RNA–Protein interactions for RNA: ENST00000483847.1

SMARCC1-205, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1, humanhuman

TSL 2

Gene SMARCC1, Length 804 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCC1-205ENST00000483847 SHANK2Q9UPX8 1470 aa17.78■□□□□ 0.44
SMARCC1-205ENST00000483847 MBD5Q9P267 1494 aa17.77■□□□□ 0.44
SMARCC1-205ENST00000483847 TIAM1Q13009 1591 aa17.76■□□□□ 0.43
SMARCC1-205ENST00000483847 TNRQ92752 1358 aa17.76■□□□□ 0.43
SMARCC1-205ENST00000483847 TOM1O60784 492 aa17.75■□□□□ 0.43
SMARCC1-205ENST00000483847 MTUS2Q5JR59 1369 aa17.75■□□□□ 0.43
SMARCC1-205ENST00000483847 ALKQ9UM73 1620 aa17.75■□□□□ 0.43
SMARCC1-205ENST00000483847 VWDEQ8N2E2 1590 aa17.74■□□□□ 0.43
SMARCC1-205ENST00000483847 DHX29Q7Z478 1369 aaKnown RBP17.74■□□□□ 0.43
SMARCC1-205ENST00000483847 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.73■□□□□ 0.43
SMARCC1-205ENST00000483847 PZPP20742 1482 aa17.73■□□□□ 0.43
SMARCC1-205ENST00000483847 RTEL1-TNFRSF6BF6WH68 1400 aa17.72■□□□□ 0.43
SMARCC1-205ENST00000483847 KDM5DQ9BY66 1539 aa17.72■□□□□ 0.43
SMARCC1-205ENST00000483847 KIF3BO15066 747 aa17.71■□□□□ 0.43
SMARCC1-205ENST00000483847 ANKLE2Q86XL3 938 aa17.69■□□□□ 0.42
SMARCC1-205ENST00000483847 NPHP4O75161 1426 aaPredicted RBP17.68■□□□□ 0.42
SMARCC1-205ENST00000483847 EHBP1L1Q8N3D4 1523 aa17.67■□□□□ 0.42
SMARCC1-205ENST00000483847 UGGT1Q9NYU2 1555 aa17.67■□□□□ 0.42
SMARCC1-205ENST00000483847 MIA2Q96PC5 1412 aa17.67■□□□□ 0.42
SMARCC1-205ENST00000483847 STRCP1A6NGW2 1772 aa17.67■□□□□ 0.42
SMARCC1-205ENST00000483847 DEPDC5O75140 1603 aa17.67■□□□□ 0.42
SMARCC1-205ENST00000483847 MED14O60244 1454 aa17.67■□□□□ 0.42
SMARCC1-205ENST00000483847 WASHC2CQ9Y4E1 1318 aa17.67■□□□□ 0.42
SMARCC1-205ENST00000483847 FAM135AQ9P2D6 1515 aa17.67■□□□□ 0.42
SMARCC1-205ENST00000483847 THEMISQ8N1K5 641 aaPredicted RBP17.66■□□□□ 0.42
SMARCC1-205ENST00000483847 PHF23Q9BUL5 403 aaPredicted RBP17.66■□□□□ 0.42
SMARCC1-205ENST00000483847 SENP3Q9H4L4 574 aaPredicted RBP17.66■□□□□ 0.42
SMARCC1-205ENST00000483847 CCDC141Q6ZP82 1450 aa17.65■□□□□ 0.42
SMARCC1-205ENST00000483847 NLRP1Q9C000 1473 aa17.65■□□□□ 0.42
SMARCC1-205ENST00000483847 IQGAP1P46940 1657 aa17.64■□□□□ 0.42
SMARCC1-205ENST00000483847 CEP162Q5TB80 1403 aa17.64■□□□□ 0.41
SMARCC1-205ENST00000483847 CAMSAP2Q08AD1 1489 aa17.63■□□□□ 0.41
SMARCC1-205ENST00000483847 LRRC7Q96NW7 1537 aa17.62■□□□□ 0.41
SMARCC1-205ENST00000483847 RNF17Q9BXT8 1623 aaKnown RBP17.6■□□□□ 0.41
SMARCC1-205ENST00000483847 NCOA2Q15596 1464 aa17.58■□□□□ 0.41
SMARCC1-205ENST00000483847 ZC3H13Q5T200 1668 aaKnown RBP17.58■□□□□ 0.4
SMARCC1-205ENST00000483847 SYNMO15061 1565 aa17.57■□□□□ 0.4
SMARCC1-205ENST00000483847 ABCC3O15438 1527 aa17.57■□□□□ 0.4
SMARCC1-205ENST00000483847 ARHGEF5Q12774 1597 aa17.56■□□□□ 0.4
SMARCC1-205ENST00000483847 RGS17Q9UGC6 210 aaPredicted RBP17.55■□□□□ 0.4
SMARCC1-205ENST00000483847 RSPH4AQ5TD94 716 aa17.54■□□□□ 0.4
SMARCC1-205ENST00000483847 ERVK-7P63135 1459 aa17.54■□□□□ 0.4
SMARCC1-205ENST00000483847 UBR1Q8IWV7 1749 aa17.53■□□□□ 0.4
SMARCC1-205ENST00000483847 MROH1Q8NDA8 1641 aa17.52■□□□□ 0.4
SMARCC1-205ENST00000483847 XIRP1Q702N8 1843 aaKnown RBP17.51■□□□□ 0.39
SMARCC1-205ENST00000483847 CEP152O94986 1710 aa17.5■□□□□ 0.39
SMARCC1-205ENST00000483847 TSPY4P0CV99 314 aa17.5■□□□□ 0.39
SMARCC1-205ENST00000483847 TSPY10P0CW01 314 aa17.5■□□□□ 0.39
SMARCC1-205ENST00000483847 CFAP65Q6ZU64 1925 aaKnown RBP17.5■□□□□ 0.39
SMARCC1-205ENST00000483847 SCAF11Q99590 1463 aaKnown RBP17.5■□□□□ 0.39
SMARCC1-205ENST00000483847 MAST1Q9Y2H9 1570 aa17.49■□□□□ 0.39
SMARCC1-205ENST00000483847 EIF2AK4Q9P2K8 1649 aaKnown RBP17.48■□□□□ 0.39
SMARCC1-205ENST00000483847 LTKP29376 864 aa17.48■□□□□ 0.39
SMARCC1-205ENST00000483847 ARHGAP23Q9P227 1491 aa17.46■□□□□ 0.39
SMARCC1-205ENST00000483847 SLIT1O75093 1534 aa17.45■□□□□ 0.38
SMARCC1-205ENST00000483847 TXNDC2Q86VQ3 553 aa17.44■□□□□ 0.38
SMARCC1-205ENST00000483847 POTEAQ6S8J7 498 aa17.42■□□□□ 0.38
SMARCC1-205ENST00000483847 PIK3C2BO00750 1634 aa17.4■□□□□ 0.38
SMARCC1-205ENST00000483847 FAM135BQ49AJ0 1406 aa17.4■□□□□ 0.38
SMARCC1-205ENST00000483847 LRRC9Q6ZRR7 1453 aa17.39■□□□□ 0.37
SMARCC1-205ENST00000483847 PRDM15P57071 1507 aaPredicted RBP17.38■□□□□ 0.37
SMARCC1-205ENST00000483847 DUOX2Q9NRD8 1548 aa17.38■□□□□ 0.37
SMARCC1-205ENST00000483847 TMEM94Q12767 1356 aa17.38■□□□□ 0.37
SMARCC1-205ENST00000483847 ARHGAP31Q2M1Z3 1444 aa17.38■□□□□ 0.37
SMARCC1-205ENST00000483847 ROBO1Q9Y6N7 1651 aa17.37■□□□□ 0.37
SMARCC1-205ENST00000483847 EID1Q9Y6B2 187 aa17.37■□□□□ 0.37
SMARCC1-205ENST00000483847 MAP3K1Q13233 1512 aa17.37■□□□□ 0.37
SMARCC1-205ENST00000483847 RBM33Q96EV2 1170 aaKnown RBP17.36■□□□□ 0.37
SMARCC1-205ENST00000483847 TMEM2Q9UHN6 1383 aa17.36■□□□□ 0.37
SMARCC1-205ENST00000483847 SETD1AO15047 1707 aaKnown RBP17.34■□□□□ 0.37
SMARCC1-205ENST00000483847 KANK4Q5T7N3 995 aaPredicted RBP17.34■□□□□ 0.37
SMARCC1-205ENST00000483847 MYOM3Q5VTT5 1437 aa17.33■□□□□ 0.36
SMARCC1-205ENST00000483847 KIF15Q9NS87 1388 aa17.33■□□□□ 0.36
SMARCC1-205ENST00000483847 TET3O43151 1660 aa17.32■□□□□ 0.36
SMARCC1-205ENST00000483847 SLC26A8Q96RN1 970 aa17.32■□□□□ 0.36
SMARCC1-205ENST00000483847 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.32■□□□□ 0.361e-9■■□□□ 12.4
SMARCC1-205ENST00000483847 EFCAB6Q5THR3 1501 aa17.31■□□□□ 0.36
SMARCC1-205ENST00000483847 KCNA6P17658 529 aa17.31■□□□□ 0.36
SMARCC1-205ENST00000483847 ERBINQ96RT1 1412 aa17.3■□□□□ 0.36
SMARCC1-205ENST00000483847 CROCC2H7BZ55 1655 aa17.3■□□□□ 0.36
SMARCC1-205ENST00000483847 PROSER2Q86WR7 435 aaPredicted RBP17.3■□□□□ 0.36
SMARCC1-205ENST00000483847 RRP7BPQ9NSQ0 103 aa17.3■□□□□ 0.36
SMARCC1-205ENST00000483847 STAG3Q9UJ98 1225 aa17.3■□□□□ 0.36
SMARCC1-205ENST00000483847 VPS8Q8N3P4 1428 aa17.3■□□□□ 0.36
SMARCC1-205ENST00000483847 KDM5AP29375 1690 aaKnown RBP17.29■□□□□ 0.36
SMARCC1-205ENST00000483847 IDI1Q13907 227 aa17.29■□□□□ 0.36
SMARCC1-205ENST00000483847 ABCC5O15440 1437 aa17.29■□□□□ 0.36
SMARCC1-205ENST00000483847 NWD1Q149M9 1564 aa17.28■□□□□ 0.36
SMARCC1-205ENST00000483847 PHLPP1O60346 1717 aa17.27■□□□□ 0.35
SMARCC1-205ENST00000483847 NKTRP30414 1462 aaKnown RBP17.25■□□□□ 0.35
SMARCC1-205ENST00000483847 KANK1Q14678 1352 aa17.25■□□□□ 0.35
SMARCC1-205ENST00000483847 ADGRB3O60242 1522 aa17.24■□□□□ 0.35
SMARCC1-205ENST00000483847 LMTK2Q8IWU2 1503 aa17.24■□□□□ 0.35
SMARCC1-205ENST00000483847 SLAIN2Q9P270 581 aa17.23■□□□□ 0.35
SMARCC1-205ENST00000483847 NOS1P29475 1434 aa17.22■□□□□ 0.35
SMARCC1-205ENST00000483847 PTPN23Q9H3S7 1636 aa17.22■□□□□ 0.35
SMARCC1-205ENST00000483847 MSH6P52701 1360 aa17.22■□□□□ 0.35
SMARCC1-205ENST00000483847 JCADQ9P266 1359 aa17.22■□□□□ 0.35
SMARCC1-205ENST00000483847 DAPK1P53355 1430 aa17.21■□□□□ 0.35
SMARCC1-205ENST00000483847 COL16A1Q07092 1604 aaPredicted RBP17.21■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms