RNA–Protein interactions for RNA: ENST00000504220.6

PCDH11X-208, Transcript of protocadherin 11 X-linked, human

APPRIS ALT2 TSL 1 (best) BASIC

Gene PCDH11X, Length 4,017 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PCDH11X-208	ENST00000504220	MAGI3	Q5TCQ9	1506 aa		4.93	□□□□□ -1.62
PCDH11X-208	ENST00000504220	ASXL2	Q76L83	1435 aa		4.93	□□□□□ -1.62
PCDH11X-208	ENST00000504220	PRR29	P0C7W0	189 aa		4.92	□□□□□ -1.62
PCDH11X-208	ENST00000504220	HECW1	Q76N89	1606 aa		4.92	□□□□□ -1.62
PCDH11X-208	ENST00000504220	CFAP74	Q9C0B2	1584 aa		4.92	□□□□□ -1.62
PCDH11X-208	ENST00000504220	IRF6	O14896	467 aa		4.92	□□□□□ -1.62
PCDH11X-208	ENST00000504220	TPRN	Q4KMQ1	711 aa		4.92	□□□□□ -1.62
PCDH11X-208	ENST00000504220	NGEF	Q8N5V2	710 aa		4.92	□□□□□ -1.62
PCDH11X-208	ENST00000504220	NUP153	P49790	1475 aa	Known RBP	4.92	□□□□□ -1.62
PCDH11X-208	ENST00000504220	NOP58	Q9Y2X3	529 aa	Known RBP	4.92	□□□□□ -1.62
PCDH11X-208	ENST00000504220	VGLL3	A8MV65	326 aa		4.91	□□□□□ -1.62
PCDH11X-208	ENST00000504220	ARAP3	Q8WWN8	1544 aa		4.91	□□□□□ -1.62
PCDH11X-208	ENST00000504220	HNRNPU	Q00839	825 aa	Known RBP eCLIP	4.91	□□□□□ -1.62
PCDH11X-208	ENST00000504220	FAM9B	Q8IZU0	186 aa		4.91	□□□□□ -1.62
PCDH11X-208	ENST00000504220	TSPOAP1	O95153	1857 aa		4.91	□□□□□ -1.62
PCDH11X-208	ENST00000504220	KDM6B	O15054	1643 aa		4.91	□□□□□ -1.62
PCDH11X-208	ENST00000504220	FRMPD1	Q5SYB0	1578 aa		4.91	□□□□□ -1.62
PCDH11X-208	ENST00000504220	ARHGAP35	Q9NRY4	1499 aa		4.9	□□□□□ -1.62
PCDH11X-208	ENST00000504220	RICTOR	Q6R327	1708 aa		4.9	□□□□□ -1.62
PCDH11X-208	ENST00000504220	ATP10B	O94823	1461 aa		4.9	□□□□□ -1.62
PCDH11X-208	ENST00000504220	HSP90B1	P14625	803 aa	Known RBP	4.9	□□□□□ -1.63
PCDH11X-208	ENST00000504220	ZSCAN20	P17040	1043 aa	Predicted RBP	4.9	□□□□□ -1.63
PCDH11X-208	ENST00000504220	ANP32A	P39687	249 aa	Known RBP	4.9	□□□□□ -1.63
PCDH11X-208	ENST00000504220	PRDM16	Q9HAZ2	1276 aa		4.9	□□□□□ -1.63
PCDH11X-208	ENST00000504220	ZBTB22	O15209	634 aa		4.89	□□□□□ -1.63
PCDH11X-208	ENST00000504220	DDRGK1	Q96HY6	314 aa		4.89	□□□□□ -1.63
PCDH11X-208	ENST00000504220	ZNF692	Q9BU19	519 aa	Predicted RBP	4.89	□□□□□ -1.63
PCDH11X-208	ENST00000504220	MYCN	P04198	464 aa	Predicted RBP	4.89	□□□□□ -1.63
PCDH11X-208	ENST00000504220	HSP90AA2P	Q14568	343 aa	Predicted RBP	4.89	□□□□□ -1.63
PCDH11X-208	ENST00000504220	TEX14	Q8IWB6	1497 aa		4.89	□□□□□ -1.63
PCDH11X-208	ENST00000504220	MYO5C	Q9NQX4	1742 aa		4.89	□□□□□ -1.63
PCDH11X-208	ENST00000504220	PCF11	O94913	1555 aa	Known RBP	4.89	□□□□□ -1.63
PCDH11X-208	ENST00000504220	ZMYM4	Q5VZL5	1548 aa		4.88	□□□□□ -1.63
PCDH11X-208	ENST00000504220	TICAM2	Q86XR7	235 aa		4.88	□□□□□ -1.63
PCDH11X-208	ENST00000504220	TTC37	Q6PGP7	1564 aa		4.88	□□□□□ -1.63
PCDH11X-208	ENST00000504220	NPM1	P06748	294 aa	Known RBP eCLIP	4.88	□□□□□ -1.63
PCDH11X-208	ENST00000504220	CANX	P27824	592 aa	Known RBP	4.88	□□□□□ -1.63
PCDH11X-208	ENST00000504220	DNAJC14	Q6Y2X3	702 aa	Predicted RBP	4.88	□□□□□ -1.63
PCDH11X-208	ENST00000504220	GLIPR1L2	Q4G1C9	344 aa		4.88	□□□□□ -1.63
PCDH11X-208	ENST00000504220	FBXO41	Q8TF61	875 aa		4.88	□□□□□ -1.63
PCDH11X-208	ENST00000504220	PREX2	Q70Z35	1606 aa		4.87	□□□□□ -1.63
PCDH11X-208	ENST00000504220	GEMIN5	Q8TEQ6	1508 aa	Known RBP eCLIP	4.87	□□□□□ -1.63
PCDH11X-208	ENST00000504220	FYCO1	Q9BQS8	1478 aa		4.87	□□□□□ -1.63
PCDH11X-208	ENST00000504220	CDC42BPB	Q9Y5S2	1711 aa		4.87	□□□□□ -1.63
PCDH11X-208	ENST00000504220	NEO1	Q92859	1461 aa		4.87	□□□□□ -1.63
PCDH11X-208	ENST00000504220	CARD10	Q9BWT7	1032 aa		4.87	□□□□□ -1.63
PCDH11X-208	ENST00000504220	ZNF777	Q9ULD5	760 aa	Predicted RBP	4.87	□□□□□ -1.63
PCDH11X-208	ENST00000504220	SH3BP1	Q9Y3L3	701 aa		4.87	□□□□□ -1.63
PCDH11X-208	ENST00000504220	CDC42BPA	Q5VT25	1732 aa		4.86	□□□□□ -1.63
PCDH11X-208	ENST00000504220	SOCS7	O14512	581 aa		4.86	□□□□□ -1.63
PCDH11X-208	ENST00000504220	CFAP44	Q96MT7	982 aa		4.86	□□□□□ -1.63
PCDH11X-208	ENST00000504220	FMN1	Q68DA7	1419 aa		4.86	□□□□□ -1.63
PCDH11X-208	ENST00000504220	RIPK4	P57078	832 aa		4.86	□□□□□ -1.63
PCDH11X-208	ENST00000504220	ERBB4	Q15303	1308 aa		4.86	□□□□□ -1.63
PCDH11X-208	ENST00000504220	FHOD3	Q2V2M9	1422 aa		4.86	□□□□□ -1.63
PCDH11X-208	ENST00000504220	CCDC18	Q5T9S5	1454 aa		4.86	□□□□□ -1.63
PCDH11X-208	ENST00000504220	ITSN2	Q9NZM3	1697 aa		4.86	□□□□□ -1.63
PCDH11X-208	ENST00000504220	GTF3C5	Q9Y5Q8	519 aa	Predicted RBP	4.86	□□□□□ -1.63
PCDH11X-208	ENST00000504220	PHLDB1	Q86UU1	1377 aa		4.86	□□□□□ -1.63
PCDH11X-208	ENST00000504220	KIF14	Q15058	1648 aa		4.85	□□□□□ -1.63
PCDH11X-208	ENST00000504220	VIRMA	Q69YN4	1812 aa	Known RBP	4.85	□□□□□ -1.63
PCDH11X-208	ENST00000504220	UTP14C	Q5TAP6	766 aa	Known RBP	4.85	□□□□□ -1.63
PCDH11X-208	ENST00000504220	CASKIN1	Q8WXD9	1431 aa		4.85	□□□□□ -1.63
PCDH11X-208	ENST00000504220	RERE	Q9P2R6	1566 aa		4.85	□□□□□ -1.63
PCDH11X-208	ENST00000504220	KDM5C	P41229	1560 aa		4.85	□□□□□ -1.63
PCDH11X-208	ENST00000504220	ARHGEF40	Q8TER5	1519 aa		4.85	□□□□□ -1.63
PCDH11X-208	ENST00000504220	FRAT1	Q92837	279 aa	Predicted RBP	4.85	□□□□□ -1.63
PCDH11X-208	ENST00000504220	LMTK3	Q96Q04	1460 aa		4.84	□□□□□ -1.63
PCDH11X-208	ENST00000504220	COL17A1	Q9UMD9	1497 aa	Predicted RBP	4.84	□□□□□ -1.63
PCDH11X-208	ENST00000504220	DMTN	Q08495	405 aa		4.84	□□□□□ -1.63
PCDH11X-208	ENST00000504220	PDCL3	Q9H2J4	239 aa		4.84	□□□□□ -1.63
PCDH11X-208	ENST00000504220	SIGLEC1	Q9BZZ2	1709 aa		4.84	□□□□□ -1.63
PCDH11X-208	ENST00000504220	CDCA8	Q53HL2	280 aa		4.84	□□□□□ -1.63
PCDH11X-208	ENST00000504220	WWC1	Q8IX03	1113 aa		4.84	□□□□□ -1.63
PCDH11X-208	ENST00000504220	ZBTB47	Q9UFB7	747 aa	Predicted RBP	4.84	□□□□□ -1.63
PCDH11X-208	ENST00000504220	ADAMTSL3	P82987	1691 aa		4.84	□□□□□ -1.63
PCDH11X-208	ENST00000504220	CDK13	Q14004	1512 aa	Known RBP	4.84	□□□□□ -1.63
PCDH11X-208	ENST00000504220	EGFL6	Q8IUX8	553 aa		4.84	□□□□□ -1.64
PCDH11X-208	ENST00000504220	SLC20A2	Q08357	652 aa		4.83	□□□□□ -1.64
PCDH11X-208	ENST00000504220	CHMP4C	Q96CF2	233 aa		4.83	□□□□□ -1.64
PCDH11X-208	ENST00000504220	PUS7	Q96PZ0	661 aa	Known RBP	4.83	□□□□□ -1.64
PCDH11X-208	ENST00000504220	MAP3K1	Q13233	1512 aa		4.83	□□□□□ -1.64
PCDH11X-208	ENST00000504220	BCORL1	Q5H9F3	1711 aa		4.83	□□□□□ -1.64
PCDH11X-208	ENST00000504220	SMAP1	Q8IYB5	467 aa	Predicted RBP	4.83	□□□□□ -1.64
PCDH11X-208	ENST00000504220	IPO9	Q96P70	1041 aa	Known RBP	4.83	□□□□□ -1.64
PCDH11X-208	ENST00000504220	CLCN1	P35523	988 aa		4.82	□□□□□ -1.64
PCDH11X-208	ENST00000504220	GSE1	Q14687	1217 aa		4.82	□□□□□ -1.64
PCDH11X-208	ENST00000504220	USP35	Q9P2H5	1018 aa		4.82	□□□□□ -1.64
PCDH11X-208	ENST00000504220	ZHX1	Q9UKY1	873 aa	Predicted RBP	4.82	□□□□□ -1.64
PCDH11X-208	ENST00000504220	PPP4R3B	Q5MIZ7	849 aa		4.82	□□□□□ -1.64
PCDH11X-208	ENST00000504220	ZNF592	Q92610	1267 aa		4.82	□□□□□ -1.64
PCDH11X-208	ENST00000504220	CD109	Q6YHK3	1445 aa		4.82	□□□□□ -1.64
PCDH11X-208	ENST00000504220	HSP90AA1	P07900	732 aa	Known RBP	4.82	□□□□□ -1.64
PCDH11X-208	ENST00000504220	EP400NL	Q6ZTU2	488 aa		4.82	□□□□□ -1.64
PCDH11X-208	ENST00000504220	CLIP1	P30622	1438 aa		4.82	□□□□□ -1.64
PCDH11X-208	ENST00000504220	PPM1G	O15355	546 aa	Predicted RBP	4.81	□□□□□ -1.64
PCDH11X-208	ENST00000504220	CHIC2	Q9UKJ5	165 aa		4.81	□□□□□ -1.64
PCDH11X-208	ENST00000504220	ABCC1	P33527	1531 aa		4.81	□□□□□ -1.64
PCDH11X-208	ENST00000504220	FAM69C	Q0P6D2	419 aa		4.81	□□□□□ -1.64
PCDH11X-208	ENST00000504220	ARID4B	Q4LE39	1312 aa	Predicted RBP	4.81	□□□□□ -1.64

Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms