RNA–Protein interactions for RNA: ENST00000487617.5

HDAC4-209, Transcript of histone deacetylase 4, humanhuman

TSL 3

Gene HDAC4, Length 819 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-209ENST00000487617 NISCHQ9Y2I1 1504 aa50.09■■■■■ 5.61
HDAC4-209ENST00000487617 CCDC180Q9P1Z9 1646 aa44.61■■■■■ 4.73
HDAC4-209ENST00000487617 ABCC9O60706 1549 aa44.1■■■■■ 4.65
HDAC4-209ENST00000487617 RB1CC1Q8TDY2 1594 aa42.21■■■■■ 4.35
HDAC4-209ENST00000487617 DCAF8L2P0C7V8 631 aa42.13■■■■■ 4.33
HDAC4-209ENST00000487617 NACADO15069 1562 aa42.08■■■■■ 4.33
HDAC4-209ENST00000487617 MYO15BQ96JP2 1530 aa41.69■■■■■ 4.26
HDAC4-209ENST00000487617 ZCCHC6Q5VYS8 1495 aaKnown RBP41.65■■■■■ 4.26
HDAC4-209ENST00000487617 DCAF1Q9Y4B6 1507 aa41.39■■■■■ 4.22
HDAC4-209ENST00000487617 PABPN1Q86U42 306 aaKnown RBP eCLIP41.21■■■■■ 4.19
HDAC4-209ENST00000487617 UNC13AQ9UPW8 1703 aa41.15■■■■■ 4.18
HDAC4-209ENST00000487617 BICRAQ9NZM4 1560 aa40.93■■■■■ 4.14
HDAC4-209ENST00000487617 DNAJC5BQ9UF47 199 aa40.81■■■■■ 4.12
HDAC4-209ENST00000487617 SCRIBQ14160 1630 aa40.75■■■■■ 4.11
HDAC4-209ENST00000487617 SHROOM4Q9ULL8 1493 aa40.46■■■■■ 4.07
HDAC4-209ENST00000487617 EIF4G1Q04637 1599 aaKnown RBP39.89■■■■□ 3.98
HDAC4-209ENST00000487617 CC2D2AQ9P2K1 1620 aa39.82■■■■□ 3.96
HDAC4-209ENST00000487617 CECR2Q9BXF3 1484 aa39.66■■■■□ 3.94
HDAC4-209ENST00000487617 SMARCA4P51532 1647 aa38.92■■■■□ 3.82
HDAC4-209ENST00000487617 NCAPD3P42695 1498 aa38.86■■■■□ 3.81
HDAC4-209ENST00000487617 BAZ1AQ9NRL2 1556 aaPredicted RBP38.84■■■■□ 3.81
HDAC4-209ENST00000487617 ATAD2BQ9ULI0 1458 aa38.84■■■■□ 3.81
HDAC4-209ENST00000487617 SMARCA2P51531 1590 aa38.75■■■■□ 3.79
HDAC4-209ENST00000487617 MROH2BQ7Z745 1585 aa38.61■■■■□ 3.77
HDAC4-209ENST00000487617 HMGXB3Q12766 1538 aa38.6■■■■□ 3.77
HDAC4-209ENST00000487617 PEG3Q9GZU2 1588 aa38.52■■■■□ 3.76
HDAC4-209ENST00000487617 BAZ1BQ9UIG0 1483 aaKnown RBP38.5■■■■□ 3.75
HDAC4-209ENST00000487617 WIZO95785 1651 aa38.15■■■■□ 3.7
HDAC4-209ENST00000487617 RSF1Q96T23 1441 aaPredicted RBP38.06■■■■□ 3.68
HDAC4-209ENST00000487617 ERCC6Q03468 1493 aa38.05■■■■□ 3.68
HDAC4-209ENST00000487617 NESP48681 1621 aa38.05■■■■□ 3.68
HDAC4-209ENST00000487617 LAMC3Q9Y6N6 1575 aa37.85■■■■□ 3.65
HDAC4-209ENST00000487617 TOP2AP11388 1531 aaKnown RBP37.74■■■■□ 3.63
HDAC4-209ENST00000487617 CADPSQ9ULU8 1353 aa37.73■■■■□ 3.63
HDAC4-209ENST00000487617 CUX2O14529 1486 aa37.72■■■■□ 3.63
HDAC4-209ENST00000487617 PDS5BQ9NTI5 1447 aa37.67■■■■□ 3.62
HDAC4-209ENST00000487617 KIF21AQ7Z4S6 1674 aa37.51■■■■□ 3.6
HDAC4-209ENST00000487617 THOC2Q8NI27 1593 aaKnown RBP37.48■■■■□ 3.59
HDAC4-209ENST00000487617 CFTRP13569 1480 aa37.41■■■■□ 3.58
HDAC4-209ENST00000487617 CCDC88BA6NC98 1476 aa37.33■■■■□ 3.57
HDAC4-209ENST00000487617 FANCD2Q9BXW9 1451 aa37.3■■■■□ 3.56
HDAC4-209ENST00000487617 MRC2Q9UBG0 1479 aa37.29■■■■□ 3.56
HDAC4-209ENST00000487617 CEP164Q9UPV0 1460 aa37.27■■■■□ 3.56
HDAC4-209ENST00000487617 WDR62O43379 1518 aa37.15■■■■□ 3.54
HDAC4-209ENST00000487617 DNAJC5Q9H3Z4 198 aa37.02■■■■□ 3.52
HDAC4-209ENST00000487617 PRDM2Q13029 1718 aa36.97■■■■□ 3.51
HDAC4-209ENST00000487617 SUPT5HO00267 1087 aaKnown RBP36.93■■■■□ 3.5
HDAC4-209ENST00000487617 URB2Q14146 1524 aaKnown RBP36.93■■■■□ 3.5
HDAC4-209ENST00000487617 TOPBP1Q92547 1522 aa36.64■■■■□ 3.46
HDAC4-209ENST00000487617 ABCC8Q09428 1581 aa36.61■■■■□ 3.45
HDAC4-209ENST00000487617 DNMBPQ6XZF7 1577 aa36.55■■■■□ 3.44
HDAC4-209ENST00000487617 IFT140Q96RY7 1462 aa36.5■■■■□ 3.43
HDAC4-209ENST00000487617 ZNF608Q9ULD9 1512 aaPredicted RBP36.38■■■■□ 3.41
HDAC4-209ENST00000487617 POLA1P09884 1462 aaPredicted RBP36.31■■■■□ 3.4
HDAC4-209ENST00000487617 CUX1P39880 1505 aa36.24■■■■□ 3.39
HDAC4-209ENST00000487617 TARBP1Q13395 1621 aaKnown RBP36.23■■■■□ 3.39
HDAC4-209ENST00000487617 SOGA1O94964 1423 aa36.19■■■■□ 3.38
HDAC4-209ENST00000487617 FGD5Q6ZNL6 1462 aa36.18■■■■□ 3.38
HDAC4-209ENST00000487617 RAD54L2Q9Y4B4 1467 aa36.18■■■■□ 3.38
HDAC4-209ENST00000487617 EIF4G3O43432 1585 aaKnown RBP36.17■■■■□ 3.38
HDAC4-209ENST00000487617 OSCARQ8IYS5 282 aa36.16■■■■□ 3.38
HDAC4-209ENST00000487617 AQRO60306 1485 aaKnown RBP eCLIP36.16■■■■□ 3.386e-9■■■■■ 37.6
HDAC4-209ENST00000487617 TDRD9Q8NDG6 1382 aaKnown RBP36.04■■■■□ 3.36
HDAC4-209ENST00000487617 WRNQ14191 1432 aaPredicted RBP eCLIP35.91■■■■□ 3.34
HDAC4-209ENST00000487617 WDR97A6NE52 1622 aa35.9■■■■□ 3.34
HDAC4-209ENST00000487617 FBLN2P98095 1184 aa35.85■■■■□ 3.33
HDAC4-209ENST00000487617 TOP2BQ02880 1626 aa35.8■■■■□ 3.32
HDAC4-209ENST00000487617 ABCA10Q8WWZ4 1543 aa35.8■■■■□ 3.32
HDAC4-209ENST00000487617 GRIN2BQ13224 1484 aa35.8■■■■□ 3.32
HDAC4-209ENST00000487617 SNAPC4Q5SXM2 1469 aa35.8■■■■□ 3.32
HDAC4-209ENST00000487617 SYNJ1O43426 1573 aa35.79■■■■□ 3.32
HDAC4-209ENST00000487617 BIVM-ERCC5R4GMW8 1640 aa35.78■■■■□ 3.32
HDAC4-209ENST00000487617 CHD1O14646 1710 aa35.75■■■■□ 3.31
HDAC4-209ENST00000487617 GAPVD1Q14C86 1478 aa35.74■■■■□ 3.31
HDAC4-209ENST00000487617 TRIM41Q8WV44 630 aa35.72■■■■□ 3.31
HDAC4-209ENST00000487617 MAGI1Q96QZ7 1491 aaPredicted RBP35.71■■■■□ 3.31
HDAC4-209ENST00000487617 CHMP7Q8WUX9 453 aaPredicted RBP35.67■■■■□ 3.3
HDAC4-209ENST00000487617 ABCA5Q8WWZ7 1642 aa35.65■■■■□ 3.3
HDAC4-209ENST00000487617 PBRM1Q86U86 1689 aa35.61■■■■□ 3.29
HDAC4-209ENST00000487617 SYNJ2O15056 1496 aa35.59■■■■□ 3.29
HDAC4-209ENST00000487617 RIMBP3CA6NJZ7 1639 aa35.54■■■■□ 3.28
HDAC4-209ENST00000487617 RIMBP3BA6NNM3 1639 aa35.54■■■■□ 3.28
HDAC4-209ENST00000487617 RIMBP3Q9UFD9 1639 aa35.54■■■■□ 3.28
HDAC4-209ENST00000487617 ARHGEF11O15085 1522 aa35.52■■■■□ 3.28
HDAC4-209ENST00000487617 CLASP1Q7Z460 1538 aa35.39■■■■□ 3.26
HDAC4-209ENST00000487617 ERICH3Q5RHP9 1530 aa35.36■■■■□ 3.25
HDAC4-209ENST00000487617 ADAMTS12P58397 1594 aa35.35■■■■□ 3.25
HDAC4-209ENST00000487617 FHAD1B1AJZ9 1412 aa35.32■■■■□ 3.25
HDAC4-209ENST00000487617 GRIN2AQ12879 1464 aa35.32■■■■□ 3.24
HDAC4-209ENST00000487617 CYB5RLQ6IPT4 315 aa35.3■■■■□ 3.24
HDAC4-209ENST00000487617 ARAP1Q96P48 1450 aa35.22■■■■□ 3.23
HDAC4-209ENST00000487617 KIF27Q86VH2 1401 aa35.19■■■■□ 3.22
HDAC4-209ENST00000487617 NUP160Q12769 1436 aa35.17■■■■□ 3.22
HDAC4-209ENST00000487617 CEP170Q5SW79 1584 aa35.14■■■■□ 3.22
HDAC4-209ENST00000487617 IGF1RP08069 1367 aa35.1■■■■□ 3.21
HDAC4-209ENST00000487617 CUL7Q14999 1698 aa34.94■■■■□ 3.18
HDAC4-209ENST00000487617 ERCC6L2Q5T890 1561 aa34.91■■■■□ 3.18
HDAC4-209ENST00000487617 CARMIL1Q5VZK9 1371 aa34.89■■■■□ 3.18
HDAC4-209ENST00000487617 SHROOM2Q13796 1616 aa34.89■■■■□ 3.18
HDAC4-209ENST00000487617 JPH4Q96JJ6 628 aa34.86■■■■□ 3.17
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms