RNA–Protein interactions for RNA: ENST00000497637.5

ACTN4-208, Transcript of actinin alpha 4, humanhuman

TSL 2

Gene ACTN4, Length 877 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN4-208ENST00000497637 NISCHQ9Y2I1 1504 aa46.74■■■■■ 5.07
ACTN4-208ENST00000497637 ABCC9O60706 1549 aa43.41■■■■■ 4.54
ACTN4-208ENST00000497637 CCDC180Q9P1Z9 1646 aa42.35■■■■■ 4.37
ACTN4-208ENST00000497637 DNAJC5BQ9UF47 199 aa41.7■■■■■ 4.27
ACTN4-208ENST00000497637 RB1CC1Q8TDY2 1594 aa40.91■■■■■ 4.14
ACTN4-208ENST00000497637 NACADO15069 1562 aa40.4■■■■■ 4.06
ACTN4-208ENST00000497637 PABPN1Q86U42 306 aaKnown RBP eCLIP40.3■■■■■ 4.045e-13■□□□□ 8.6
ACTN4-208ENST00000497637 DCAF8L2P0C7V8 631 aa40■■■■□ 3.99
ACTN4-208ENST00000497637 UNC13AQ9UPW8 1703 aa39.71■■■■□ 3.95
ACTN4-208ENST00000497637 BICRAQ9NZM4 1560 aa39.64■■■■□ 3.94
ACTN4-208ENST00000497637 MYO15BQ96JP2 1530 aa39.55■■■■□ 3.92
ACTN4-208ENST00000497637 CECR2Q9BXF3 1484 aa39.29■■■■□ 3.88
ACTN4-208ENST00000497637 SHROOM4Q9ULL8 1493 aa39.23■■■■□ 3.87
ACTN4-208ENST00000497637 DNAJC5Q9H3Z4 198 aa39.22■■■■□ 3.87
ACTN4-208ENST00000497637 CC2D2AQ9P2K1 1620 aa39.13■■■■□ 3.85
ACTN4-208ENST00000497637 EIF4G1Q04637 1599 aaKnown RBP38.82■■■■□ 3.8
ACTN4-208ENST00000497637 DCAF1Q9Y4B6 1507 aa38.61■■■■□ 3.77
ACTN4-208ENST00000497637 ZCCHC6Q5VYS8 1495 aaKnown RBP38.48■■■■□ 3.75
ACTN4-208ENST00000497637 SCRIBQ14160 1630 aa38.45■■■■□ 3.75
ACTN4-208ENST00000497637 CUX2O14529 1486 aa37.97■■■■□ 3.67
ACTN4-208ENST00000497637 ERCC6Q03468 1493 aa37.64■■■■□ 3.62
ACTN4-208ENST00000497637 NCAPD3P42695 1498 aa37.35■■■■□ 3.57
ACTN4-208ENST00000497637 ATAD2BQ9ULI0 1458 aa37.02■■■■□ 3.52
ACTN4-208ENST00000497637 TRIM41Q8WV44 630 aa36.97■■■■□ 3.51
ACTN4-208ENST00000497637 NESP48681 1621 aa36.94■■■■□ 3.5
ACTN4-208ENST00000497637 HMGXB3Q12766 1538 aa36.9■■■■□ 3.5
ACTN4-208ENST00000497637 SMARCA2P51531 1590 aa36.89■■■■□ 3.5
ACTN4-208ENST00000497637 THOC2Q8NI27 1593 aaKnown RBP36.75■■■■□ 3.47
ACTN4-208ENST00000497637 SMARCA4P51532 1647 aa36.62■■■■□ 3.45
ACTN4-208ENST00000497637 BAZ1BQ9UIG0 1483 aaKnown RBP36.61■■■■□ 3.45
ACTN4-208ENST00000497637 LAMC3Q9Y6N6 1575 aa36.61■■■■□ 3.45
ACTN4-208ENST00000497637 PDS5BQ9NTI5 1447 aa36.55■■■■□ 3.44
ACTN4-208ENST00000497637 BAZ1AQ9NRL2 1556 aaPredicted RBP36.38■■■■□ 3.41
ACTN4-208ENST00000497637 PEG3Q9GZU2 1588 aa36.34■■■■□ 3.41
ACTN4-208ENST00000497637 KIF21AQ7Z4S6 1674 aa36.33■■■■□ 3.41
ACTN4-208ENST00000497637 MRC2Q9UBG0 1479 aa36.2■■■■□ 3.39
ACTN4-208ENST00000497637 CADPSQ9ULU8 1353 aa36.17■■■■□ 3.38
ACTN4-208ENST00000497637 OSCARQ8IYS5 282 aa36.15■■■■□ 3.38
ACTN4-208ENST00000497637 WDR62O43379 1518 aa36.1■■■■□ 3.37
ACTN4-208ENST00000497637 MROH2BQ7Z745 1585 aa35.94■■■■□ 3.34
ACTN4-208ENST00000497637 CEP164Q9UPV0 1460 aa35.84■■■■□ 3.33
ACTN4-208ENST00000497637 FANCD2Q9BXW9 1451 aa35.7■■■■□ 3.31
ACTN4-208ENST00000497637 RIMBP3CA6NJZ7 1639 aa35.54■■■■□ 3.28
ACTN4-208ENST00000497637 RIMBP3BA6NNM3 1639 aa35.54■■■■□ 3.28
ACTN4-208ENST00000497637 RIMBP3Q9UFD9 1639 aa35.54■■■■□ 3.28
ACTN4-208ENST00000497637 CFTRP13569 1480 aa35.5■■■■□ 3.27
ACTN4-208ENST00000497637 URB2Q14146 1524 aaKnown RBP35.41■■■■□ 3.26
ACTN4-208ENST00000497637 ARHGEF11O15085 1522 aa35.4■■■■□ 3.26
ACTN4-208ENST00000497637 WIZO95785 1651 aa35.38■■■■□ 3.25
ACTN4-208ENST00000497637 CYB5RLQ6IPT4 315 aa35.31■■■■□ 3.24
ACTN4-208ENST00000497637 TRHP20396 242 aaPredicted RBP35.27■■■■□ 3.24
ACTN4-208ENST00000497637 IFT140Q96RY7 1462 aa35.2■■■■□ 3.23
ACTN4-208ENST00000497637 ZNF608Q9ULD9 1512 aaPredicted RBP35.14■■■■□ 3.22
ACTN4-208ENST00000497637 AEBP2Q6ZN18 517 aaPredicted RBP35.09■■■■□ 3.21
ACTN4-208ENST00000497637 TOP2AP11388 1531 aaKnown RBP34.96■■■■□ 3.19
ACTN4-208ENST00000497637 ARAP1Q96P48 1450 aa34.96■■■■□ 3.19
ACTN4-208ENST00000497637 RSF1Q96T23 1441 aaPredicted RBP34.93■■■■□ 3.18
ACTN4-208ENST00000497637 TOPBP1Q92547 1522 aa34.87■■■■□ 3.17
ACTN4-208ENST00000497637 ABCC8Q09428 1581 aa34.87■■■■□ 3.17
ACTN4-208ENST00000497637 EIF4G3O43432 1585 aaKnown RBP34.84■■■■□ 3.17
ACTN4-208ENST00000497637 PRDM2Q13029 1718 aa34.82■■■■□ 3.16
ACTN4-208ENST00000497637 FBLN2P98095 1184 aa34.81■■■■□ 3.16
ACTN4-208ENST00000497637 SUPT5HO00267 1087 aaKnown RBP34.76■■■■□ 3.16
ACTN4-208ENST00000497637 AQRO60306 1485 aaKnown RBP eCLIP34.74■■■■□ 3.153e-8■■■■■ 35.4
ACTN4-208ENST00000497637 CHD1O14646 1710 aa34.72■■■■□ 3.15
ACTN4-208ENST00000497637 DNMBPQ6XZF7 1577 aa34.63■■■■□ 3.13
ACTN4-208ENST00000497637 CCDC88BA6NC98 1476 aa34.6■■■■□ 3.13
ACTN4-208ENST00000497637 TARBP1Q13395 1621 aaKnown RBP34.59■■■■□ 3.13
ACTN4-208ENST00000497637 POLA1P09884 1462 aaPredicted RBP34.45■■■■□ 3.1
ACTN4-208ENST00000497637 CHMP7Q8WUX9 453 aaPredicted RBP34.43■■■■□ 3.1
ACTN4-208ENST00000497637 CLASP1Q7Z460 1538 aa34.41■■■■□ 3.1
ACTN4-208ENST00000497637 TDRD9Q8NDG6 1382 aaKnown RBP34.38■■■■□ 3.09
ACTN4-208ENST00000497637 SYNJ1O43426 1573 aa34.36■■■■□ 3.09
ACTN4-208ENST00000497637 SOGA1O94964 1423 aa34.35■■■■□ 3.09
ACTN4-208ENST00000497637 SNAPC4Q5SXM2 1469 aa34.33■■■■□ 3.09
ACTN4-208ENST00000497637 RAD54L2Q9Y4B4 1467 aa34.31■■■■□ 3.08
ACTN4-208ENST00000497637 MAGI1Q96QZ7 1491 aaPredicted RBP34.28■■■■□ 3.08
ACTN4-208ENST00000497637 WDR97A6NE52 1622 aa34.27■■■■□ 3.08
ACTN4-208ENST00000497637 GAPVD1Q14C86 1478 aa34.2■■■■□ 3.07
ACTN4-208ENST00000497637 SYNJ2O15056 1496 aa34.17■■■■□ 3.06
ACTN4-208ENST00000497637 GRIN2BQ13224 1484 aa34.17■■■■□ 3.06
ACTN4-208ENST00000497637 FGD5Q6ZNL6 1462 aa34.06■■■■□ 3.04
ACTN4-208ENST00000497637 CUX1P39880 1505 aa33.84■■■■□ 3.01
ACTN4-208ENST00000497637 PBRM1Q86U86 1689 aa33.74■■■□□ 2.99
ACTN4-208ENST00000497637 ERCC6L2Q5T890 1561 aa33.72■■■□□ 2.99
ACTN4-208ENST00000497637 GRIN2AQ12879 1464 aa33.68■■■□□ 2.98
ACTN4-208ENST00000497637 ABCA10Q8WWZ4 1543 aa33.67■■■□□ 2.98
ACTN4-208ENST00000497637 CEP170Q5SW79 1584 aa33.65■■■□□ 2.98
ACTN4-208ENST00000497637 NUP160Q12769 1436 aa33.63■■■□□ 2.97
ACTN4-208ENST00000497637 ABCA5Q8WWZ7 1642 aa33.61■■■□□ 2.97
ACTN4-208ENST00000497637 ILDR1Q86SU0 546 aaPredicted RBP33.59■■■□□ 2.97
ACTN4-208ENST00000497637 KIF13AQ9H1H9 1805 aa33.56■■■□□ 2.96
ACTN4-208ENST00000497637 FAM69CQ0P6D2 419 aa33.53■■■□□ 2.96
ACTN4-208ENST00000497637 SHROOM2Q13796 1616 aa33.51■■■□□ 2.96
ACTN4-208ENST00000497637 KDM4FA0A1W2PPD8 638 aa33.49■■■□□ 2.95
ACTN4-208ENST00000497637 NPM1P06748 294 aaKnown RBP eCLIP33.47■■■□□ 2.95
ACTN4-208ENST00000497637 ABCC10Q5T3U5 1492 aa33.46■■■□□ 2.95
ACTN4-208ENST00000497637 FHAD1B1AJZ9 1412 aa33.45■■■□□ 2.94
ACTN4-208ENST00000497637 ADAMTS12P58397 1594 aa33.44■■■□□ 2.94
ACTN4-208ENST00000497637 CHIC1Q5VXU3 224 aa33.42■■■□□ 2.94
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms