6XZF7 1577 aa20.78■□□□□ 0.92
SH3RF1-205ENST00000511421 IFT140Q96RY7 1462 aa20.74■□□□□ 0.91
SH3RF1-205ENST00000511421 ZNF608Q9ULD9 1512 aaPredicted RBP20.68■□□□□ 0.9
SH3RF1-205ENST00000511421 POLA1P09884 1462 aaPredicted RBP20.65■□□□□ 0.9
SH3RF1-205ENST00000511421 CUX1P39880 1505 aa20.63■□□□□ 0.89
SH3RF1-205ENST00000511421 TARBP1Q13395 1621 aaKnown RBP20.61■□□□□ 0.89
SH3RF1-205ENST00000511421 RAD54L2Q9Y4B4 1467 aa20.58■□□□□ 0.89
SH3RF1-205ENST00000511421 SOGA1O94964 1423 aa20.58■□□□□ 0.88
SH3RF1-205ENST00000511421 FGD5Q6ZNL6 1462 aa20.58■□□□□ 0.88
SH3RF1-205ENST00000511421 AQRO60306 1485 aaKnown RBP eCLIP20.55■□□□□ 0.88
SH3RF1-205ENST00000511421 EIF4G3O43432 1585 aaKnown RBP20.54■□□□□ 0.88
SH3RF1-205ENST00000511421 OSCARQ8IYS5 282 aa20.51■□□□□ 0.87
SH3RF1-205ENST00000511421 TDRD9Q8NDG6 1382 aaKnown RBP20.49■□□□□ 0.87
SH3RF1-205ENST00000511421 WRNQ14191 1432 aaPredicted RBP eCLIP20.44■□□□□ 0.86
SH3RF1-205ENST00000511421 WDR97A6NE52 1622 aa20.41■□□□□ 0.86
SH3RF1-205ENST00000511421 TOP2BQ02880 1626 aa20.38■□□□□ 0.85
SH3RF1-205ENST00000511421 SYNJ1O43426 1573 aa20.38■□□□□ 0.85
SH3RF1-205ENST00000511421 ABCA10Q8WWZ4 1543 aa20.38■□□□□ 0.85
SH3RF1-205ENST00000511421 BIVM-ERCC5R4GMW8 1640 aa20.37■□□□□ 0.85
SH3RF1-205ENST00000511421 GRIN2BQ13224 1484 aa20.34■□□□□ 0.85
SH3RF1-205ENST00000511421 SNAPC4Q5SXM2 1469 aa20.33■□□□□ 0.85
SH3RF1-205ENST00000511421 GAPVD1Q14C86 1478 aa20.32■□□□□ 0.84
SH3RF1-205ENST00000511421 FBLN2P98095 1184 aa20.31■□□□□ 0.84
SH3RF1-205ENST00000511421 CHD1O14646 1710 aa20.29■□□□□ 0.84
SH3RF1-205ENST00000511421 MAGI1Q96QZ7 1491 aaPredicted RBP20.29■□□□□ 0.84
SH3RF1-205ENST00000511421 ABCA5Q8WWZ7 1642 aa20.28■□□□□ 0.84
SH3RF1-205ENST00000511421 CHMP7Q8WUX9 453 aaPredicted RBP20.24■□□□□ 0.83
SH3RF1-205ENST00000511421 PBRM1Q86U86 1689 aa20.23■□□□□ 0.83
SH3RF1-205ENST00000511421 SYNJ2O15056 1496 aa20.23■□□□□ 0.83
SH3RF1-205ENST00000511421 TRIM41Q8WV44 630 aa20.19■□□□□ 0.82
SH3RF1-205ENST00000511421 RIMBP3CA6NJZ7 1639 aa20.16■□□□□ 0.82
SH3RF1-205ENST00000511421 RIMBP3BA6NNM3 1639 aa20.16■□□□□ 0.82
SH3RF1-205ENST00000511421 RIMBP3Q9UFD9 1639 aa20.16■□□□□ 0.82
SH3RF1-205ENST00000511421 ARHGEF11O15085 1522 aa20.16■□□□□ 0.82
SH3RF1-205ENST00000511421 CLASP1Q7Z460 1538 aa20.12■□□□□ 0.81
SH3RF1-205ENST00000511421 ERICH3Q5RHP9 1530 aa20.11■□□□□ 0.81
SH3RF1-205ENST00000511421 ADAMTS12P58397 1594 aa20.1■□□□□ 0.81
SH3RF1-205ENST00000511421 FHAD1B1AJZ9 1412 aa20.08■□□□□ 0.81
SH3RF1-205ENST00000511421 GRIN2AQ12879 1464 aa20.08■□□□□ 0.8
SH3RF1-205ENST00000511421 NUP160Q12769 1436 aa20.02■□□□□ 0.79
SH3RF1-205ENST00000511421 KIF27Q86VH2 1401 aa20.02■□□□□ 0.79
SH3RF1-205ENST00000511421 CYB5RLQ6IPT4 315 aa20■□□□□ 0.79
SH3RF1-205ENST00000511421 ARAP1Q96P48 1450 aa20■□□□□ 0.79
SH3RF1-205ENST00000511421 IGF1RP08069 1367 aa20■□□□□ 0.79
SH3RF1-205ENST00000511421 CEP170Q5SW79 1584 aa19.98■□□□□ 0.79
SH3RF1-205ENST00000511421 CUL7Q14999 1698 aa19.86■□□□□ 0.77
SH3RF1-205ENST00000511421 CARMIL1Q5VZK9 1371 aa19.86■□□□□ 0.77
SH3RF1-205ENST00000511421 SHROOM2Q13796 1616 aa19.85■□□□□ 0.77
SH3RF1-205ENST00000511421 ERCC6L2Q5T890 1561 aa19.84■□□□□ 0.77
SH3RF1-205ENST00000511421 RUSC2Q8N2Y8 1516 aa19.82■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms