RNA–Protein interactions for RNA: ENST00000494546.1

CBX4-203, Transcript of chromobox 4, humanhuman

TSL 3

Gene CBX4, Length 432 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4-203ENST00000494546 KDM5DQ9BY66 1539 aa51.45■■■■■ 5.83
CBX4-203ENST00000494546 FAM135AQ9P2D6 1515 aa51.42■■■■■ 5.82
CBX4-203ENST00000494546 RRP7BPQ9NSQ0 103 aa51.41■■■■■ 5.82
CBX4-203ENST00000494546 DUOX2Q9NRD8 1548 aa51.41■■■■■ 5.82
CBX4-203ENST00000494546 KIF15Q9NS87 1388 aa51.41■■■■■ 5.82
CBX4-203ENST00000494546 FAM50AQ14320 339 aaKnown RBP51.4■■■■■ 5.82
CBX4-203ENST00000494546 EIF2AK4Q9P2K8 1649 aaKnown RBP51.38■■■■■ 5.82
CBX4-203ENST00000494546 RNF17Q9BXT8 1623 aaKnown RBP51.36■■■■■ 5.81
CBX4-203ENST00000494546 CHIC2Q9UKJ5 165 aa51.36■■■■■ 5.81
CBX4-203ENST00000494546 STRCQ7RTU9 1775 aa51.3■■■■■ 5.8
CBX4-203ENST00000494546 MYO3AQ8NEV4 1616 aa51.3■■■■■ 5.8
CBX4-203ENST00000494546 FBXO31Q5XUX0 539 aaPredicted RBP51.29■■■■■ 5.8
CBX4-203ENST00000494546 ILDR1Q86SU0 546 aaPredicted RBP51.29■■■■■ 5.8
CBX4-203ENST00000494546 PPARGC1BQ86YN6 1023 aaKnown RBP51.28■■■■■ 5.8
CBX4-203ENST00000494546 PZPP20742 1482 aa51.28■■■■■ 5.8
CBX4-203ENST00000494546 ANKRD30AQ9BXX3 1397 aa51.27■■■■■ 5.8
CBX4-203ENST00000494546 DMRT2Q9Y5R5 561 aa51.26■■■■■ 5.8
CBX4-203ENST00000494546 ERBINQ96RT1 1412 aa51.24■■■■■ 5.79
CBX4-203ENST00000494546 ABCC3O15438 1527 aa51.22■■■■■ 5.79
CBX4-203ENST00000494546 MROH1Q8NDA8 1641 aa51.21■■■■■ 5.79
CBX4-203ENST00000494546 CEP170BQ9Y4F5 1589 aaPredicted RBP51.21■■■■■ 5.79
CBX4-203ENST00000494546 CAMSAP1Q5T5Y3 1602 aa51.2■■■■■ 5.79
CBX4-203ENST00000494546 TNRQ92752 1358 aa51.19■■■■■ 5.79
CBX4-203ENST00000494546 ZNF142P52746 1687 aaPredicted RBP51.19■■■■■ 5.79
CBX4-203ENST00000494546 NCOA1Q15788 1441 aa51.19■■■■■ 5.78
CBX4-203ENST00000494546 ZC3H13Q5T200 1668 aaKnown RBP51.17■■■■■ 5.78
CBX4-203ENST00000494546 A2ML1A8K2U0 1454 aa51.1■■■■■ 5.77
CBX4-203ENST00000494546 GRWD1Q9BQ67 446 aaKnown RBP eCLIP51.1■■■■■ 5.772e-6■■□□□ 12.9
CBX4-203ENST00000494546 ADGRL2O95490 1459 aa51.1■■■■■ 5.77
CBX4-203ENST00000494546 CEP152O94986 1710 aa51.07■■■■■ 5.77
CBX4-203ENST00000494546 PTPRTO14522 1441 aa51.07■■■■■ 5.77
CBX4-203ENST00000494546 PRDM15P57071 1507 aaPredicted RBP51.06■■■■■ 5.76
CBX4-203ENST00000494546 NCKAP5LQ9HCH0 1330 aa51.03■■■■■ 5.76
CBX4-203ENST00000494546 PLA2R1Q13018 1463 aa51.01■■■■■ 5.76
CBX4-203ENST00000494546 DEPDC5O75140 1603 aa50.98■■■■■ 5.75
CBX4-203ENST00000494546 KANK1Q14678 1352 aa50.97■■■■■ 5.75
CBX4-203ENST00000494546 FBXO41Q8TF61 875 aa50.95■■■■■ 5.75
CBX4-203ENST00000494546 PKD2Q13563 968 aa50.94■■■■■ 5.75
CBX4-203ENST00000494546 ERVK-7P63135 1459 aa50.94■■■■■ 5.75
CBX4-203ENST00000494546 NLRP1Q9C000 1473 aa50.94■■■■■ 5.75
CBX4-203ENST00000494546 SPATA31D1Q6ZQQ2 1576 aa50.93■■■■■ 5.74
CBX4-203ENST00000494546 CERKQ8TCT0 537 aa50.92■■■■■ 5.74
CBX4-203ENST00000494546 ANKRD50Q9ULJ7 1429 aa50.89■■■■■ 5.74
CBX4-203ENST00000494546 ITGAEP38570 1179 aa50.87■■■■■ 5.73
CBX4-203ENST00000494546 ARHGAP31Q2M1Z3 1444 aa50.85■■■■■ 5.73
CBX4-203ENST00000494546 UGGT1Q9NYU2 1555 aa50.82■■■■■ 5.73
CBX4-203ENST00000494546 CFAP65Q6ZU64 1925 aaKnown RBP50.82■■■■■ 5.73
CBX4-203ENST00000494546 THEMISQ8N1K5 641 aaPredicted RBP50.81■■■■■ 5.72
CBX4-203ENST00000494546 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP50.81■■■■■ 5.722e-8■■■■■ 31.5
CBX4-203ENST00000494546 VWDEQ8N2E2 1590 aa50.78■■■■■ 5.72
CBX4-203ENST00000494546 ROCK1Q13464 1354 aa50.78■■■■■ 5.72
CBX4-203ENST00000494546 LMTK2Q8IWU2 1503 aa50.77■■■■■ 5.72
CBX4-203ENST00000494546 ANKLE2Q86XL3 938 aa50.7■■■■■ 5.71
CBX4-203ENST00000494546 POLR1AO95602 1720 aaPredicted RBP50.66■■■■■ 5.7
CBX4-203ENST00000494546 LTBP4Q8N2S1 1624 aa50.65■■■■■ 5.7
CBX4-203ENST00000494546 RRBP1Q9P2E9 1410 aaKnown RBP50.64■■■■■ 5.7
CBX4-203ENST00000494546 EFCAB6Q5THR3 1501 aa50.62■■■■■ 5.69
CBX4-203ENST00000494546 NEURL4Q96JN8 1562 aa50.62■■■■■ 5.69
CBX4-203ENST00000494546 ZNF335Q9H4Z2 1342 aaPredicted RBP50.62■■■■■ 5.69
CBX4-203ENST00000494546 UBR1Q8IWV7 1749 aa50.55■■■■■ 5.68
CBX4-203ENST00000494546 UNC13BO14795 1591 aa50.55■■■■■ 5.68
CBX4-203ENST00000494546 NPHP4O75161 1426 aaPredicted RBP50.49■■■■■ 5.67
CBX4-203ENST00000494546 NOS1P29475 1434 aa50.48■■■■■ 5.67
CBX4-203ENST00000494546 STAG3Q9UJ98 1225 aa50.48■■■■■ 5.67
CBX4-203ENST00000494546 TET3O43151 1660 aa50.47■■■■■ 5.67
CBX4-203ENST00000494546 PIK3C2BO00750 1634 aa50.47■■■■■ 5.67
CBX4-203ENST00000494546 SYNMO15061 1565 aa50.46■■■■■ 5.67
CBX4-203ENST00000494546 MED14O60244 1454 aa50.46■■■■■ 5.67
CBX4-203ENST00000494546 IDI1Q13907 227 aa50.45■■■■■ 5.67
CBX4-203ENST00000494546 RPRD2Q5VT52 1461 aaKnown RBP50.45■■■■■ 5.67
CBX4-203ENST00000494546 NUP155O75694 1391 aa50.39■■■■■ 5.66
CBX4-203ENST00000494546 GCC2Q8IWJ2 1684 aa50.37■■■■■ 5.65
CBX4-203ENST00000494546 IQGAP1P46940 1657 aa50.36■■■■■ 5.65
CBX4-203ENST00000494546 ARHGAP23Q9P227 1491 aa50.36■■■■■ 5.65
CBX4-203ENST00000494546 TXNDC2Q86VQ3 553 aa50.36■■■■■ 5.65
CBX4-203ENST00000494546 SLIT1O75093 1534 aa50.36■■■■■ 5.65
CBX4-203ENST00000494546 IQSEC2Q5JU85 1478 aa50.35■■■■■ 5.65
CBX4-203ENST00000494546 SCAF11Q99590 1463 aaKnown RBP50.35■■■■■ 5.65
CBX4-203ENST00000494546 SLC52A1Q9NWF4 448 aa50.35■■■■■ 5.65
CBX4-203ENST00000494546 IQGAP3Q86VI3 1631 aa50.35■■■■■ 5.65
CBX4-203ENST00000494546 LTKP29376 864 aa50.33■■■■■ 5.65
CBX4-203ENST00000494546 EID1Q9Y6B2 187 aa50.32■■■■■ 5.65
CBX4-203ENST00000494546 TMEM2Q9UHN6 1383 aa50.3■■■■■ 5.64
CBX4-203ENST00000494546 KDM5AP29375 1690 aaKnown RBP50.27■■■■■ 5.64
CBX4-203ENST00000494546 E9PCH4 1651 aa50.26■■■■■ 5.64
CBX4-203ENST00000494546 ADGRB3O60242 1522 aa50.24■■■■■ 5.63
CBX4-203ENST00000494546 NAIPQ13075 1403 aa50.23■■■■■ 5.63
CBX4-203ENST00000494546 CPS1P31327 1500 aa50.2■■■■■ 5.63
CBX4-203ENST00000494546 HFM1A2PYH4 1435 aa50.1■■■■■ 5.61
CBX4-203ENST00000494546 UBAP1LF5GYI3 381 aa50.09■■■■■ 5.61
CBX4-203ENST00000494546 CHGAP10645 457 aaKnown RBP50.08■■■■■ 5.61
CBX4-203ENST00000494546 TMEM131LA2VDJ0 1609 aa50.02■■■■■ 5.6
CBX4-203ENST00000494546 MYO5BQ9ULV0 1848 aa50■■■■■ 5.59
CBX4-203ENST00000494546 TRIM52Q96A61 297 aa49.99■■■■■ 5.59
CBX4-203ENST00000494546 STRCP1A6NGW2 1772 aa49.99■■■■■ 5.59
CBX4-203ENST00000494546 RIMS2Q9UQ26 1411 aa49.96■■■■■ 5.59
CBX4-203ENST00000494546 BCANQ96GW7 911 aa49.95■■■■■ 5.59
CBX4-203ENST00000494546 ZFYVE9O95405 1425 aa49.94■■■■■ 5.59
CBX4-203ENST00000494546 PPP1R15AO75807 674 aaPredicted RBP49.93■■■■■ 5.58
CBX4-203ENST00000494546 HDGFP51858 240 aaKnown RBP49.93■■■■■ 5.58
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms