RNA–Protein interactions for RNA: ENST00000487617.5

HDAC4-209, Transcript of histone deacetylase 4, humanhuman

TSL 3

Gene HDAC4, Length 819 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-209ENST00000487617 KIF15Q9NS87 1388 aa31.59■■■□□ 2.65
HDAC4-209ENST00000487617 RRP7BPQ9NSQ0 103 aa31.59■■■□□ 2.65
HDAC4-209ENST00000487617 KDM5DQ9BY66 1539 aa31.59■■■□□ 2.65
HDAC4-209ENST00000487617 CROCC2H7BZ55 1655 aa31.58■■■□□ 2.65
HDAC4-209ENST00000487617 DUOX2Q9NRD8 1548 aa31.58■■■□□ 2.65
HDAC4-209ENST00000487617 FAM135AQ9P2D6 1515 aa31.57■■■□□ 2.64
HDAC4-209ENST00000487617 CHIC2Q9UKJ5 165 aa31.56■■■□□ 2.64
HDAC4-209ENST00000487617 EIF2AK4Q9P2K8 1649 aaKnown RBP31.53■■■□□ 2.64
HDAC4-209ENST00000487617 PPARGC1BQ86YN6 1023 aaKnown RBP31.53■■■□□ 2.64
HDAC4-209ENST00000487617 RNF17Q9BXT8 1623 aaKnown RBP31.52■■■□□ 2.64
HDAC4-209ENST00000487617 ANKRD30AQ9BXX3 1397 aa31.52■■■□□ 2.64
HDAC4-209ENST00000487617 FBXO31Q5XUX0 539 aaPredicted RBP31.49■■■□□ 2.63
HDAC4-209ENST00000487617 ERBINQ96RT1 1412 aa31.49■■■□□ 2.63
HDAC4-209ENST00000487617 PZPP20742 1482 aa31.47■■■□□ 2.63
HDAC4-209ENST00000487617 DMRT2Q9Y5R5 561 aa31.45■■■□□ 2.63
HDAC4-209ENST00000487617 ABCC3O15438 1527 aa31.44■■■□□ 2.62
HDAC4-209ENST00000487617 NCOA1Q15788 1441 aa31.44■■■□□ 2.62
HDAC4-209ENST00000487617 MYO3AQ8NEV4 1616 aa31.44■■■□□ 2.62
HDAC4-209ENST00000487617 TNRQ92752 1358 aa31.43■■■□□ 2.62
HDAC4-209ENST00000487617 MROH1Q8NDA8 1641 aa31.42■■■□□ 2.62
HDAC4-209ENST00000487617 STRCQ7RTU9 1775 aa31.41■■■□□ 2.62
HDAC4-209ENST00000487617 ADGRL2O95490 1459 aa31.4■■■□□ 2.62
HDAC4-209ENST00000487617 CEP170BQ9Y4F5 1589 aaPredicted RBP31.4■■■□□ 2.62
HDAC4-209ENST00000487617 ILDR1Q86SU0 546 aaPredicted RBP31.39■■■□□ 2.62
HDAC4-209ENST00000487617 GRWD1Q9BQ67 446 aaKnown RBP eCLIP31.39■■■□□ 2.62
HDAC4-209ENST00000487617 CAMSAP1Q5T5Y3 1602 aa31.38■■■□□ 2.61
HDAC4-209ENST00000487617 ZC3H13Q5T200 1668 aaKnown RBP31.38■■■□□ 2.61
HDAC4-209ENST00000487617 ZNF142P52746 1687 aaPredicted RBP31.38■■■□□ 2.61
HDAC4-209ENST00000487617 A2ML1A8K2U0 1454 aa31.36■■■□□ 2.61
HDAC4-209ENST00000487617 PRDM15P57071 1507 aaPredicted RBP31.35■■■□□ 2.61
HDAC4-209ENST00000487617 PTPRTO14522 1441 aa31.33■■■□□ 2.61
HDAC4-209ENST00000487617 KANK1Q14678 1352 aa31.33■■■□□ 2.61
HDAC4-209ENST00000487617 NCKAP5LQ9HCH0 1330 aa31.31■■■□□ 2.6
HDAC4-209ENST00000487617 CEP152O94986 1710 aa31.31■■■□□ 2.6
HDAC4-209ENST00000487617 PLA2R1Q13018 1463 aa31.29■■■□□ 2.6
HDAC4-209ENST00000487617 DEPDC5O75140 1603 aa31.28■■■□□ 2.6
HDAC4-209ENST00000487617 ITGAEP38570 1179 aa31.28■■■□□ 2.6
HDAC4-209ENST00000487617 ANKRD50Q9ULJ7 1429 aa31.28■■■□□ 2.6
HDAC4-209ENST00000487617 ERVK-7P63135 1459 aa31.27■■■□□ 2.6
HDAC4-209ENST00000487617 NLRP1Q9C000 1473 aa31.27■■■□□ 2.6
HDAC4-209ENST00000487617 PKD2Q13563 968 aa31.27■■■□□ 2.6
HDAC4-209ENST00000487617 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP31.27■■■□□ 2.67e-7■■■■■ 52.8
HDAC4-209ENST00000487617 SPATA31D1Q6ZQQ2 1576 aa31.26■■■□□ 2.59
HDAC4-209ENST00000487617 ARHGAP31Q2M1Z3 1444 aa31.24■■■□□ 2.59
HDAC4-209ENST00000487617 ROCK1Q13464 1354 aa31.23■■■□□ 2.59
HDAC4-209ENST00000487617 CERKQ8TCT0 537 aa31.22■■■□□ 2.59
HDAC4-209ENST00000487617 FBXO41Q8TF61 875 aa31.22■■■□□ 2.59
HDAC4-209ENST00000487617 THEMISQ8N1K5 641 aaPredicted RBP31.21■■■□□ 2.59
HDAC4-209ENST00000487617 VWDEQ8N2E2 1590 aa31.19■■■□□ 2.58
HDAC4-209ENST00000487617 LMTK2Q8IWU2 1503 aa31.19■■■□□ 2.58
HDAC4-209ENST00000487617 UGGT1Q9NYU2 1555 aa31.18■■■□□ 2.58
HDAC4-209ENST00000487617 RRBP1Q9P2E9 1410 aaKnown RBP31.15■■■□□ 2.58
HDAC4-209ENST00000487617 ANKLE2Q86XL3 938 aa31.13■■■□□ 2.57
HDAC4-209ENST00000487617 CFAP65Q6ZU64 1925 aaKnown RBP31.13■■■□□ 2.57
HDAC4-209ENST00000487617 EFCAB6Q5THR3 1501 aa31.08■■■□□ 2.57
HDAC4-209ENST00000487617 ZNF335Q9H4Z2 1342 aaPredicted RBP31.05■■■□□ 2.56
HDAC4-209ENST00000487617 LTBP4Q8N2S1 1624 aa31.04■■■□□ 2.56
HDAC4-209ENST00000487617 UNC13BO14795 1591 aa31.04■■■□□ 2.56
HDAC4-209ENST00000487617 NEURL4Q96JN8 1562 aa31.03■■■□□ 2.56
HDAC4-209ENST00000487617 POLR1AO95602 1720 aaPredicted RBP31.03■■■□□ 2.56
HDAC4-209ENST00000487617 NOS1P29475 1434 aa31.01■■■□□ 2.55
HDAC4-209ENST00000487617 STAG3Q9UJ98 1225 aa31.01■■■□□ 2.55
HDAC4-209ENST00000487617 UBR1Q8IWV7 1749 aa30.99■■■□□ 2.55
HDAC4-209ENST00000487617 IDI1Q13907 227 aa30.99■■■□□ 2.55
HDAC4-209ENST00000487617 RPRD2Q5VT52 1461 aaKnown RBP30.99■■■□□ 2.55
HDAC4-209ENST00000487617 NPHP4O75161 1426 aaPredicted RBP30.98■■■□□ 2.55
HDAC4-209ENST00000487617 TET3O43151 1660 aa30.97■■■□□ 2.55
HDAC4-209ENST00000487617 NUP155O75694 1391 aa30.97■■■□□ 2.55
HDAC4-209ENST00000487617 SYNMO15061 1565 aa30.96■■■□□ 2.55
HDAC4-209ENST00000487617 MED14O60244 1454 aa30.96■■■□□ 2.55
HDAC4-209ENST00000487617 PIK3C2BO00750 1634 aa30.95■■■□□ 2.55
HDAC4-209ENST00000487617 SLC52A1Q9NWF4 448 aa30.94■■■□□ 2.54
HDAC4-209ENST00000487617 TXNDC2Q86VQ3 553 aa30.92■■■□□ 2.54
HDAC4-209ENST00000487617 ARHGAP23Q9P227 1491 aa30.91■■■□□ 2.54
HDAC4-209ENST00000487617 EID1Q9Y6B2 187 aa30.91■■■□□ 2.54
HDAC4-209ENST00000487617 SLIT1O75093 1534 aa30.91■■■□□ 2.54
HDAC4-209ENST00000487617 IQGAP3Q86VI3 1631 aa30.91■■■□□ 2.54
HDAC4-209ENST00000487617 SCAF11Q99590 1463 aaKnown RBP30.9■■■□□ 2.54
HDAC4-209ENST00000487617 LTKP29376 864 aa30.9■■■□□ 2.54
HDAC4-209ENST00000487617 GCC2Q8IWJ2 1684 aa30.9■■■□□ 2.54
HDAC4-209ENST00000487617 TMEM2Q9UHN6 1383 aa30.89■■■□□ 2.54
HDAC4-209ENST00000487617 NAIPQ13075 1403 aa30.89■■■□□ 2.53
HDAC4-209ENST00000487617 IQSEC2Q5JU85 1478 aa30.88■■■□□ 2.53
HDAC4-209ENST00000487617 IQGAP1P46940 1657 aa30.87■■■□□ 2.53
HDAC4-209ENST00000487617 E9PCH4 1651 aa30.84■■■□□ 2.53
HDAC4-209ENST00000487617 ADGRB3O60242 1522 aa30.83■■■□□ 2.53
HDAC4-209ENST00000487617 KDM5AP29375 1690 aaKnown RBP30.83■■■□□ 2.53
HDAC4-209ENST00000487617 HFM1A2PYH4 1435 aa30.81■■■□□ 2.52
HDAC4-209ENST00000487617 CPS1P31327 1500 aa30.78■■■□□ 2.52
HDAC4-209ENST00000487617 CHGAP10645 457 aaKnown RBP30.77■■■□□ 2.52
HDAC4-209ENST00000487617 TRIM52Q96A61 297 aa30.74■■■□□ 2.51
HDAC4-209ENST00000487617 UBAP1LF5GYI3 381 aa30.72■■■□□ 2.51
HDAC4-209ENST00000487617 TMEM131LA2VDJ0 1609 aa30.69■■■□□ 2.5
HDAC4-209ENST00000487617 HDGFP51858 240 aaKnown RBP30.69■■■□□ 2.5
HDAC4-209ENST00000487617 RIMS2Q9UQ26 1411 aa30.68■■■□□ 2.5
HDAC4-209ENST00000487617 PPP1R15AO75807 674 aaPredicted RBP30.67■■■□□ 2.5
HDAC4-209ENST00000487617 BCANQ96GW7 911 aa30.67■■■□□ 2.5
HDAC4-209ENST00000487617 ZFYVE9O95405 1425 aa30.66■■■□□ 2.5
HDAC4-209ENST00000487617 SLC26A8Q96RN1 970 aa30.65■■■□□ 2.5
HDAC4-209ENST00000487617 ABCF1Q8NE71 845 aaKnown RBP eCLIP30.63■■■□□ 2.49
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms