RNA–Protein interactions for RNA: ENST00000485618.1

SF3A1-208, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 593 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-208ENST00000485618 CAMSAP1Q5T5Y3 1602 aa12.48□□□□□ -0.41
SF3A1-208ENST00000485618 DAPK1P53355 1430 aa12.48□□□□□ -0.41
SF3A1-208ENST00000485618 LTBP4Q8N2S1 1624 aa12.48□□□□□ -0.41
SF3A1-208ENST00000485618 MYO3AQ8NEV4 1616 aa12.48□□□□□ -0.41
SF3A1-208ENST00000485618 SHANK2Q9UPX8 1470 aa12.47□□□□□ -0.41
SF3A1-208ENST00000485618 ABCC5O15440 1437 aa12.47□□□□□ -0.41
SF3A1-208ENST00000485618 RRBP1Q9P2E9 1410 aaKnown RBP12.47□□□□□ -0.41
SF3A1-208ENST00000485618 ITGAEP38570 1179 aa12.47□□□□□ -0.41
SF3A1-208ENST00000485618 PPP6R1Q9UPN7 881 aa12.47□□□□□ -0.41
SF3A1-208ENST00000485618 A2MP01023 1474 aa12.46□□□□□ -0.41
SF3A1-208ENST00000485618 DHX29Q7Z478 1369 aaKnown RBP12.46□□□□□ -0.41
SF3A1-208ENST00000485618 ZNF142P52746 1687 aaPredicted RBP12.46□□□□□ -0.41
SF3A1-208ENST00000485618 CHIC2Q9UKJ5 165 aa12.46□□□□□ -0.41
SF3A1-208ENST00000485618 IQSEC2Q5JU85 1478 aa12.46□□□□□ -0.42
SF3A1-208ENST00000485618 ZMYM3Q14202 1370 aa12.45□□□□□ -0.42
SF3A1-208ENST00000485618 RRP7BPQ9NSQ0 103 aa12.45□□□□□ -0.42
SF3A1-208ENST00000485618 DNMT1P26358 1616 aaKnown RBP12.44□□□□□ -0.42
SF3A1-208ENST00000485618 MAST1Q9Y2H9 1570 aa12.44□□□□□ -0.42
SF3A1-208ENST00000485618 ADGBQ8N7X0 1667 aa12.44□□□□□ -0.42
SF3A1-208ENST00000485618 KIF15Q9NS87 1388 aa12.43□□□□□ -0.42
SF3A1-208ENST00000485618 CEP170BQ9Y4F5 1589 aaPredicted RBP12.43□□□□□ -0.42
SF3A1-208ENST00000485618 KIF3BO15066 747 aa12.43□□□□□ -0.42
SF3A1-208ENST00000485618 ROCK1Q13464 1354 aa12.43□□□□□ -0.42
SF3A1-208ENST00000485618 ACIN1Q9UKV3 1341 aaKnown RBP12.42□□□□□ -0.42
SF3A1-208ENST00000485618 NCKAP5LQ9HCH0 1330 aa12.41□□□□□ -0.42
SF3A1-208ENST00000485618 PLA2R1Q13018 1463 aa12.41□□□□□ -0.42
SF3A1-208ENST00000485618 PTPRKQ15262 1439 aa12.41□□□□□ -0.42
SF3A1-208ENST00000485618 GGT6Q6P531 493 aa12.41□□□□□ -0.42
SF3A1-208ENST00000485618 DUOX2Q9NRD8 1548 aa12.41□□□□□ -0.42
SF3A1-208ENST00000485618 ZNF335Q9H4Z2 1342 aaPredicted RBP12.39□□□□□ -0.43
SF3A1-208ENST00000485618 ADGRL2O95490 1459 aa12.39□□□□□ -0.43
SF3A1-208ENST00000485618 KANK1Q14678 1352 aa12.38□□□□□ -0.43
SF3A1-208ENST00000485618 CROCC2H7BZ55 1655 aa12.38□□□□□ -0.43
SF3A1-208ENST00000485618 WASHC2CQ9Y4E1 1318 aa12.37□□□□□ -0.43
SF3A1-208ENST00000485618 ERBINQ96RT1 1412 aa12.37□□□□□ -0.43
SF3A1-208ENST00000485618 PKD2Q13563 968 aa12.37□□□□□ -0.43
SF3A1-208ENST00000485618 ANKRD50Q9ULJ7 1429 aa12.37□□□□□ -0.43
SF3A1-208ENST00000485618 A2ML1A8K2U0 1454 aa12.36□□□□□ -0.43
SF3A1-208ENST00000485618 UBAP1LF5GYI3 381 aa12.35□□□□□ -0.43
SF3A1-208ENST00000485618 KDM5DQ9BY66 1539 aa12.35□□□□□ -0.43
SF3A1-208ENST00000485618 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.34□□□□□ -0.435e-10■■□□□ 11.6
SF3A1-208ENST00000485618 POLR1AO95602 1720 aaPredicted RBP12.34□□□□□ -0.43
SF3A1-208ENST00000485618 FAM135AQ9P2D6 1515 aa12.33□□□□□ -0.44
SF3A1-208ENST00000485618 EIF2AK4Q9P2K8 1649 aaKnown RBP12.33□□□□□ -0.44
SF3A1-208ENST00000485618 TNRQ92752 1358 aa12.32□□□□□ -0.44
SF3A1-208ENST00000485618 PZPP20742 1482 aa12.32□□□□□ -0.44
SF3A1-208ENST00000485618 NEURL4Q96JN8 1562 aa12.31□□□□□ -0.44
SF3A1-208ENST00000485618 TRIM26Q12899 539 aaPredicted RBP12.31□□□□□ -0.44
SF3A1-208ENST00000485618 HFM1A2PYH4 1435 aa12.29□□□□□ -0.44
SF3A1-208ENST00000485618 CPS1P31327 1500 aa12.29□□□□□ -0.44
SF3A1-208ENST00000485618 FBXO31Q5XUX0 539 aaPredicted RBP12.28□□□□□ -0.44
SF3A1-208ENST00000485618 TRIM52Q96A61 297 aa12.28□□□□□ -0.44
SF3A1-208ENST00000485618 SCAF1Q9H7N4 1312 aaKnown RBP12.28□□□□□ -0.44
SF3A1-208ENST00000485618 NAIPQ13075 1403 aa12.28□□□□□ -0.44
SF3A1-208ENST00000485618 HRCP23327 699 aa12.27□□□□□ -0.45
SF3A1-208ENST00000485618 NUP155O75694 1391 aa12.27□□□□□ -0.45
SF3A1-208ENST00000485618 NLRP1Q9C000 1473 aa12.27□□□□□ -0.45
SF3A1-208ENST00000485618 SETD5Q9C0A6 1442 aa12.26□□□□□ -0.45
SF3A1-208ENST00000485618 UGGT1Q9NYU2 1555 aa12.26□□□□□ -0.45
SF3A1-208ENST00000485618 RNF17Q9BXT8 1623 aaKnown RBP12.26□□□□□ -0.45
SF3A1-208ENST00000485618 ZC3H13Q5T200 1668 aaKnown RBP12.25□□□□□ -0.45
SF3A1-208ENST00000485618 DEPDC5O75140 1603 aa12.24□□□□□ -0.45
SF3A1-208ENST00000485618 NPHP4O75161 1426 aaPredicted RBP12.24□□□□□ -0.45
SF3A1-208ENST00000485618 PIP4K2BP78356 416 aa12.24□□□□□ -0.45
SF3A1-208ENST00000485618 MED1Q15648 1581 aaPredicted RBP12.24□□□□□ -0.45
SF3A1-208ENST00000485618 VWDEQ8N2E2 1590 aa12.24□□□□□ -0.45
SF3A1-208ENST00000485618 ABCC3O15438 1527 aa12.23□□□□□ -0.45
SF3A1-208ENST00000485618 ANKLE2Q86XL3 938 aa12.23□□□□□ -0.45
SF3A1-208ENST00000485618 IQGAP1P46940 1657 aa12.22□□□□□ -0.45
SF3A1-208ENST00000485618 PRDM15P57071 1507 aaPredicted RBP12.22□□□□□ -0.45
SF3A1-208ENST00000485618 TOM1O60784 492 aa12.22□□□□□ -0.45
SF3A1-208ENST00000485618 THEMISQ8N1K5 641 aaPredicted RBP12.22□□□□□ -0.45
SF3A1-208ENST00000485618 MED14O60244 1454 aa12.21□□□□□ -0.45
SF3A1-208ENST00000485618 ARHGAP31Q2M1Z3 1444 aa12.21□□□□□ -0.45
SF3A1-208ENST00000485618 HSPA1LP34931 641 aa12.21□□□□□ -0.45
SF3A1-208ENST00000485618 SLC4A1APQ9BWU0 796 aaKnown RBP12.21□□□□□ -0.45
SF3A1-208ENST00000485618 ERVK-7P63135 1459 aa12.21□□□□□ -0.46
SF3A1-208ENST00000485618 GCC2Q8IWJ2 1684 aa12.2□□□□□ -0.46
SF3A1-208ENST00000485618 LMTK2Q8IWU2 1503 aa12.2□□□□□ -0.46
SF3A1-208ENST00000485618 MROH1Q8NDA8 1641 aa12.19□□□□□ -0.46
SF3A1-208ENST00000485618 SYNMO15061 1565 aa12.19□□□□□ -0.46
SF3A1-208ENST00000485618 CEP152O94986 1710 aa12.19□□□□□ -0.46
SF3A1-208ENST00000485618 RPRD2Q5VT52 1461 aaKnown RBP12.19□□□□□ -0.46
SF3A1-208ENST00000485618 SLC52A1Q9NWF4 448 aa12.18□□□□□ -0.46
SF3A1-208ENST00000485618 STAG3Q9UJ98 1225 aa12.18□□□□□ -0.46
SF3A1-208ENST00000485618 UNC13BO14795 1591 aa12.18□□□□□ -0.46
SF3A1-208ENST00000485618 RAB3GAP2Q9H2M9 1393 aa12.18□□□□□ -0.46
SF3A1-208ENST00000485618 ALKQ9UM73 1620 aa12.17□□□□□ -0.46
SF3A1-208ENST00000485618 MPHOSPH9Q99550 1183 aa12.16□□□□□ -0.46
SF3A1-208ENST00000485618 UBR1Q8IWV7 1749 aa12.16□□□□□ -0.46
SF3A1-208ENST00000485618 LRRC7Q96NW7 1537 aa12.16□□□□□ -0.46
SF3A1-208ENST00000485618 STRCP1A6NGW2 1772 aa12.15□□□□□ -0.46
SF3A1-208ENST00000485618 HDGFP51858 240 aaKnown RBP12.15□□□□□ -0.46
SF3A1-208ENST00000485618 IQGAP3Q86VI3 1631 aa12.15□□□□□ -0.47
SF3A1-208ENST00000485618 SCAF11Q99590 1463 aaKnown RBP12.14□□□□□ -0.47
SF3A1-208ENST00000485618 TET3O43151 1660 aa12.14□□□□□ -0.47
SF3A1-208ENST00000485618 PHF23Q9BUL5 403 aaPredicted RBP12.14□□□□□ -0.47
SF3A1-208ENST00000485618 SENP3Q9H4L4 574 aaPredicted RBP12.14□□□□□ -0.47
SF3A1-208ENST00000485618 EFCAB6Q5THR3 1501 aa12.13□□□□□ -0.47
SF3A1-208ENST00000485618 PCGF6Q9BYE7 350 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms