RNA–Protein interactions for RNA: ENST00000470268.1

SF3B1-208, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 2,003 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-208ENST00000470268 ABCA5Q8WWZ7 1642 aa7.81□□□□□ -1.16
SF3B1-208ENST00000470268 GAPVD1Q14C86 1478 aa7.81□□□□□ -1.16
SF3B1-208ENST00000470268 IGF1RP08069 1367 aa7.81□□□□□ -1.16
SF3B1-208ENST00000470268 ZNF316A6NFI3 1004 aaPredicted RBP7.8□□□□□ -1.16
SF3B1-208ENST00000470268 ARSIQ5FYB1 569 aa7.8□□□□□ -1.16
SF3B1-208ENST00000470268 RYDENQ9NUL5 291 aaKnown RBP7.8□□□□□ -1.16
SF3B1-208ENST00000470268 EIF4G3O43432 1585 aaKnown RBP7.8□□□□□ -1.16
SF3B1-208ENST00000470268 EEA1Q15075 1411 aa7.79□□□□□ -1.16
SF3B1-208ENST00000470268 GRIN2BQ13224 1484 aa7.77□□□□□ -1.17
SF3B1-208ENST00000470268 MFRPQ9BY79 579 aa7.77□□□□□ -1.17
SF3B1-208ENST00000470268 BCANQ96GW7 911 aa7.76□□□□□ -1.17
SF3B1-208ENST00000470268 ERICH3Q5RHP9 1530 aa7.76□□□□□ -1.17
SF3B1-208ENST00000470268 KIF3CO14782 793 aa7.76□□□□□ -1.17
SF3B1-208ENST00000470268 PBX2P40425 430 aa7.76□□□□□ -1.17
SF3B1-208ENST00000470268 SLC34A2O95436 690 aa7.75□□□□□ -1.17
SF3B1-208ENST00000470268 SNAPC4Q5SXM2 1469 aa7.75□□□□□ -1.17
SF3B1-208ENST00000470268 PRXQ9BXM0 1461 aa7.75□□□□□ -1.17
SF3B1-208ENST00000470268 CARMIL1Q5VZK9 1371 aa7.75□□□□□ -1.17
SF3B1-208ENST00000470268 PBRM1Q86U86 1689 aa7.74□□□□□ -1.17
SF3B1-208ENST00000470268 LOC105371045A0A1W2PR82 267 aa7.74□□□□□ -1.17
SF3B1-208ENST00000470268 C2orf72A6NCS6 295 aa7.73□□□□□ -1.17
SF3B1-208ENST00000470268 ANKRD13DQ6ZTN6 518 aa7.73□□□□□ -1.17
SF3B1-208ENST00000470268 RAPGEF2Q9Y4G8 1499 aa7.73□□□□□ -1.17
SF3B1-208ENST00000470268 LSM11P83369 360 aaKnown RBP eCLIP7.73□□□□□ -1.17
SF3B1-208ENST00000470268 TMC2Q8TDI7 906 aa7.72□□□□□ -1.17
SF3B1-208ENST00000470268 KHSRPQ92945 711 aaKnown RBP eCLIP7.72□□□□□ -1.175e-10■■■■■ 35.9
SF3B1-208ENST00000470268 FHAD1B1AJZ9 1412 aa7.72□□□□□ -1.17
SF3B1-208ENST00000470268 MAGI1Q96QZ7 1491 aaPredicted RBP7.72□□□□□ -1.17
SF3B1-208ENST00000470268 ADAMTS12P58397 1594 aa7.72□□□□□ -1.17
SF3B1-208ENST00000470268 CUL7Q14999 1698 aa7.7□□□□□ -1.18
SF3B1-208ENST00000470268 PCDHGA4Q9Y5G9 962 aa7.7□□□□□ -1.18
SF3B1-208ENST00000470268 KIF21BO75037 1637 aa7.7□□□□□ -1.18
SF3B1-208ENST00000470268 SYNJ2O15056 1496 aa7.7□□□□□ -1.18
SF3B1-208ENST00000470268 PSDA5PKW4 1024 aaPredicted RBP7.69□□□□□ -1.18
SF3B1-208ENST00000470268 NUDT7P0C024 238 aa7.69□□□□□ -1.18
SF3B1-208ENST00000470268 CHMP7Q8WUX9 453 aaPredicted RBP7.69□□□□□ -1.18
SF3B1-208ENST00000470268 GRIN2AQ12879 1464 aa7.68□□□□□ -1.18
SF3B1-208ENST00000470268 GOLGA3Q08378 1498 aa7.68□□□□□ -1.18
SF3B1-208ENST00000470268 LHX6Q9UPM6 363 aa7.67□□□□□ -1.18
SF3B1-208ENST00000470268 UBTFP17480 764 aaKnown RBP7.66□□□□□ -1.18
SF3B1-208ENST00000470268 NUP160Q12769 1436 aa7.64□□□□□ -1.19
SF3B1-208ENST00000470268 CEP170Q5SW79 1584 aa7.64□□□□□ -1.19
SF3B1-208ENST00000470268 CHD1O14646 1710 aa7.64□□□□□ -1.19
SF3B1-208ENST00000470268 TNIKQ9UKE5 1360 aa7.64□□□□□ -1.19
SF3B1-208ENST00000470268 ARHGAP33O14559 1287 aa7.62□□□□□ -1.19
SF3B1-208ENST00000470268 PTCD2Q8WV60 388 aaKnown RBP7.62□□□□□ -1.19
SF3B1-208ENST00000470268 HCSTQ9UBK5 93 aa7.62□□□□□ -1.19
SF3B1-208ENST00000470268 RANGAP1P46060 587 aaPredicted RBP7.61□□□□□ -1.19
SF3B1-208ENST00000470268 KIAA0586Q9BVV6 1533 aa7.61□□□□□ -1.19
SF3B1-208ENST00000470268 TK2O00142 265 aa7.61□□□□□ -1.19
SF3B1-208ENST00000470268 POTEEQ6S8J3 1075 aa7.61□□□□□ -1.19
SF3B1-208ENST00000470268 TBC1D12O60347 775 aa7.6□□□□□ -1.19
SF3B1-208ENST00000470268 PPP1R37O75864 691 aa7.59□□□□□ -1.19
SF3B1-208ENST00000470268 CEP162Q5TB80 1403 aa7.59□□□□□ -1.19
SF3B1-208ENST00000470268 KDM4FA0A1W2PPD8 638 aa7.59□□□□□ -1.19
SF3B1-208ENST00000470268 FOXK1P85037 733 aa7.59□□□□□ -1.19
SF3B1-208ENST00000470268 ADGRD1Q6QNK2 874 aa7.59□□□□□ -1.19
SF3B1-208ENST00000470268 AXIN2Q9Y2T1 843 aa7.59□□□□□ -1.19
SF3B1-208ENST00000470268 CLASP1Q7Z460 1538 aa7.59□□□□□ -1.2
SF3B1-208ENST00000470268 IQGAP2Q13576 1575 aa7.58□□□□□ -1.2
SF3B1-208ENST00000470268 JPH4Q96JJ6 628 aa7.58□□□□□ -1.2
SF3B1-208ENST00000470268 CTTNBP2Q8WZ74 1663 aa7.58□□□□□ -1.2
SF3B1-208ENST00000470268 NBR1Q14596 966 aa7.57□□□□□ -1.2
SF3B1-208ENST00000470268 PLPP6Q8IY26 295 aa7.57□□□□□ -1.2
SF3B1-208ENST00000470268 GPHNQ9NQX3 736 aaPredicted RBP7.57□□□□□ -1.2
SF3B1-208ENST00000470268 CLIP1P30622 1438 aa7.57□□□□□ -1.2
SF3B1-208ENST00000470268 PPP4R3BQ5MIZ7 849 aa7.56□□□□□ -1.2
SF3B1-208ENST00000470268 ARHGAP35Q9NRY4 1499 aa7.56□□□□□ -1.2
SF3B1-208ENST00000470268 UGGT2Q9NYU1 1516 aa7.56□□□□□ -1.2
SF3B1-208ENST00000470268 CADPS2Q86UW7 1296 aa7.56□□□□□ -1.2
SF3B1-208ENST00000470268 P3H3Q8IVL6 736 aa7.56□□□□□ -1.2
SF3B1-208ENST00000470268 PLA2G2EQ9NZK7 142 aa7.56□□□□□ -1.2
SF3B1-208ENST00000470268 DISP1Q96F81 1524 aa7.55□□□□□ -1.2
SF3B1-208ENST00000470268 ERCC6L2Q5T890 1561 aa7.54□□□□□ -1.2
SF3B1-208ENST00000470268 PRG4Q92954 1404 aaPredicted RBP7.54□□□□□ -1.2
SF3B1-208ENST00000470268 KCNH8Q96L42 1107 aa7.54□□□□□ -1.2
SF3B1-208ENST00000470268 SHROOM2Q13796 1616 aa7.54□□□□□ -1.2
SF3B1-208ENST00000470268 ARAP1Q96P48 1450 aa7.54□□□□□ -1.2
SF3B1-208ENST00000470268 STAC3Q96MF2 364 aa7.54□□□□□ -1.2
SF3B1-208ENST00000470268 SAMD9Q5K651 1589 aa7.53□□□□□ -1.2
SF3B1-208ENST00000470268 FHOD3Q2V2M9 1422 aa7.53□□□□□ -1.2
SF3B1-208ENST00000470268 HRO43593 1189 aa7.52□□□□□ -1.2
SF3B1-208ENST00000470268 WDR70Q9NW82 654 aa7.52□□□□□ -1.2
SF3B1-208ENST00000470268 KIAA0556O60303 1618 aa7.52□□□□□ -1.21
SF3B1-208ENST00000470268 EFCAB5A4FU69 1503 aa7.52□□□□□ -1.21
SF3B1-208ENST00000470268 DSG2Q14126 1118 aa7.51□□□□□ -1.21
SF3B1-208ENST00000470268 DMRTA1Q5VZB9 504 aa7.51□□□□□ -1.21
SF3B1-208ENST00000470268 CARMIL2Q6F5E8 1435 aa7.5□□□□□ -1.21
SF3B1-208ENST00000470268 TTBK1Q5TCY1 1321 aaPredicted RBP7.5□□□□□ -1.21
SF3B1-208ENST00000470268 PSEN2P49810 448 aa7.49□□□□□ -1.21
SF3B1-208ENST00000470268 ARHGEF11O15085 1522 aa7.48□□□□□ -1.21
SF3B1-208ENST00000470268 PRKCSHP14314 528 aaPredicted RBP7.47□□□□□ -1.21
SF3B1-208ENST00000470268 OXER1Q8TDS5 423 aa7.47□□□□□ -1.21
SF3B1-208ENST00000470268 SLC4A5Q9BY07 1137 aa7.47□□□□□ -1.21
SF3B1-208ENST00000470268 PTPRGP23470 1445 aa7.47□□□□□ -1.21
SF3B1-208ENST00000470268 VPS8Q8N3P4 1428 aa7.47□□□□□ -1.21
SF3B1-208ENST00000470268 TPRNQ4KMQ1 711 aa7.47□□□□□ -1.21
SF3B1-208ENST00000470268 PLB1Q6P1J6 1458 aa7.46□□□□□ -1.21
SF3B1-208ENST00000470268 KCNV2Q8TDN2 545 aa7.46□□□□□ -1.22
SF3B1-208ENST00000470268 FMN1Q68DA7 1419 aa7.46□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms