RNA–Protein interactions for RNA: ENST00000470268.1

SF3B1-208, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 2,003 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-208ENST00000470268 AEBP2Q6ZN18 517 aaPredicted RBP18.05■□□□□ 0.48
SF3B1-208ENST00000470268 CHIC1Q5VXU3 224 aa17.11■□□□□ 0.33
SF3B1-208ENST00000470268 SENP3Q9H4L4 574 aaPredicted RBP15.53■□□□□ 0.08
SF3B1-208ENST00000470268 PHF23Q9BUL5 403 aaPredicted RBP15.26■□□□□ 0.03
SF3B1-208ENST00000470268 FOXD1Q16676 465 aa14.41□□□□□ -0.1
SF3B1-208ENST00000470268 PLPPR3Q6T4P5 718 aa13.64□□□□□ -0.23
SF3B1-208ENST00000470268 MSH5O43196 834 aa13.64□□□□□ -0.23
SF3B1-208ENST00000470268 PIAS4Q8N2W9 510 aaPredicted RBP13.46□□□□□ -0.26
SF3B1-208ENST00000470268 POTEDQ86YR6 584 aa13.42□□□□□ -0.26
SF3B1-208ENST00000470268 PPP6R1Q9UPN7 881 aa13.33□□□□□ -0.28
SF3B1-208ENST00000470268 ADRA2BP18089 450 aa13.3□□□□□ -0.28
SF3B1-208ENST00000470268 SCAF1Q9H7N4 1312 aaKnown RBP12.33□□□□□ -0.44
SF3B1-208ENST00000470268 DMRT2Q9Y5R5 561 aa12.28□□□□□ -0.44
SF3B1-208ENST00000470268 MAPK8IP2Q13387 824 aaPredicted RBP12.23□□□□□ -0.45
SF3B1-208ENST00000470268 PPP4R3CPQ6ZMV5 832 aa11.91□□□□□ -0.5
SF3B1-208ENST00000470268 HOXD11P31277 338 aaPredicted RBP11.79□□□□□ -0.52
SF3B1-208ENST00000470268 CNKSR2Q8WXI2 1034 aa11.76□□□□□ -0.53
SF3B1-208ENST00000470268 DCAF8L1A6NGE4 600 aa11.73□□□□□ -0.53
SF3B1-208ENST00000470268 CACNB1Q02641 598 aaPredicted RBP11.73□□□□□ -0.53
SF3B1-208ENST00000470268 RNF216Q9NWF9 866 aaPredicted RBP11.68□□□□□ -0.54
SF3B1-208ENST00000470268 RNF39Q9H2S5 420 aa11.57□□□□□ -0.56
SF3B1-208ENST00000470268 DNAJC5BQ9UF47 199 aa11.5□□□□□ -0.57
SF3B1-208ENST00000470268 NCBP3Q53F19 620 aaKnown RBP11.5□□□□□ -0.57
SF3B1-208ENST00000470268 C1QBPQ07021 282 aaKnown RBP11.45□□□□□ -0.58
SF3B1-208ENST00000470268 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.23□□□□□ -0.613e-15■□□□□ 11.3
SF3B1-208ENST00000470268 NPM3O75607 178 aaKnown RBP11.22□□□□□ -0.61
SF3B1-208ENST00000470268 NISCHQ9Y2I1 1504 aa11.08□□□□□ -0.64
SF3B1-208ENST00000470268 U3KPZ7 1027 aaPredicted RBP10.93□□□□□ -0.66
SF3B1-208ENST00000470268 KCNA4P22459 653 aa10.86□□□□□ -0.67
SF3B1-208ENST00000470268 CAPN15O75808 1086 aa10.82□□□□□ -0.68
SF3B1-208ENST00000470268 DSG3P32926 999 aa10.78□□□□□ -0.68
SF3B1-208ENST00000470268 APLP2Q06481 763 aa10.78□□□□□ -0.68
SF3B1-208ENST00000470268 SPINK5Q9NQ38 1064 aaPredicted RBP10.77□□□□□ -0.68
SF3B1-208ENST00000470268 SLC4A2P04920 1241 aa10.73□□□□□ -0.69
SF3B1-208ENST00000470268 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.7□□□□□ -0.7
SF3B1-208ENST00000470268 HNRNPUL2Q1KMD3 747 aaKnown RBP10.7□□□□□ -0.7
SF3B1-208ENST00000470268 ZNF219Q9P2Y4 722 aaPredicted RBP10.65□□□□□ -0.71
SF3B1-208ENST00000470268 SAMD1Q6SPF0 538 aaPredicted RBP10.61□□□□□ -0.71
SF3B1-208ENST00000470268 TRHP20396 242 aaPredicted RBP10.6□□□□□ -0.71
SF3B1-208ENST00000470268 POTEHQ6S545 545 aa10.51□□□□□ -0.73
SF3B1-208ENST00000470268 ABCB7O75027 752 aa10.5□□□□□ -0.73
SF3B1-208ENST00000470268 MYCNP04198 464 aaPredicted RBP10.45□□□□□ -0.74
SF3B1-208ENST00000470268 RBM42Q9BTD8 480 aaKnown RBP10.38□□□□□ -0.75
SF3B1-208ENST00000470268 SLC4A1APQ9BWU0 796 aaKnown RBP10.33□□□□□ -0.76
SF3B1-208ENST00000470268 EHMT2Q96KQ7 1210 aa10.32□□□□□ -0.76
SF3B1-208ENST00000470268 POLA2Q14181 598 aa10.29□□□□□ -0.76
SF3B1-208ENST00000470268 FOXD4L1Q9NU39 408 aa10.26□□□□□ -0.77
SF3B1-208ENST00000470268 ZBTB12Q9Y330 459 aaPredicted RBP10.19□□□□□ -0.78
SF3B1-208ENST00000470268 CHRDL2Q6WN34 429 aa10.12□□□□□ -0.79
SF3B1-208ENST00000470268 CSRNP3Q8WYN3 585 aa10.12□□□□□ -0.79
SF3B1-208ENST00000470268 AKT1S1Q96B36 256 aa10.09□□□□□ -0.79
SF3B1-208ENST00000470268 ATF5Q9Y2D1 282 aaPredicted RBP10.09□□□□□ -0.79
SF3B1-208ENST00000470268 ATXN8OSP0DMR3 200 aa10.02□□□□□ -0.81
SF3B1-208ENST00000470268 ZBTB22O15209 634 aa9.95□□□□□ -0.82
SF3B1-208ENST00000470268 REM2Q8IYK8 340 aaPredicted RBP9.94□□□□□ -0.82
SF3B1-208ENST00000470268 OSCARQ8IYS5 282 aa9.94□□□□□ -0.82
SF3B1-208ENST00000470268 FBLN2P98095 1184 aa9.85□□□□□ -0.83
SF3B1-208ENST00000470268 PIP4P2Q8N4L2 257 aa9.84□□□□□ -0.83
SF3B1-208ENST00000470268 SPDYE2BA6NHP3 402 aa9.82□□□□□ -0.84
SF3B1-208ENST00000470268 SPDYE6P0CI01 402 aa9.82□□□□□ -0.84
SF3B1-208ENST00000470268 SPDYE2Q495Y8 402 aa9.82□□□□□ -0.84
SF3B1-208ENST00000470268 PITPNM1O00562 1244 aa9.82□□□□□ -0.84
SF3B1-208ENST00000470268 SP7Q8TDD2 431 aaPredicted RBP9.82□□□□□ -0.84
SF3B1-208ENST00000470268 FXR2P51116 673 aaKnown RBP eCLIP9.8□□□□□ -0.842e-10■■□□□ 12.3
SF3B1-208ENST00000470268 HAX1O00165 279 aa9.71□□□□□ -0.86
SF3B1-208ENST00000470268 CCDC180Q9P1Z9 1646 aa9.69□□□□□ -0.86
SF3B1-208ENST00000470268 SPDYE1Q8NFV5 336 aaPredicted RBP9.68□□□□□ -0.86
SF3B1-208ENST00000470268 MKRN4PQ13434 485 aaPredicted RBP9.65□□□□□ -0.87
SF3B1-208ENST00000470268 ZNF692Q9BU19 519 aaPredicted RBP9.65□□□□□ -0.87
SF3B1-208ENST00000470268 SSUH2Q9Y2M2 353 aa9.64□□□□□ -0.87
SF3B1-208ENST00000470268 CLEC11AQ9Y240 323 aa9.6□□□□□ -0.87
SF3B1-208ENST00000470268 PRKAR2AP13861 404 aaKnown RBP9.58□□□□□ -0.88
SF3B1-208ENST00000470268 EVX2Q03828 476 aa9.49□□□□□ -0.89
SF3B1-208ENST00000470268 C19orf67A6NJJ6 358 aa9.49□□□□□ -0.89
SF3B1-208ENST00000470268 PABPN1Q86U42 306 aaKnown RBP eCLIP9.48□□□□□ -0.89
SF3B1-208ENST00000470268 PRR29P0C7W0 189 aa9.46□□□□□ -0.89
SF3B1-208ENST00000470268 CHADLQ6NUI6 762 aa9.39□□□□□ -0.91
SF3B1-208ENST00000470268 ABCC9O60706 1549 aa9.38□□□□□ -0.91
SF3B1-208ENST00000470268 GABBR2O75899 941 aa9.36□□□□□ -0.91
SF3B1-208ENST00000470268 CLCN6P51797 869 aa9.32□□□□□ -0.92
SF3B1-208ENST00000470268 FARP1Q9Y4F1 1045 aaPredicted RBP9.31□□□□□ -0.92
SF3B1-208ENST00000470268 STAG3Q9UJ98 1225 aa9.3□□□□□ -0.92
SF3B1-208ENST00000470268 ZCCHC6Q5VYS8 1495 aaKnown RBP9.27□□□□□ -0.93
SF3B1-208ENST00000470268 CD44P16070 742 aaKnown RBP9.27□□□□□ -0.93
SF3B1-208ENST00000470268 DCAF8L2P0C7V8 631 aa9.21□□□□□ -0.94
SF3B1-208ENST00000470268 LHX8Q68G74 356 aa9.21□□□□□ -0.94
SF3B1-208ENST00000470268 SPDYE4A6NLX3 237 aa9.19□□□□□ -0.94
SF3B1-208ENST00000470268 CREBZFQ9NS37 354 aa9.17□□□□□ -0.94
SF3B1-208ENST00000470268 ZNF579Q8NAF0 562 aaKnown RBP9.15□□□□□ -0.94
SF3B1-208ENST00000470268 DCAF1Q9Y4B6 1507 aa9.14□□□□□ -0.95
SF3B1-208ENST00000470268 ZRANB1Q9UGI0 708 aa9.12□□□□□ -0.95
SF3B1-208ENST00000470268 FKBP8Q14318 412 aa9.11□□□□□ -0.95
SF3B1-208ENST00000470268 DCBLD2Q96PD2 775 aa9.11□□□□□ -0.95
SF3B1-208ENST00000470268 POTEIP0CG38 1075 aa9.1□□□□□ -0.95
SF3B1-208ENST00000470268 MYO15BQ96JP2 1530 aa9.1□□□□□ -0.95
SF3B1-208ENST00000470268 PAK3O75914 559 aaPredicted RBP9.09□□□□□ -0.95
SF3B1-208ENST00000470268 NACADO15069 1562 aa9.09□□□□□ -0.95
SF3B1-208ENST00000470268 NPM1P06748 294 aaKnown RBP eCLIP9.09□□□□□ -0.95
SF3B1-208ENST00000470268 RB1CC1Q8TDY2 1594 aa9.05□□□□□ -0.96
SF3B1-208ENST00000470268 GALR2O43603 387 aaPredicted RBP8.98□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms