RNA–Protein interactions for RNA: ENST00000459727.5

HDAC3-202, Transcript of histone deacetylase 3, humanhuman

TSL 5

Gene HDAC3, Length 524 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-202ENST00000459727 IQGAP3Q86VI3 1631 aa12.07□□□□□ -0.48
HDAC3-202ENST00000459727 ATP10AO60312 1499 aa12.07□□□□□ -0.48
HDAC3-202ENST00000459727 CYB5RLQ6IPT4 315 aa12.06□□□□□ -0.48
HDAC3-202ENST00000459727 MAGI2Q86UL8 1455 aa12.06□□□□□ -0.48
HDAC3-202ENST00000459727 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.06□□□□□ -0.48
HDAC3-202ENST00000459727 SYCP2Q9BX26 1530 aa12.05□□□□□ -0.48
HDAC3-202ENST00000459727 DHX29Q7Z478 1369 aaKnown RBP12.05□□□□□ -0.48
HDAC3-202ENST00000459727 C11orf95C9JLR9 678 aaPredicted RBP12.04□□□□□ -0.48
HDAC3-202ENST00000459727 STAC3Q96MF2 364 aa12.04□□□□□ -0.48
HDAC3-202ENST00000459727 CARD11Q9BXL7 1154 aa12.04□□□□□ -0.48
HDAC3-202ENST00000459727 RALBP1Q15311 655 aa12.03□□□□□ -0.48
HDAC3-202ENST00000459727 TTC37Q6PGP7 1564 aa12.03□□□□□ -0.48
HDAC3-202ENST00000459727 GPRASP1Q5JY77 1395 aa12.03□□□□□ -0.48
HDAC3-202ENST00000459727 WASHC2CQ9Y4E1 1318 aa12.02□□□□□ -0.49
HDAC3-202ENST00000459727 INSRP06213 1382 aa12.02□□□□□ -0.49
HDAC3-202ENST00000459727 PLCH2O75038 1416 aa12.02□□□□□ -0.49
HDAC3-202ENST00000459727 SMG6Q86US8 1419 aaKnown RBP12.02□□□□□ -0.49
HDAC3-202ENST00000459727 PRAG1Q86YV5 1406 aa12.02□□□□□ -0.49
HDAC3-202ENST00000459727 ZMYM4Q5VZL5 1548 aa12.01□□□□□ -0.49
HDAC3-202ENST00000459727 HNRNPMP52272 730 aaKnown RBP eCLIP12.01□□□□□ -0.49
HDAC3-202ENST00000459727 PPP4R2Q9NY27 417 aa12.01□□□□□ -0.49
HDAC3-202ENST00000459727 BRD4O60885 1362 aaPredicted RBP12.01□□□□□ -0.49
HDAC3-202ENST00000459727 RTEL1-TNFRSF6BF6WH68 1400 aa12.01□□□□□ -0.49
HDAC3-202ENST00000459727 CLASP1Q7Z460 1538 aa12.01□□□□□ -0.49
HDAC3-202ENST00000459727 TRPM1Q7Z4N2 1603 aa12□□□□□ -0.49
HDAC3-202ENST00000459727 BCORL1Q5H9F3 1711 aa12□□□□□ -0.49
HDAC3-202ENST00000459727 TRHP20396 242 aaPredicted RBP12□□□□□ -0.49
HDAC3-202ENST00000459727 AEBP2Q6ZN18 517 aaPredicted RBP12□□□□□ -0.49
HDAC3-202ENST00000459727 BCANQ96GW7 911 aa12□□□□□ -0.49
HDAC3-202ENST00000459727 E9PCH4 1651 aa12□□□□□ -0.49
HDAC3-202ENST00000459727 ZNF326Q5BKZ1 582 aaKnown RBP11.99□□□□□ -0.49
HDAC3-202ENST00000459727 EFCAB2Q5VUJ9 269 aa11.99□□□□□ -0.49
HDAC3-202ENST00000459727 ABCC1P33527 1531 aa11.99□□□□□ -0.49
HDAC3-202ENST00000459727 WDR7Q9Y4E6 1490 aa11.98□□□□□ -0.49
HDAC3-202ENST00000459727 MYBBP1AQ9BQG0 1328 aaKnown RBP11.98□□□□□ -0.49
HDAC3-202ENST00000459727 FAM9BQ8IZU0 186 aa11.98□□□□□ -0.49
HDAC3-202ENST00000459727 PRDM15P57071 1507 aaPredicted RBP11.97□□□□□ -0.49
HDAC3-202ENST00000459727 ZCCHC11Q5TAX3 1644 aaKnown RBP11.97□□□□□ -0.49
HDAC3-202ENST00000459727 NEURL4Q96JN8 1562 aa11.96□□□□□ -0.49
HDAC3-202ENST00000459727 SLC24A1O60721 1099 aa11.96□□□□□ -0.49
HDAC3-202ENST00000459727 DCAF11Q8TEB1 546 aa11.96□□□□□ -0.49
HDAC3-202ENST00000459727 COL17A1Q9UMD9 1497 aaPredicted RBP11.95□□□□□ -0.5
HDAC3-202ENST00000459727 TMC1Q8TDI8 760 aa11.95□□□□□ -0.5
HDAC3-202ENST00000459727 NUDCQ9Y266 331 aa11.95□□□□□ -0.5
HDAC3-202ENST00000459727 LRPPRCP42704 1394 aaKnown RBP11.94□□□□□ -0.5
HDAC3-202ENST00000459727 A2MP01023 1474 aa11.94□□□□□ -0.5
HDAC3-202ENST00000459727 RNF17Q9BXT8 1623 aaKnown RBP11.93□□□□□ -0.5
HDAC3-202ENST00000459727 TRPM2O94759 1503 aa11.92□□□□□ -0.5
HDAC3-202ENST00000459727 PLA2R1Q13018 1463 aa11.92□□□□□ -0.5
HDAC3-202ENST00000459727 ST20-MTHFSA0A0A6YYL1 179 aa11.92□□□□□ -0.5
HDAC3-202ENST00000459727 PDE3BQ13370 1112 aa11.92□□□□□ -0.5
HDAC3-202ENST00000459727 CCDC184Q52MB2 194 aa11.92□□□□□ -0.5
HDAC3-202ENST00000459727 NLRP13Q86W25 1043 aa11.92□□□□□ -0.5
HDAC3-202ENST00000459727 KANK1Q14678 1352 aa11.92□□□□□ -0.5
HDAC3-202ENST00000459727 RNF123Q5XPI4 1314 aa11.91□□□□□ -0.5
HDAC3-202ENST00000459727 FANCIQ9NVI1 1328 aa11.91□□□□□ -0.5
HDAC3-202ENST00000459727 DEPDC5O75140 1603 aa11.91□□□□□ -0.5
HDAC3-202ENST00000459727 CDCA8Q53HL2 280 aa11.91□□□□□ -0.5
HDAC3-202ENST00000459727 PNISRQ8TF01 805 aaKnown RBP11.91□□□□□ -0.5
HDAC3-202ENST00000459727 RBM19Q9Y4C8 960 aaKnown RBP11.91□□□□□ -0.5
HDAC3-202ENST00000459727 PARD3Q8TEW0 1356 aa11.91□□□□□ -0.5
HDAC3-202ENST00000459727 ZFYVE16Q7Z3T8 1539 aa11.91□□□□□ -0.5
HDAC3-202ENST00000459727 POLR3GLQ9BT43 218 aa11.9□□□□□ -0.5
HDAC3-202ENST00000459727 ANP32EQ9BTT0 268 aa11.9□□□□□ -0.5
HDAC3-202ENST00000459727 SCAPERQ9BY12 1400 aa11.89□□□□□ -0.51
HDAC3-202ENST00000459727 TMF1P82094 1093 aa11.89□□□□□ -0.51
HDAC3-202ENST00000459727 KDM2AQ9Y2K7 1162 aa11.89□□□□□ -0.51
HDAC3-202ENST00000459727 EIF3AQ14152 1382 aaKnown RBP11.89□□□□□ -0.51
HDAC3-202ENST00000459727 SPAG9O60271 1321 aaKnown RBP11.88□□□□□ -0.51
HDAC3-202ENST00000459727 TET3O43151 1660 aa11.88□□□□□ -0.51
HDAC3-202ENST00000459727 PTPRTO14522 1441 aa11.88□□□□□ -0.51
HDAC3-202ENST00000459727 ERCC6L2Q5T890 1561 aa11.88□□□□□ -0.51
HDAC3-202ENST00000459727 ABCA9Q8IUA7 1624 aa11.87□□□□□ -0.51
HDAC3-202ENST00000459727 INO80Q9ULG1 1556 aaPredicted RBP11.87□□□□□ -0.51
HDAC3-202ENST00000459727 CEP152O94986 1710 aa11.86□□□□□ -0.51
HDAC3-202ENST00000459727 KIAA1210Q9ULL0 1709 aa11.86□□□□□ -0.51
HDAC3-202ENST00000459727 ATP7AQ04656 1500 aa11.86□□□□□ -0.51
HDAC3-202ENST00000459727 VWDEQ8N2E2 1590 aa11.85□□□□□ -0.51
HDAC3-202ENST00000459727 CFAP74Q9C0B2 1584 aa11.85□□□□□ -0.51
HDAC3-202ENST00000459727 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.85□□□□□ -0.51
HDAC3-202ENST00000459727 SPHKAPQ2M3C7 1700 aa11.85□□□□□ -0.51
HDAC3-202ENST00000459727 MADDQ8WXG6 1647 aa11.85□□□□□ -0.51
HDAC3-202ENST00000459727 TRAPPC8Q9Y2L5 1435 aa11.85□□□□□ -0.51
HDAC3-202ENST00000459727 SCAF11Q99590 1463 aaKnown RBP11.84□□□□□ -0.51
HDAC3-202ENST00000459727 IQGAP1P46940 1657 aa11.84□□□□□ -0.51
HDAC3-202ENST00000459727 SYNMO15061 1565 aa11.84□□□□□ -0.51
HDAC3-202ENST00000459727 FANCAO15360 1455 aa11.83□□□□□ -0.52
HDAC3-202ENST00000459727 MYOM2P54296 1465 aa11.83□□□□□ -0.52
HDAC3-202ENST00000459727 NPC1L1Q9UHC9 1359 aa11.82□□□□□ -0.52
HDAC3-202ENST00000459727 TESK2Q96S53 571 aa11.82□□□□□ -0.52
HDAC3-202ENST00000459727 MYT1LQ9UL68 1186 aa11.82□□□□□ -0.52
HDAC3-202ENST00000459727 BLMP54132 1417 aaPredicted RBP11.82□□□□□ -0.52
HDAC3-202ENST00000459727 RGL3Q3MIN7 710 aa11.81□□□□□ -0.52
HDAC3-202ENST00000459727 LMTK2Q8IWU2 1503 aa11.81□□□□□ -0.52
HDAC3-202ENST00000459727 PER1O15534 1290 aaPredicted RBP11.8□□□□□ -0.52
HDAC3-202ENST00000459727 ADGRL1O94910 1474 aa11.8□□□□□ -0.52
HDAC3-202ENST00000459727 IRX6P78412 446 aaPredicted RBP11.79□□□□□ -0.52
HDAC3-202ENST00000459727 DISP3Q9P2K9 1392 aa11.79□□□□□ -0.52
HDAC3-202ENST00000459727 ZNF518AQ6AHZ1 1483 aa11.78□□□□□ -0.52
HDAC3-202ENST00000459727 ERICH6Q7L0X2 663 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms