RNA–Protein interactions for RNA: ENST00000497637.5

ACTN4-208, Transcript of actinin alpha 4, humanhuman

TSL 2

Gene ACTN4, Length 877 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN4-208ENST00000497637 ATP7AQ04656 1500 aa30.04■■■□□ 2.4
ACTN4-208ENST00000497637 SYCP2Q9BX26 1530 aa30.01■■■□□ 2.4
ACTN4-208ENST00000497637 PLEKHH2Q8IVE3 1493 aa30.01■■■□□ 2.4
ACTN4-208ENST00000497637 THEMISQ8N1K5 641 aaPredicted RBP29.99■■■□□ 2.39
ACTN4-208ENST00000497637 CDC42BPAQ5VT25 1732 aa29.99■■■□□ 2.39
ACTN4-208ENST00000497637 HRCP23327 699 aa29.98■■■□□ 2.39
ACTN4-208ENST00000497637 TNRQ92752 1358 aa29.98■■■□□ 2.39
ACTN4-208ENST00000497637 NEURL4Q96JN8 1562 aa29.97■■■□□ 2.39
ACTN4-208ENST00000497637 LRRIQ1Q96JM4 1722 aa29.96■■■□□ 2.39
ACTN4-208ENST00000497637 CFDP1Q9UEE9 299 aaPredicted RBP29.95■■■□□ 2.39
ACTN4-208ENST00000497637 GPATCH8Q9UKJ3 1502 aaKnown RBP29.95■■■□□ 2.38
ACTN4-208ENST00000497637 LRRC9Q6ZRR7 1453 aa29.94■■■□□ 2.38
ACTN4-208ENST00000497637 POLR1AO95602 1720 aaPredicted RBP29.94■■■□□ 2.38
ACTN4-208ENST00000497637 VWDEQ8N2E2 1590 aa29.93■■■□□ 2.38
ACTN4-208ENST00000497637 INO80Q9ULG1 1556 aaPredicted RBP29.93■■■□□ 2.38
ACTN4-208ENST00000497637 ALKQ9UM73 1620 aa29.92■■■□□ 2.38
ACTN4-208ENST00000497637 RGS17Q9UGC6 210 aaPredicted RBP29.91■■■□□ 2.38
ACTN4-208ENST00000497637 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP29.9■■■□□ 2.38
ACTN4-208ENST00000497637 NPHP4O75161 1426 aaPredicted RBP29.9■■■□□ 2.38
ACTN4-208ENST00000497637 MED14O60244 1454 aa29.9■■■□□ 2.38
ACTN4-208ENST00000497637 FBXO31Q5XUX0 539 aaPredicted RBP29.89■■■□□ 2.38
ACTN4-208ENST00000497637 SENP3Q9H4L4 574 aaPredicted RBP29.87■■■□□ 2.37
ACTN4-208ENST00000497637 PZPP20742 1482 aa29.85■■■□□ 2.37
ACTN4-208ENST00000497637 NLRP1Q9C000 1473 aa29.84■■■□□ 2.37
ACTN4-208ENST00000497637 ADGBQ8N7X0 1667 aa29.84■■■□□ 2.37
ACTN4-208ENST00000497637 FAM135AQ9P2D6 1515 aa29.83■■■□□ 2.37
ACTN4-208ENST00000497637 DEPDC5O75140 1603 aa29.82■■■□□ 2.36
ACTN4-208ENST00000497637 RRBP1Q9P2E9 1410 aaKnown RBP29.82■■■□□ 2.36
ACTN4-208ENST00000497637 DHX29Q7Z478 1369 aaKnown RBP29.82■■■□□ 2.36
ACTN4-208ENST00000497637 CCNB3Q8WWL7 1395 aa29.82■■■□□ 2.36
ACTN4-208ENST00000497637 MIA2Q96PC5 1412 aa29.81■■■□□ 2.36
ACTN4-208ENST00000497637 LRRC7Q96NW7 1537 aa29.81■■■□□ 2.36
ACTN4-208ENST00000497637 RTEL1-TNFRSF6BF6WH68 1400 aa29.79■■■□□ 2.36
ACTN4-208ENST00000497637 WASHC2CQ9Y4E1 1318 aa29.79■■■□□ 2.36
ACTN4-208ENST00000497637 KIF3BO15066 747 aa29.78■■■□□ 2.36
ACTN4-208ENST00000497637 UGGT1Q9NYU2 1555 aa29.77■■■□□ 2.36
ACTN4-208ENST00000497637 RNF17Q9BXT8 1623 aaKnown RBP29.77■■■□□ 2.36
ACTN4-208ENST00000497637 KDM5DQ9BY66 1539 aa29.75■■■□□ 2.35
ACTN4-208ENST00000497637 SYNMO15061 1565 aa29.72■■■□□ 2.35
ACTN4-208ENST00000497637 IQGAP1P46940 1657 aa29.71■■■□□ 2.35
ACTN4-208ENST00000497637 POTEAQ6S8J7 498 aa29.7■■■□□ 2.35
ACTN4-208ENST00000497637 MTUS2Q5JR59 1369 aa29.69■■■□□ 2.34
ACTN4-208ENST00000497637 MBD5Q9P267 1494 aa29.67■■■□□ 2.34
ACTN4-208ENST00000497637 ZNF644Q9H582 1327 aaPredicted RBP29.66■■■□□ 2.34
ACTN4-208ENST00000497637 ZEB1P37275 1124 aaPredicted RBP29.64■■■□□ 2.34
ACTN4-208ENST00000497637 FAM135BQ49AJ0 1406 aa29.63■■■□□ 2.33
ACTN4-208ENST00000497637 EHBP1L1Q8N3D4 1523 aa29.63■■■□□ 2.33
ACTN4-208ENST00000497637 RSPH4AQ5TD94 716 aa29.61■■■□□ 2.33
ACTN4-208ENST00000497637 STRCP1A6NGW2 1772 aa29.61■■■□□ 2.33
ACTN4-208ENST00000497637 NCOA2Q15596 1464 aa29.54■■■□□ 2.32
ACTN4-208ENST00000497637 SCAF11Q99590 1463 aaKnown RBP29.51■■■□□ 2.31
ACTN4-208ENST00000497637 CCDC141Q6ZP82 1450 aa29.5■■■□□ 2.31
ACTN4-208ENST00000497637 TXNDC2Q86VQ3 553 aa29.48■■■□□ 2.31
ACTN4-208ENST00000497637 CCER1Q8TC90 406 aaPredicted RBP29.47■■■□□ 2.31
ACTN4-208ENST00000497637 FGD6Q6ZV73 1430 aa29.46■■■□□ 2.31
ACTN4-208ENST00000497637 EID1Q9Y6B2 187 aa29.46■■■□□ 2.31
ACTN4-208ENST00000497637 ZC3H13Q5T200 1668 aaKnown RBP29.46■■■□□ 2.31
ACTN4-208ENST00000497637 MYOM3Q5VTT5 1437 aa29.45■■■□□ 2.31
ACTN4-208ENST00000497637 TSPY4P0CV99 314 aa29.44■■■□□ 2.3
ACTN4-208ENST00000497637 TSPY10P0CW01 314 aa29.44■■■□□ 2.3
ACTN4-208ENST00000497637 ERVK-7P63135 1459 aa29.43■■■□□ 2.3
ACTN4-208ENST00000497637 LTKP29376 864 aa29.43■■■□□ 2.3
ACTN4-208ENST00000497637 FAM50AQ14320 339 aaKnown RBP29.42■■■□□ 2.3
ACTN4-208ENST00000497637 ABCC3O15438 1527 aa29.4■■■□□ 2.3
ACTN4-208ENST00000497637 ARHGAP23Q9P227 1491 aa29.39■■■□□ 2.3
ACTN4-208ENST00000497637 TMEM94Q12767 1356 aa29.39■■■□□ 2.29
ACTN4-208ENST00000497637 SLIT1O75093 1534 aa29.38■■■□□ 2.29
ACTN4-208ENST00000497637 UPF1Q92900 1129 aaKnown RBP eCLIP29.37■■■□□ 2.295e-27■■■■■ 65.8
ACTN4-208ENST00000497637 XIRP1Q702N8 1843 aaKnown RBP29.34■■■□□ 2.29
ACTN4-208ENST00000497637 KCNA6P17658 529 aa29.34■■■□□ 2.29
ACTN4-208ENST00000497637 JCADQ9P266 1359 aa29.34■■■□□ 2.29
ACTN4-208ENST00000497637 UBR1Q8IWV7 1749 aa29.34■■■□□ 2.29
ACTN4-208ENST00000497637 CAMSAP2Q08AD1 1489 aa29.32■■■□□ 2.28
ACTN4-208ENST00000497637 ITGAEP38570 1179 aa29.32■■■□□ 2.28
ACTN4-208ENST00000497637 PROSER2Q86WR7 435 aaPredicted RBP29.32■■■□□ 2.28
ACTN4-208ENST00000497637 ROBO1Q9Y6N7 1651 aa29.31■■■□□ 2.28
ACTN4-208ENST00000497637 ZNF772Q68DY9 489 aaPredicted RBP29.3■■■□□ 2.28
ACTN4-208ENST00000497637 SETD1AO15047 1707 aaKnown RBP29.3■■■□□ 2.28
ACTN4-208ENST00000497637 TMEM2Q9UHN6 1383 aa29.26■■■□□ 2.28
ACTN4-208ENST00000497637 SLAIN2Q9P270 581 aa29.26■■■□□ 2.27
ACTN4-208ENST00000497637 ARHGEF5Q12774 1597 aa29.26■■■□□ 2.27
ACTN4-208ENST00000497637 PTPN23Q9H3S7 1636 aa29.24■■■□□ 2.27
ACTN4-208ENST00000497637 STAG3Q9UJ98 1225 aa29.24■■■□□ 2.27
ACTN4-208ENST00000497637 MSH6P52701 1360 aa29.24■■■□□ 2.27
ACTN4-208ENST00000497637 SPATA31A6Q5VVP1 1343 aa29.22■■■□□ 2.27
ACTN4-208ENST00000497637 ARHGAP31Q2M1Z3 1444 aa29.21■■■□□ 2.27
ACTN4-208ENST00000497637 SETD5Q9C0A6 1442 aa29.21■■■□□ 2.27
ACTN4-208ENST00000497637 MEX3CQ5U5Q3 659 aaKnown RBP29.2■■■□□ 2.26
ACTN4-208ENST00000497637 TRIM52Q96A61 297 aa29.2■■■□□ 2.26
ACTN4-208ENST00000497637 EIF2AK4Q9P2K8 1649 aaKnown RBP29.2■■■□□ 2.26
ACTN4-208ENST00000497637 SRCAPQ6ZRS2 3230 aa29.19■■■□□ 2.26
ACTN4-208ENST00000497637 PRDM15P57071 1507 aaPredicted RBP29.19■■■□□ 2.26
ACTN4-208ENST00000497637 NKTRP30414 1462 aaKnown RBP29.17■■■□□ 2.26
ACTN4-208ENST00000497637 RBM33Q96EV2 1170 aaKnown RBP29.17■■■□□ 2.26
ACTN4-208ENST00000497637 RXRBP28702 533 aa29.16■■■□□ 2.26
ACTN4-208ENST00000497637 SLC26A8Q96RN1 970 aa29.16■■■□□ 2.26
ACTN4-208ENST00000497637 RAB3GAP2Q9H2M9 1393 aa29.14■■■□□ 2.26
ACTN4-208ENST00000497637 PHLPP1O60346 1717 aa29.14■■■□□ 2.26
ACTN4-208ENST00000497637 CFAP65Q6ZU64 1925 aaKnown RBP29.13■■■□□ 2.25
ACTN4-208ENST00000497637 DHX57Q6P158 1386 aaKnown RBP29.13■■■□□ 2.25
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms