RNA–Protein interactions for RNA: ENST00000468949.1

HDAC6-216, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-216ENST00000468949 CHIC2Q9UKJ5 165 aa12.19□□□□□ -0.46
HDAC6-216ENST00000468949 A2MP01023 1474 aa12.17□□□□□ -0.46
HDAC6-216ENST00000468949 PCGF6Q9BYE7 350 aa12.17□□□□□ -0.46
HDAC6-216ENST00000468949 RTEL1-TNFRSF6BF6WH68 1400 aa12.17□□□□□ -0.46
HDAC6-216ENST00000468949 MAST1Q9Y2H9 1570 aa12.17□□□□□ -0.46
HDAC6-216ENST00000468949 MROH2AA6NES4 1674 aa12.16□□□□□ -0.46
HDAC6-216ENST00000468949 ROCK1Q13464 1354 aa12.16□□□□□ -0.46
HDAC6-216ENST00000468949 RNF216Q9NWF9 866 aaPredicted RBP12.15□□□□□ -0.46
HDAC6-216ENST00000468949 KIF15Q9NS87 1388 aa12.15□□□□□ -0.46
HDAC6-216ENST00000468949 ADGRL2O95490 1459 aa12.14□□□□□ -0.47
HDAC6-216ENST00000468949 CNTLNQ9NXG0 1405 aa12.14□□□□□ -0.47
HDAC6-216ENST00000468949 PREX1Q8TCU6 1659 aa12.14□□□□□ -0.47
HDAC6-216ENST00000468949 MLECQ14165 292 aa12.14□□□□□ -0.47
HDAC6-216ENST00000468949 RRP7BPQ9NSQ0 103 aa12.14□□□□□ -0.47
HDAC6-216ENST00000468949 C3P01024 1663 aa12.13□□□□□ -0.47
HDAC6-216ENST00000468949 PTPRKQ15262 1439 aa12.13□□□□□ -0.47
HDAC6-216ENST00000468949 LMTK3Q96Q04 1460 aa12.13□□□□□ -0.47
HDAC6-216ENST00000468949 FAM135AQ9P2D6 1515 aa12.12□□□□□ -0.47
HDAC6-216ENST00000468949 HFM1A2PYH4 1435 aa12.11□□□□□ -0.47
HDAC6-216ENST00000468949 NCOA1Q15788 1441 aa12.11□□□□□ -0.47
HDAC6-216ENST00000468949 EIF2AK4Q9P2K8 1649 aaKnown RBP12.11□□□□□ -0.47
HDAC6-216ENST00000468949 DUOX2Q9NRD8 1548 aa12.11□□□□□ -0.47
HDAC6-216ENST00000468949 CLTCQ00610 1675 aaKnown RBP12.1□□□□□ -0.47
HDAC6-216ENST00000468949 GCC2Q8IWJ2 1684 aa12.1□□□□□ -0.47
HDAC6-216ENST00000468949 ERBINQ96RT1 1412 aa12.09□□□□□ -0.47
HDAC6-216ENST00000468949 SETD5Q9C0A6 1442 aa12.09□□□□□ -0.47
HDAC6-216ENST00000468949 ANKRD50Q9ULJ7 1429 aa12.09□□□□□ -0.47
HDAC6-216ENST00000468949 RNF17Q9BXT8 1623 aaKnown RBP12.08□□□□□ -0.48
HDAC6-216ENST00000468949 KDM5DQ9BY66 1539 aa12.08□□□□□ -0.48
HDAC6-216ENST00000468949 NAIPQ13075 1403 aa12.08□□□□□ -0.48
HDAC6-216ENST00000468949 ZC3H13Q5T200 1668 aaKnown RBP12.07□□□□□ -0.48
HDAC6-216ENST00000468949 ESF1Q9H501 851 aaKnown RBP12.07□□□□□ -0.48
HDAC6-216ENST00000468949 DHX29Q7Z478 1369 aaKnown RBP12.06□□□□□ -0.48
HDAC6-216ENST00000468949 ACIN1Q9UKV3 1341 aaKnown RBP12.06□□□□□ -0.48
HDAC6-216ENST00000468949 NPATQ14207 1427 aa12.05□□□□□ -0.48
HDAC6-216ENST00000468949 UHRF1BP1Q6BDS2 1440 aa12.05□□□□□ -0.48
HDAC6-216ENST00000468949 MYO3AQ8NEV4 1616 aa12.05□□□□□ -0.48
HDAC6-216ENST00000468949 ZNF142P52746 1687 aaPredicted RBP12.05□□□□□ -0.48
HDAC6-216ENST00000468949 RAB3GAP2Q9H2M9 1393 aa12.05□□□□□ -0.48
HDAC6-216ENST00000468949 HOXD11P31277 338 aaPredicted RBP12.04□□□□□ -0.48
HDAC6-216ENST00000468949 KIF3BO15066 747 aa12.03□□□□□ -0.48
HDAC6-216ENST00000468949 TRIM52Q96A61 297 aa12.03□□□□□ -0.48
HDAC6-216ENST00000468949 MROH1Q8NDA8 1641 aa12.03□□□□□ -0.48
HDAC6-216ENST00000468949 KANK1Q14678 1352 aa12.03□□□□□ -0.48
HDAC6-216ENST00000468949 PRDM15P57071 1507 aaPredicted RBP12.02□□□□□ -0.48
HDAC6-216ENST00000468949 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.01□□□□□ -0.491e-7■■□□□ 14.3
HDAC6-216ENST00000468949 DEPDC5O75140 1603 aa12□□□□□ -0.49
HDAC6-216ENST00000468949 CEBPAP49715 358 aaPredicted RBP12□□□□□ -0.49
HDAC6-216ENST00000468949 GGT6Q6P531 493 aa11.99□□□□□ -0.49
HDAC6-216ENST00000468949 PZPP20742 1482 aa11.99□□□□□ -0.49
HDAC6-216ENST00000468949 ABCC3O15438 1527 aa11.99□□□□□ -0.49
HDAC6-216ENST00000468949 CEP170BQ9Y4F5 1589 aaPredicted RBP11.99□□□□□ -0.49
HDAC6-216ENST00000468949 CAMSAP1Q5T5Y3 1602 aa11.99□□□□□ -0.49
HDAC6-216ENST00000468949 CEP152O94986 1710 aa11.99□□□□□ -0.49
HDAC6-216ENST00000468949 SETD1BQ9UPS6 1966 aaKnown RBP11.98□□□□□ -0.49
HDAC6-216ENST00000468949 UNC13BO14795 1591 aa11.98□□□□□ -0.49
HDAC6-216ENST00000468949 ZMYM3Q14202 1370 aa11.98□□□□□ -0.49
HDAC6-216ENST00000468949 NUP155O75694 1391 aa11.97□□□□□ -0.49
HDAC6-216ENST00000468949 HRCP23327 699 aa11.97□□□□□ -0.49
HDAC6-216ENST00000468949 HSPA2P54652 639 aa11.95□□□□□ -0.5
HDAC6-216ENST00000468949 WASHC2CQ9Y4E1 1318 aa11.94□□□□□ -0.5
HDAC6-216ENST00000468949 SPATA31D1Q6ZQQ2 1576 aa11.94□□□□□ -0.5
HDAC6-216ENST00000468949 STRCQ7RTU9 1775 aa11.94□□□□□ -0.5
HDAC6-216ENST00000468949 ZBTB22O15209 634 aa11.93□□□□□ -0.5
HDAC6-216ENST00000468949 IQGAP3Q86VI3 1631 aa11.93□□□□□ -0.5
HDAC6-216ENST00000468949 VWDEQ8N2E2 1590 aa11.92□□□□□ -0.5
HDAC6-216ENST00000468949 A2ML1A8K2U0 1454 aa11.92□□□□□ -0.5
HDAC6-216ENST00000468949 PLA2R1Q13018 1463 aa11.92□□□□□ -0.5
HDAC6-216ENST00000468949 TNRQ92752 1358 aa11.92□□□□□ -0.5
HDAC6-216ENST00000468949 ERVK-7P63135 1459 aa11.91□□□□□ -0.5
HDAC6-216ENST00000468949 NLRP1Q9C000 1473 aa11.91□□□□□ -0.5
HDAC6-216ENST00000468949 CCER1Q8TC90 406 aaPredicted RBP11.91□□□□□ -0.5
HDAC6-216ENST00000468949 POLR1AO95602 1720 aaPredicted RBP11.91□□□□□ -0.5
HDAC6-216ENST00000468949 EFCAB6Q5THR3 1501 aa11.91□□□□□ -0.5
HDAC6-216ENST00000468949 LMTK2Q8IWU2 1503 aa11.91□□□□□ -0.5
HDAC6-216ENST00000468949 MPHOSPH9Q99550 1183 aa11.89□□□□□ -0.51
HDAC6-216ENST00000468949 TET3O43151 1660 aa11.89□□□□□ -0.51
HDAC6-216ENST00000468949 ARHGAP31Q2M1Z3 1444 aa11.88□□□□□ -0.51
HDAC6-216ENST00000468949 PTPRTO14522 1441 aa11.87□□□□□ -0.51
HDAC6-216ENST00000468949 PKD2Q13563 968 aa11.87□□□□□ -0.51
HDAC6-216ENST00000468949 DHX57Q6P158 1386 aaKnown RBP11.87□□□□□ -0.51
HDAC6-216ENST00000468949 UGGT1Q9NYU2 1555 aa11.87□□□□□ -0.51
HDAC6-216ENST00000468949 RPRD2Q5VT52 1461 aaKnown RBP11.85□□□□□ -0.51
HDAC6-216ENST00000468949 NEURL4Q96JN8 1562 aa11.84□□□□□ -0.51
HDAC6-216ENST00000468949 UBR1Q8IWV7 1749 aa11.84□□□□□ -0.51
HDAC6-216ENST00000468949 KDM5AP29375 1690 aaKnown RBP11.84□□□□□ -0.51
HDAC6-216ENST00000468949 FBXO31Q5XUX0 539 aaPredicted RBP11.83□□□□□ -0.52
HDAC6-216ENST00000468949 SYNMO15061 1565 aa11.83□□□□□ -0.52
HDAC6-216ENST00000468949 E9PCH4 1651 aa11.82□□□□□ -0.52
HDAC6-216ENST00000468949 PIK3C2BO00750 1634 aa11.82□□□□□ -0.52
HDAC6-216ENST00000468949 CCDC144AA2RUR9 1427 aa11.81□□□□□ -0.52
HDAC6-216ENST00000468949 CLSPNQ9HAW4 1339 aa11.81□□□□□ -0.52
HDAC6-216ENST00000468949 FOXD4L1Q9NU39 408 aa11.8□□□□□ -0.52
HDAC6-216ENST00000468949 IQGAP1P46940 1657 aa11.8□□□□□ -0.52
HDAC6-216ENST00000468949 ADGRB3O60242 1522 aa11.8□□□□□ -0.52
HDAC6-216ENST00000468949 SPHKAPQ2M3C7 1700 aa11.8□□□□□ -0.52
HDAC6-216ENST00000468949 TRPM2O94759 1503 aa11.79□□□□□ -0.52
HDAC6-216ENST00000468949 NOS1P29475 1434 aa11.78□□□□□ -0.52
HDAC6-216ENST00000468949 SLIT1O75093 1534 aa11.78□□□□□ -0.52
HDAC6-216ENST00000468949 LTBP4Q8N2S1 1624 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 69 ms