RNA–Protein interactions for RNA: ENST00000489853.1

SNRNP40-206, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 2

Gene SNRNP40, Length 1,928 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-206ENST00000489853 GOLGA3Q08378 1498 aa6.41□□□□□ -1.38
SNRNP40-206ENST00000489853 MMRN1Q13201 1228 aa6.4□□□□□ -1.38
SNRNP40-206ENST00000489853 THOC2Q8NI27 1593 aaKnown RBP6.4□□□□□ -1.38
SNRNP40-206ENST00000489853 VPS8Q8N3P4 1428 aa6.4□□□□□ -1.38
SNRNP40-206ENST00000489853 TESPA1A2RU30 521 aaPredicted RBP6.39□□□□□ -1.39
SNRNP40-206ENST00000489853 PDAP1Q13442 181 aaKnown RBP6.39□□□□□ -1.39
SNRNP40-206ENST00000489853 CLIP1P30622 1438 aa6.39□□□□□ -1.39
SNRNP40-206ENST00000489853 E2F4Q16254 413 aa6.38□□□□□ -1.39
SNRNP40-206ENST00000489853 ARHGEF1Q92888 912 aaKnown RBP6.38□□□□□ -1.39
SNRNP40-206ENST00000489853 RRP9O43818 475 aaKnown RBP6.38□□□□□ -1.39
SNRNP40-206ENST00000489853 ZNF467Q7Z7K2 595 aaPredicted RBP6.38□□□□□ -1.39
SNRNP40-206ENST00000489853 SOGA1O94964 1423 aa6.38□□□□□ -1.39
SNRNP40-206ENST00000489853 CCDC88BA6NC98 1476 aa6.37□□□□□ -1.39
SNRNP40-206ENST00000489853 ST18O60284 1047 aa6.37□□□□□ -1.39
SNRNP40-206ENST00000489853 PSEN1P49768 467 aa6.37□□□□□ -1.39
SNRNP40-206ENST00000489853 OCEL1Q9H607 264 aa6.37□□□□□ -1.39
SNRNP40-206ENST00000489853 CEP164Q9UPV0 1460 aa6.37□□□□□ -1.39
SNRNP40-206ENST00000489853 EFCAB3Q8N7B9 438 aa6.37□□□□□ -1.39
SNRNP40-206ENST00000489853 GPBP1L1Q9HC44 474 aaPredicted RBP6.37□□□□□ -1.39
SNRNP40-206ENST00000489853 PHF8Q9UPP1 1060 aa6.37□□□□□ -1.39
SNRNP40-206ENST00000489853 LAS1LQ9Y4W2 734 aaKnown RBP6.37□□□□□ -1.39
SNRNP40-206ENST00000489853 ABCC8Q09428 1581 aa6.36□□□□□ -1.39
SNRNP40-206ENST00000489853 NCKAP5LQ9HCH0 1330 aa6.36□□□□□ -1.39
SNRNP40-206ENST00000489853 FBXO22Q8NEZ5 403 aa6.36□□□□□ -1.39
SNRNP40-206ENST00000489853 HSP90AA2PQ14568 343 aaPredicted RBP6.35□□□□□ -1.39
SNRNP40-206ENST00000489853 HMGXB3Q12766 1538 aa6.35□□□□□ -1.39
SNRNP40-206ENST00000489853 ZMYND10O75800 440 aa6.35□□□□□ -1.39
SNRNP40-206ENST00000489853 FRAT1Q92837 279 aaPredicted RBP6.35□□□□□ -1.39
SNRNP40-206ENST00000489853 RRBP1Q9P2E9 1410 aaKnown RBP6.34□□□□□ -1.39
SNRNP40-206ENST00000489853 WDR97A6NE52 1622 aa6.34□□□□□ -1.39
SNRNP40-206ENST00000489853 SMARCA4P51532 1647 aa6.34□□□□□ -1.39
SNRNP40-206ENST00000489853 TCERG1O14776 1098 aaKnown RBP6.34□□□□□ -1.39
SNRNP40-206ENST00000489853 CABP2Q9NPB3 220 aa6.34□□□□□ -1.39
SNRNP40-206ENST00000489853 DDRGK1Q96HY6 314 aa6.33□□□□□ -1.4
SNRNP40-206ENST00000489853 ZBED9Q6R2W3 1325 aa6.33□□□□□ -1.4
SNRNP40-206ENST00000489853 KIF21AQ7Z4S6 1674 aa6.33□□□□□ -1.4
SNRNP40-206ENST00000489853 HSP90AA1P07900 732 aaKnown RBP6.33□□□□□ -1.4
SNRNP40-206ENST00000489853 NFKBIBQ15653 356 aa6.33□□□□□ -1.4
SNRNP40-206ENST00000489853 LARP6Q9BRS8 491 aaKnown RBP6.33□□□□□ -1.4
SNRNP40-206ENST00000489853 RNF123Q5XPI4 1314 aa6.32□□□□□ -1.4
SNRNP40-206ENST00000489853 MS4A1P11836 297 aa6.32□□□□□ -1.4
SNRNP40-206ENST00000489853 SPNS2Q8IVW8 549 aa6.32□□□□□ -1.4
SNRNP40-206ENST00000489853 PDCD7Q8N8D1 485 aaKnown RBP6.32□□□□□ -1.4
SNRNP40-206ENST00000489853 MAPKBP1O60336 1514 aa6.32□□□□□ -1.4
SNRNP40-206ENST00000489853 SMARCA2P51531 1590 aa6.32□□□□□ -1.4
SNRNP40-206ENST00000489853 FGD1P98174 961 aa6.31□□□□□ -1.4
SNRNP40-206ENST00000489853 RBM26Q5T8P6 1007 aaKnown RBP6.31□□□□□ -1.4
SNRNP40-206ENST00000489853 PDE4AP27815 886 aa6.31□□□□□ -1.4
SNRNP40-206ENST00000489853 RBM10P98175 930 aaKnown RBP6.31□□□□□ -1.4
SNRNP40-206ENST00000489853 EIF2AK3Q9NZJ5 1116 aaKnown RBP6.31□□□□□ -1.4
SNRNP40-206ENST00000489853 RUSC2Q8N2Y8 1516 aa6.3□□□□□ -1.4
SNRNP40-206ENST00000489853 MLLT3P42568 568 aaPredicted RBP6.3□□□□□ -1.4
SNRNP40-206ENST00000489853 NPM2Q86SE8 214 aaKnown RBP6.3□□□□□ -1.4
SNRNP40-206ENST00000489853 BACH2Q9BYV9 841 aa6.3□□□□□ -1.4
SNRNP40-206ENST00000489853 BAZ1BQ9UIG0 1483 aaKnown RBP6.3□□□□□ -1.4
SNRNP40-206ENST00000489853 KIF21BO75037 1637 aa6.29□□□□□ -1.4
SNRNP40-206ENST00000489853 AAMPQ13685 434 aa6.29□□□□□ -1.4
SNRNP40-206ENST00000489853 DCAF11Q8TEB1 546 aa6.29□□□□□ -1.4
SNRNP40-206ENST00000489853 MROH2BQ7Z745 1585 aa6.29□□□□□ -1.4
SNRNP40-206ENST00000489853 PEG3Q9GZU2 1588 aa6.29□□□□□ -1.4
SNRNP40-206ENST00000489853 RAB3GAP2Q9H2M9 1393 aa6.29□□□□□ -1.4
SNRNP40-206ENST00000489853 MS4A4AQ96JQ5 239 aa6.29□□□□□ -1.4
SNRNP40-206ENST00000489853 LAMC3Q9Y6N6 1575 aa6.28□□□□□ -1.4
SNRNP40-206ENST00000489853 CCNB3Q8WWL7 1395 aa6.28□□□□□ -1.4
SNRNP40-206ENST00000489853 SMG6Q86US8 1419 aaKnown RBP6.28□□□□□ -1.4
SNRNP40-206ENST00000489853 NLRP6P59044 892 aa6.28□□□□□ -1.4
SNRNP40-206ENST00000489853 PDE4CQ08493 712 aa6.28□□□□□ -1.4
SNRNP40-206ENST00000489853 MKRN3Q13064 507 aaKnown RBP6.28□□□□□ -1.4
SNRNP40-206ENST00000489853 BARGINQ6ZT62 677 aa6.28□□□□□ -1.4
SNRNP40-206ENST00000489853 SIN3AQ96ST3 1273 aa6.28□□□□□ -1.4
SNRNP40-206ENST00000489853 HIRIP3Q9BW71 556 aaPredicted RBP6.28□□□□□ -1.4
SNRNP40-206ENST00000489853 RRAGDQ9NQL2 400 aaPredicted RBP6.28□□□□□ -1.4
SNRNP40-206ENST00000489853 CENPJQ9HC77 1338 aaPredicted RBP6.28□□□□□ -1.4
SNRNP40-206ENST00000489853 PNNQ9H307 717 aaKnown RBP6.27□□□□□ -1.41
SNRNP40-206ENST00000489853 SETD5Q9C0A6 1442 aa6.27□□□□□ -1.41
SNRNP40-206ENST00000489853 CALD1Q05682 793 aaKnown RBP6.27□□□□□ -1.41
SNRNP40-206ENST00000489853 GOLGA2Q08379 1002 aa6.27□□□□□ -1.41
SNRNP40-206ENST00000489853 L1TD1Q5T7N2 865 aaKnown RBP6.27□□□□□ -1.41
SNRNP40-206ENST00000489853 MARVELD3Q96A59 401 aa6.27□□□□□ -1.41
SNRNP40-206ENST00000489853 NAP1L5Q96NT1 182 aaPredicted RBP6.27□□□□□ -1.41
SNRNP40-206ENST00000489853 CLCN1P35523 988 aa6.26□□□□□ -1.41
SNRNP40-206ENST00000489853 KANK4Q5T7N3 995 aaPredicted RBP6.26□□□□□ -1.41
SNRNP40-206ENST00000489853 TMEM121BQ9BXQ6 578 aaPredicted RBP6.26□□□□□ -1.41
SNRNP40-206ENST00000489853 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP6.26□□□□□ -1.41
SNRNP40-206ENST00000489853 SNPHO15079 494 aa6.25□□□□□ -1.41
SNRNP40-206ENST00000489853 CRISPLD2Q9H0B8 497 aa6.25□□□□□ -1.41
SNRNP40-206ENST00000489853 PDCL3Q9H2J4 239 aa6.25□□□□□ -1.41
SNRNP40-206ENST00000489853 NUDCQ9Y266 331 aa6.25□□□□□ -1.41
SNRNP40-206ENST00000489853 CADPSQ9ULU8 1353 aa6.25□□□□□ -1.41
SNRNP40-206ENST00000489853 BAZ1AQ9NRL2 1556 aaPredicted RBP6.25□□□□□ -1.41
SNRNP40-206ENST00000489853 WIZO95785 1651 aa6.25□□□□□ -1.41
SNRNP40-206ENST00000489853 WDR62O43379 1518 aa6.25□□□□□ -1.41
SNRNP40-206ENST00000489853 PDS5BQ9NTI5 1447 aa6.25□□□□□ -1.41
SNRNP40-206ENST00000489853 A0A0U1RQG5 324 aaPredicted RBP6.25□□□□□ -1.41
SNRNP40-206ENST00000489853 C3orf67Q6ZVT6 689 aa6.25□□□□□ -1.41
SNRNP40-206ENST00000489853 ARID3AQ99856 593 aa6.25□□□□□ -1.41
SNRNP40-206ENST00000489853 KDM4CQ9H3R0 1056 aa6.25□□□□□ -1.41
SNRNP40-206ENST00000489853 MFSD10Q14728 455 aa6.24□□□□□ -1.41
SNRNP40-206ENST00000489853 DPY19L2Q6NUT2 758 aa6.24□□□□□ -1.41
SNRNP40-206ENST00000489853 ILDR1Q86SU0 546 aaPredicted RBP6.24□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms