RNA–Protein interactions for RNA: ENST00000483847.1

SMARCC1-205, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1, humanhuman

TSL 2

Gene SMARCC1, Length 804 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCC1-205ENST00000483847 NISCHQ9Y2I1 1504 aa27.94■■■□□ 2.06
SMARCC1-205ENST00000483847 ABCC9O60706 1549 aa25.66■■□□□ 1.7
SMARCC1-205ENST00000483847 CCDC180Q9P1Z9 1646 aa25.23■■□□□ 1.63
SMARCC1-205ENST00000483847 DNAJC5BQ9UF47 199 aa24.46■■□□□ 1.51
SMARCC1-205ENST00000483847 RB1CC1Q8TDY2 1594 aa24.2■■□□□ 1.46
SMARCC1-205ENST00000483847 NACADO15069 1562 aa23.93■■□□□ 1.42
SMARCC1-205ENST00000483847 PABPN1Q86U42 306 aaKnown RBP eCLIP23.83■■□□□ 1.41
SMARCC1-205ENST00000483847 DCAF8L2P0C7V8 631 aa23.75■■□□□ 1.39
SMARCC1-205ENST00000483847 UNC13AQ9UPW8 1703 aa23.72■■□□□ 1.39
SMARCC1-205ENST00000483847 BICRAQ9NZM4 1560 aa23.57■■□□□ 1.36
SMARCC1-205ENST00000483847 MYO15BQ96JP2 1530 aa23.45■■□□□ 1.34
SMARCC1-205ENST00000483847 CC2D2AQ9P2K1 1620 aa23.15■■□□□ 1.3
SMARCC1-205ENST00000483847 CECR2Q9BXF3 1484 aa23.13■■□□□ 1.29
SMARCC1-205ENST00000483847 SHROOM4Q9ULL8 1493 aa23.11■■□□□ 1.29
SMARCC1-205ENST00000483847 ZCCHC6Q5VYS8 1495 aaKnown RBP23.07■■□□□ 1.28
SMARCC1-205ENST00000483847 DCAF1Q9Y4B6 1507 aa23.02■■□□□ 1.28
SMARCC1-205ENST00000483847 SCRIBQ14160 1630 aa23.01■■□□□ 1.27
SMARCC1-205ENST00000483847 EIF4G1Q04637 1599 aaKnown RBP23■■□□□ 1.27
SMARCC1-205ENST00000483847 DNAJC5Q9H3Z4 198 aa22.68■■□□□ 1.22
SMARCC1-205ENST00000483847 CUX2O14529 1486 aa22.22■■□□□ 1.15
SMARCC1-205ENST00000483847 ERCC6Q03468 1493 aa22.14■■□□□ 1.13
SMARCC1-205ENST00000483847 NCAPD3P42695 1498 aa22.11■■□□□ 1.13
SMARCC1-205ENST00000483847 ATAD2BQ9ULI0 1458 aa22■■□□□ 1.11
SMARCC1-205ENST00000483847 NESP48681 1621 aa21.95■■□□□ 1.1
SMARCC1-205ENST00000483847 HMGXB3Q12766 1538 aa21.9■■□□□ 1.1
SMARCC1-205ENST00000483847 SMARCA4P51532 1647 aa21.89■■□□□ 1.09
SMARCC1-205ENST00000483847 SMARCA2P51531 1590 aa21.89■■□□□ 1.09
SMARCC1-205ENST00000483847 THOC2Q8NI27 1593 aaKnown RBP21.79■■□□□ 1.08
SMARCC1-205ENST00000483847 BAZ1BQ9UIG0 1483 aaKnown RBP21.76■■□□□ 1.07
SMARCC1-205ENST00000483847 BAZ1AQ9NRL2 1556 aaPredicted RBP21.7■■□□□ 1.06
SMARCC1-205ENST00000483847 LAMC3Q9Y6N6 1575 aa21.67■■□□□ 1.06
SMARCC1-205ENST00000483847 PEG3Q9GZU2 1588 aa21.66■■□□□ 1.06
SMARCC1-205ENST00000483847 KIF21AQ7Z4S6 1674 aa21.65■■□□□ 1.06
SMARCC1-205ENST00000483847 MROH2BQ7Z745 1585 aa21.56■■□□□ 1.04
SMARCC1-205ENST00000483847 TRIM41Q8WV44 630 aa21.54■■□□□ 1.04
SMARCC1-205ENST00000483847 PDS5BQ9NTI5 1447 aa21.54■■□□□ 1.04
SMARCC1-205ENST00000483847 MRC2Q9UBG0 1479 aa21.41■■□□□ 1.02
SMARCC1-205ENST00000483847 CADPSQ9ULU8 1353 aa21.41■■□□□ 1.02
SMARCC1-205ENST00000483847 WDR62O43379 1518 aa21.38■■□□□ 1.01
SMARCC1-205ENST00000483847 WIZO95785 1651 aa21.29■■□□□ 1
SMARCC1-205ENST00000483847 CEP164Q9UPV0 1460 aa21.24■□□□□ 0.99
SMARCC1-205ENST00000483847 FANCD2Q9BXW9 1451 aa21.19■□□□□ 0.98
SMARCC1-205ENST00000483847 OSCARQ8IYS5 282 aa21.13■□□□□ 0.97
SMARCC1-205ENST00000483847 CFTRP13569 1480 aa21.1■□□□□ 0.97
SMARCC1-205ENST00000483847 URB2Q14146 1524 aaKnown RBP21.07■□□□□ 0.96
SMARCC1-205ENST00000483847 RIMBP3CA6NJZ7 1639 aa20.96■□□□□ 0.95
SMARCC1-205ENST00000483847 RIMBP3BA6NNM3 1639 aa20.96■□□□□ 0.95
SMARCC1-205ENST00000483847 RIMBP3Q9UFD9 1639 aa20.96■□□□□ 0.95
SMARCC1-205ENST00000483847 TOP2AP11388 1531 aaKnown RBP20.95■□□□□ 0.94
SMARCC1-205ENST00000483847 RSF1Q96T23 1441 aaPredicted RBP20.95■□□□□ 0.94
SMARCC1-205ENST00000483847 ZNF608Q9ULD9 1512 aaPredicted RBP20.88■□□□□ 0.93
SMARCC1-205ENST00000483847 PRDM2Q13029 1718 aa20.86■□□□□ 0.93
SMARCC1-205ENST00000483847 ARHGEF11O15085 1522 aa20.83■□□□□ 0.93
SMARCC1-205ENST00000483847 IFT140Q96RY7 1462 aa20.81■□□□□ 0.92
SMARCC1-205ENST00000483847 TOPBP1Q92547 1522 aa20.75■□□□□ 0.91
SMARCC1-205ENST00000483847 CCDC88BA6NC98 1476 aa20.74■□□□□ 0.91
SMARCC1-205ENST00000483847 EIF4G3O43432 1585 aaKnown RBP20.73■□□□□ 0.91
SMARCC1-205ENST00000483847 CYB5RLQ6IPT4 315 aa20.7■□□□□ 0.9
SMARCC1-205ENST00000483847 CHD1O14646 1710 aa20.67■□□□□ 0.9
SMARCC1-205ENST00000483847 DNMBPQ6XZF7 1577 aa20.63■□□□□ 0.89
SMARCC1-205ENST00000483847 AQRO60306 1485 aaKnown RBP eCLIP20.63■□□□□ 0.894e-6■■■□□ 17.6
SMARCC1-205ENST00000483847 TARBP1Q13395 1621 aaKnown RBP20.62■□□□□ 0.89
SMARCC1-205ENST00000483847 ABCC8Q09428 1581 aa20.62■□□□□ 0.89
SMARCC1-205ENST00000483847 ARAP1Q96P48 1450 aa20.62■□□□□ 0.89
SMARCC1-205ENST00000483847 TRHP20396 242 aaPredicted RBP20.59■□□□□ 0.89
SMARCC1-205ENST00000483847 FBLN2P98095 1184 aa20.55■□□□□ 0.88
SMARCC1-205ENST00000483847 POLA1P09884 1462 aaPredicted RBP20.52■□□□□ 0.88
SMARCC1-205ENST00000483847 RAD54L2Q9Y4B4 1467 aa20.48■□□□□ 0.87
SMARCC1-205ENST00000483847 TDRD9Q8NDG6 1382 aaKnown RBP20.44■□□□□ 0.86
SMARCC1-205ENST00000483847 CLASP1Q7Z460 1538 aa20.41■□□□□ 0.86
SMARCC1-205ENST00000483847 SOGA1O94964 1423 aa20.4■□□□□ 0.86
SMARCC1-205ENST00000483847 SNAPC4Q5SXM2 1469 aa20.39■□□□□ 0.85
SMARCC1-205ENST00000483847 FGD5Q6ZNL6 1462 aa20.34■□□□□ 0.85
SMARCC1-205ENST00000483847 SYNJ1O43426 1573 aa20.32■□□□□ 0.84
SMARCC1-205ENST00000483847 CHMP7Q8WUX9 453 aaPredicted RBP20.31■□□□□ 0.84
SMARCC1-205ENST00000483847 WDR97A6NE52 1622 aa20.31■□□□□ 0.84
SMARCC1-205ENST00000483847 MAGI1Q96QZ7 1491 aaPredicted RBP20.3■□□□□ 0.84
SMARCC1-205ENST00000483847 CUX1P39880 1505 aa20.27■□□□□ 0.84
SMARCC1-205ENST00000483847 GRIN2BQ13224 1484 aa20.26■□□□□ 0.83
SMARCC1-205ENST00000483847 SYNJ2O15056 1496 aa20.24■□□□□ 0.83
SMARCC1-205ENST00000483847 AEBP2Q6ZN18 517 aaPredicted RBP20.24■□□□□ 0.83
SMARCC1-205ENST00000483847 GAPVD1Q14C86 1478 aa20.2■□□□□ 0.82
SMARCC1-205ENST00000483847 PBRM1Q86U86 1689 aa20.19■□□□□ 0.82
SMARCC1-205ENST00000483847 ERCC6L2Q5T890 1561 aa20.11■□□□□ 0.81
SMARCC1-205ENST00000483847 ABCA5Q8WWZ7 1642 aa20.09■□□□□ 0.81
SMARCC1-205ENST00000483847 ABCA10Q8WWZ4 1543 aa20.07■□□□□ 0.8
SMARCC1-205ENST00000483847 GRIN2AQ12879 1464 aa20.02■□□□□ 0.8
SMARCC1-205ENST00000483847 CEP170Q5SW79 1584 aa20■□□□□ 0.79
SMARCC1-205ENST00000483847 ADAMTS12P58397 1594 aa19.97■□□□□ 0.79
SMARCC1-205ENST00000483847 NUP160Q12769 1436 aa19.96■□□□□ 0.79
SMARCC1-205ENST00000483847 SHROOM2Q13796 1616 aa19.94■□□□□ 0.78
SMARCC1-205ENST00000483847 KIF13AQ9H1H9 1805 aa19.9■□□□□ 0.78
SMARCC1-205ENST00000483847 WRNQ14191 1432 aaPredicted RBP eCLIP19.89■□□□□ 0.77
SMARCC1-205ENST00000483847 FHAD1B1AJZ9 1412 aa19.86■□□□□ 0.77
SMARCC1-205ENST00000483847 BIVM-ERCC5R4GMW8 1640 aa19.83■□□□□ 0.76
SMARCC1-205ENST00000483847 TOP2BQ02880 1626 aa19.82■□□□□ 0.76
SMARCC1-205ENST00000483847 PRG4Q92954 1404 aaPredicted RBP19.81■□□□□ 0.76
SMARCC1-205ENST00000483847 ERICH3Q5RHP9 1530 aa19.79■□□□□ 0.76
SMARCC1-205ENST00000483847 JPH4Q96JJ6 628 aa19.74■□□□□ 0.75
SMARCC1-205ENST00000483847 SUPT5HO00267 1087 aaKnown RBP19.73■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 111 ms