RNA–Protein interactions for RNA: ENST00000504220.6

PCDH11X-208, Transcript of protocadherin 11 X-linked, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PCDH11X, Length 4,017 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH11X-208ENST00000504220 NISCHQ9Y2I1 1504 aa7.43□□□□□ -1.22
PCDH11X-208ENST00000504220 CCDC180Q9P1Z9 1646 aa6.77□□□□□ -1.33
PCDH11X-208ENST00000504220 PRKCSHP14314 528 aaPredicted RBP6.72□□□□□ -1.33
PCDH11X-208ENST00000504220 PELP1Q8IZL8 1130 aaKnown RBP6.62□□□□□ -1.35
PCDH11X-208ENST00000504220 APLP2Q06481 763 aa6.59□□□□□ -1.36
PCDH11X-208ENST00000504220 MYT1Q01538 1121 aa6.44□□□□□ -1.38
PCDH11X-208ENST00000504220 SLC24A1O60721 1099 aa6.4□□□□□ -1.39
PCDH11X-208ENST00000504220 TTBK1Q5TCY1 1321 aaPredicted RBP6.38□□□□□ -1.39
PCDH11X-208ENST00000504220 FAM9AQ8IZU1 332 aaPredicted RBP6.37□□□□□ -1.39
PCDH11X-208ENST00000504220 ABCC9O60706 1549 aa6.36□□□□□ -1.39
PCDH11X-208ENST00000504220 SCAF1Q9H7N4 1312 aaKnown RBP6.35□□□□□ -1.39
PCDH11X-208ENST00000504220 MYO15BQ96JP2 1530 aa6.32□□□□□ -1.4
PCDH11X-208ENST00000504220 BCL11AQ9H165 835 aa6.29□□□□□ -1.4
PCDH11X-208ENST00000504220 NACADO15069 1562 aa6.28□□□□□ -1.4
PCDH11X-208ENST00000504220 DCAF8L2P0C7V8 631 aa6.27□□□□□ -1.41
PCDH11X-208ENST00000504220 RB1CC1Q8TDY2 1594 aa6.26□□□□□ -1.41
PCDH11X-208ENST00000504220 DCAF1Q9Y4B6 1507 aa6.26□□□□□ -1.41
PCDH11X-208ENST00000504220 UNC13AQ9UPW8 1703 aa6.24□□□□□ -1.41
PCDH11X-208ENST00000504220 ZCCHC6Q5VYS8 1495 aaKnown RBP6.22□□□□□ -1.41
PCDH11X-208ENST00000504220 HRCP23327 699 aa6.21□□□□□ -1.42
PCDH11X-208ENST00000504220 DAXXQ9UER7 740 aaPredicted RBP6.14□□□□□ -1.43
PCDH11X-208ENST00000504220 SHROOM4Q9ULL8 1493 aa6.13□□□□□ -1.43
PCDH11X-208ENST00000504220 BICRAQ9NZM4 1560 aa6.12□□□□□ -1.43
PCDH11X-208ENST00000504220 PPARGC1BQ86YN6 1023 aaKnown RBP6.1□□□□□ -1.43
PCDH11X-208ENST00000504220 ERICH6Q7L0X2 663 aa6.05□□□□□ -1.44
PCDH11X-208ENST00000504220 PLEKHG5O94827 1062 aa6.04□□□□□ -1.44
PCDH11X-208ENST00000504220 SCRIBQ14160 1630 aa5.98□□□□□ -1.45
PCDH11X-208ENST00000504220 AEBP2Q6ZN18 517 aaPredicted RBP5.96□□□□□ -1.46
PCDH11X-208ENST00000504220 SUPT5HO00267 1087 aaKnown RBP5.93□□□□□ -1.46
PCDH11X-208ENST00000504220 EHMT2Q96KQ7 1210 aa5.91□□□□□ -1.46
PCDH11X-208ENST00000504220 EIF4G1Q04637 1599 aaKnown RBP5.91□□□□□ -1.46
PCDH11X-208ENST00000504220 UBE2Q2Q8WVN8 375 aa5.9□□□□□ -1.47
PCDH11X-208ENST00000504220 ANO8Q9HCE9 1232 aaPredicted RBP5.89□□□□□ -1.47
PCDH11X-208ENST00000504220 CC2D2AQ9P2K1 1620 aa5.88□□□□□ -1.47
PCDH11X-208ENST00000504220 CSRNP3Q8WYN3 585 aa5.86□□□□□ -1.47
PCDH11X-208ENST00000504220 DNAJC5Q9H3Z4 198 aa5.86□□□□□ -1.47
PCDH11X-208ENST00000504220 EIF5BO60841 1220 aaKnown RBP5.85□□□□□ -1.47
PCDH11X-208ENST00000504220 DNAJC5BQ9UF47 199 aa5.85□□□□□ -1.47
PCDH11X-208ENST00000504220 NEUROD1Q13562 356 aa5.84□□□□□ -1.47
PCDH11X-208ENST00000504220 PABPN1Q86U42 306 aaKnown RBP eCLIP5.83□□□□□ -1.48
PCDH11X-208ENST00000504220 PEG3Q9GZU2 1588 aa5.83□□□□□ -1.48
PCDH11X-208ENST00000504220 SMARCA4P51532 1647 aa5.8□□□□□ -1.48
PCDH11X-208ENST00000504220 ACIN1Q9UKV3 1341 aaKnown RBP5.8□□□□□ -1.48
PCDH11X-208ENST00000504220 ANP32EQ9BTT0 268 aa5.79□□□□□ -1.48
PCDH11X-208ENST00000504220 HMGXB3Q12766 1538 aa5.78□□□□□ -1.48
PCDH11X-208ENST00000504220 CECR2Q9BXF3 1484 aa5.77□□□□□ -1.49
PCDH11X-208ENST00000504220 SMARCA2P51531 1590 aa5.76□□□□□ -1.49
PCDH11X-208ENST00000504220 BAZ1AQ9NRL2 1556 aaPredicted RBP5.76□□□□□ -1.49
PCDH11X-208ENST00000504220 NCAPD3P42695 1498 aa5.75□□□□□ -1.49
PCDH11X-208ENST00000504220 CHIC1Q5VXU3 224 aa5.73□□□□□ -1.49
PCDH11X-208ENST00000504220 GTF3C3Q9Y5Q9 886 aa5.72□□□□□ -1.49
PCDH11X-208ENST00000504220 ATAD2BQ9ULI0 1458 aa5.72□□□□□ -1.49
PCDH11X-208ENST00000504220 KLHL34Q8N239 644 aa5.71□□□□□ -1.5
PCDH11X-208ENST00000504220 SALL2Q9Y467 1007 aaPredicted RBP5.71□□□□□ -1.5
PCDH11X-208ENST00000504220 PCGF6Q9BYE7 350 aa5.7□□□□□ -1.5
PCDH11X-208ENST00000504220 MROH2BQ7Z745 1585 aa5.69□□□□□ -1.5
PCDH11X-208ENST00000504220 CENPBP07199 599 aaPredicted RBP5.68□□□□□ -1.5
PCDH11X-208ENST00000504220 NCBP3Q53F19 620 aaKnown RBP5.67□□□□□ -1.5
PCDH11X-208ENST00000504220 PRDM2Q13029 1718 aa5.67□□□□□ -1.5
PCDH11X-208ENST00000504220 PODXL2Q9NZ53 605 aa5.66□□□□□ -1.5
PCDH11X-208ENST00000504220 WIZO95785 1651 aa5.64□□□□□ -1.51
PCDH11X-208ENST00000504220 LAMC3Q9Y6N6 1575 aa5.64□□□□□ -1.51
PCDH11X-208ENST00000504220 BAZ1BQ9UIG0 1483 aaKnown RBP5.63□□□□□ -1.51
PCDH11X-208ENST00000504220 THOC2Q8NI27 1593 aaKnown RBP5.62□□□□□ -1.51
PCDH11X-208ENST00000504220 TOP2AP11388 1531 aaKnown RBP5.62□□□□□ -1.51
PCDH11X-208ENST00000504220 PKNOX2Q96KN3 472 aa5.61□□□□□ -1.51
PCDH11X-208ENST00000504220 TSHZ2Q9NRE2 1034 aa5.6□□□□□ -1.51
PCDH11X-208ENST00000504220 KIF21AQ7Z4S6 1674 aa5.6□□□□□ -1.51
PCDH11X-208ENST00000504220 CCDC136Q96JN2 1154 aa5.59□□□□□ -1.51
PCDH11X-208ENST00000504220 TIMELESSQ9UNS1 1208 aa5.59□□□□□ -1.51
PCDH11X-208ENST00000504220 CUX2O14529 1486 aa5.59□□□□□ -1.51
PCDH11X-208ENST00000504220 RSF1Q96T23 1441 aaPredicted RBP5.59□□□□□ -1.52
PCDH11X-208ENST00000504220 MSH5O43196 834 aa5.57□□□□□ -1.52
PCDH11X-208ENST00000504220 PLPPR3Q6T4P5 718 aa5.56□□□□□ -1.52
PCDH11X-208ENST00000504220 WDR62O43379 1518 aa5.55□□□□□ -1.52
PCDH11X-208ENST00000504220 FGD1P98174 961 aa5.54□□□□□ -1.52
PCDH11X-208ENST00000504220 NESP48681 1621 aa5.54□□□□□ -1.52
PCDH11X-208ENST00000504220 CFTRP13569 1480 aa5.53□□□□□ -1.52
PCDH11X-208ENST00000504220 RANGAP1P46060 587 aaPredicted RBP5.53□□□□□ -1.52
PCDH11X-208ENST00000504220 YTHDC1Q96MU7 727 aaKnown RBP5.53□□□□□ -1.52
PCDH11X-208ENST00000504220 ARXQ96QS3 562 aa5.52□□□□□ -1.53
PCDH11X-208ENST00000504220 CADPSQ9ULU8 1353 aa5.5□□□□□ -1.53
PCDH11X-208ENST00000504220 PDIA4P13667 645 aaKnown RBP5.5□□□□□ -1.53
PCDH11X-208ENST00000504220 AAMPQ13685 434 aa5.49□□□□□ -1.53
PCDH11X-208ENST00000504220 PDS5BQ9NTI5 1447 aa5.49□□□□□ -1.53
PCDH11X-208ENST00000504220 MRC2Q9UBG0 1479 aa5.49□□□□□ -1.53
PCDH11X-208ENST00000504220 BCL11BQ9C0K0 894 aaPredicted RBP5.48□□□□□ -1.53
PCDH11X-208ENST00000504220 CCDC88BA6NC98 1476 aa5.48□□□□□ -1.53
PCDH11X-208ENST00000504220 ERCC6Q03468 1493 aa5.47□□□□□ -1.53
PCDH11X-208ENST00000504220 CCER1Q8TC90 406 aaPredicted RBP5.47□□□□□ -1.53
PCDH11X-208ENST00000504220 WDR97A6NE52 1622 aa5.46□□□□□ -1.54
PCDH11X-208ENST00000504220 RTN4Q9NQC3 1192 aaKnown RBP5.46□□□□□ -1.54
PCDH11X-208ENST00000504220 CEP164Q9UPV0 1460 aa5.46□□□□□ -1.54
PCDH11X-208ENST00000504220 FANCD2Q9BXW9 1451 aa5.45□□□□□ -1.54
PCDH11X-208ENST00000504220 LOC105371045A0A1W2PR82 267 aa5.45□□□□□ -1.54
PCDH11X-208ENST00000504220 URB2Q14146 1524 aaKnown RBP5.45□□□□□ -1.54
PCDH11X-208ENST00000504220 RSPH6AQ9H0K4 717 aa5.44□□□□□ -1.54
PCDH11X-208ENST00000504220 DNMBPQ6XZF7 1577 aa5.43□□□□□ -1.54
PCDH11X-208ENST00000504220 PDE4CQ08493 712 aa5.43□□□□□ -1.54
PCDH11X-208ENST00000504220 TARBP1Q13395 1621 aaKnown RBP5.42□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms