RNA–Protein interactions for RNA: ENST00000456246.1

MSH6-207, Transcript of mutS homolog 6, humanhuman

TSL 3

Gene MSH6, Length 846 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-207ENST00000456246 RNF17Q9BXT8 1623 aaKnown RBP27.78■■■□□ 2.04
MSH6-207ENST00000456246 DNMT1P26358 1616 aaKnown RBP27.78■■■□□ 2.04
MSH6-207ENST00000456246 DUOX2Q9NRD8 1548 aa27.77■■■□□ 2.04
MSH6-207ENST00000456246 ABCC5O15440 1437 aa27.77■■■□□ 2.04
MSH6-207ENST00000456246 MYO3AQ8NEV4 1616 aa27.77■■■□□ 2.04
MSH6-207ENST00000456246 ZNF142P52746 1687 aaPredicted RBP27.76■■■□□ 2.03
MSH6-207ENST00000456246 ILDR1Q86SU0 546 aaPredicted RBP27.76■■■□□ 2.03
MSH6-207ENST00000456246 STRCQ7RTU9 1775 aa27.76■■■□□ 2.03
MSH6-207ENST00000456246 DAPK1P53355 1430 aa27.75■■■□□ 2.03
MSH6-207ENST00000456246 WASHC2CQ9Y4E1 1318 aa27.75■■■□□ 2.03
MSH6-207ENST00000456246 PZPP20742 1482 aa27.74■■■□□ 2.03
MSH6-207ENST00000456246 ZC3H13Q5T200 1668 aaKnown RBP27.73■■■□□ 2.03
MSH6-207ENST00000456246 NCOA1Q15788 1441 aa27.72■■■□□ 2.03
MSH6-207ENST00000456246 KIF15Q9NS87 1388 aa27.72■■■□□ 2.03
MSH6-207ENST00000456246 CEP170BQ9Y4F5 1589 aaPredicted RBP27.71■■■□□ 2.03
MSH6-207ENST00000456246 ERBINQ96RT1 1412 aa27.7■■■□□ 2.03
MSH6-207ENST00000456246 PTPRTO14522 1441 aa27.69■■■□□ 2.02
MSH6-207ENST00000456246 CAMSAP1Q5T5Y3 1602 aa27.68■■■□□ 2.02
MSH6-207ENST00000456246 ABCC3O15438 1527 aa27.67■■■□□ 2.02
MSH6-207ENST00000456246 PLA2R1Q13018 1463 aa27.66■■■□□ 2.02
MSH6-207ENST00000456246 ANKRD30AQ9BXX3 1397 aa27.66■■■□□ 2.02
MSH6-207ENST00000456246 TNRQ92752 1358 aa27.65■■■□□ 2.02
MSH6-207ENST00000456246 FBXO41Q8TF61 875 aa27.65■■■□□ 2.02
MSH6-207ENST00000456246 MROH1Q8NDA8 1641 aa27.65■■■□□ 2.02
MSH6-207ENST00000456246 A2ML1A8K2U0 1454 aa27.64■■■□□ 2.02
MSH6-207ENST00000456246 RRP7BPQ9NSQ0 103 aa27.62■■■□□ 2.01
MSH6-207ENST00000456246 PRDM15P57071 1507 aaPredicted RBP27.62■■■□□ 2.01
MSH6-207ENST00000456246 ADGRL2O95490 1459 aa27.6■■■□□ 2.01
MSH6-207ENST00000456246 NLRP1Q9C000 1473 aa27.59■■■□□ 2.01
MSH6-207ENST00000456246 PKD2Q13563 968 aa27.59■■■□□ 2.01
MSH6-207ENST00000456246 FBXO31Q5XUX0 539 aaPredicted RBP27.59■■■□□ 2.01
MSH6-207ENST00000456246 FAM50AQ14320 339 aaKnown RBP27.58■■■□□ 2.01
MSH6-207ENST00000456246 DEPDC5O75140 1603 aa27.57■■■□□ 2
MSH6-207ENST00000456246 CERKQ8TCT0 537 aa27.56■■■□□ 2
MSH6-207ENST00000456246 SPATA31D1Q6ZQQ2 1576 aa27.55■■■□□ 2
MSH6-207ENST00000456246 CEP152O94986 1710 aa27.55■■■□□ 2
MSH6-207ENST00000456246 CHIC2Q9UKJ5 165 aa27.54■■■□□ 2
MSH6-207ENST00000456246 KANK1Q14678 1352 aa27.53■■■□□ 2
MSH6-207ENST00000456246 ERVK-7P63135 1459 aa27.52■■■□□ 2
MSH6-207ENST00000456246 ARHGAP31Q2M1Z3 1444 aa27.51■■□□□ 1.99
MSH6-207ENST00000456246 NCKAP5LQ9HCH0 1330 aa27.49■■□□□ 1.99
MSH6-207ENST00000456246 UGGT1Q9NYU2 1555 aa27.48■■□□□ 1.99
MSH6-207ENST00000456246 THEMISQ8N1K5 641 aaPredicted RBP27.47■■□□□ 1.99
MSH6-207ENST00000456246 LMTK2Q8IWU2 1503 aa27.46■■□□□ 1.99
MSH6-207ENST00000456246 POLR1AO95602 1720 aaPredicted RBP27.45■■□□□ 1.99
MSH6-207ENST00000456246 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP27.45■■□□□ 1.984e-9■■■□□ 16.4
MSH6-207ENST00000456246 VWDEQ8N2E2 1590 aa27.44■■□□□ 1.98
MSH6-207ENST00000456246 ANKRD50Q9ULJ7 1429 aa27.44■■□□□ 1.98
MSH6-207ENST00000456246 GRWD1Q9BQ67 446 aaKnown RBP eCLIP27.44■■□□□ 1.981e-10■■■■□ 22.4
MSH6-207ENST00000456246 LTBP4Q8N2S1 1624 aa27.41■■□□□ 1.98
MSH6-207ENST00000456246 ROCK1Q13464 1354 aa27.41■■□□□ 1.98
MSH6-207ENST00000456246 IQSEC2Q5JU85 1478 aa27.4■■□□□ 1.98
MSH6-207ENST00000456246 ANKLE2Q86XL3 938 aa27.39■■□□□ 1.98
MSH6-207ENST00000456246 CFAP65Q6ZU64 1925 aaKnown RBP27.37■■□□□ 1.97
MSH6-207ENST00000456246 NEURL4Q96JN8 1562 aa27.37■■□□□ 1.97
MSH6-207ENST00000456246 EFCAB6Q5THR3 1501 aa27.36■■□□□ 1.97
MSH6-207ENST00000456246 MED14O60244 1454 aa27.34■■□□□ 1.97
MSH6-207ENST00000456246 UBR1Q8IWV7 1749 aa27.33■■□□□ 1.96
MSH6-207ENST00000456246 ZNF335Q9H4Z2 1342 aaPredicted RBP27.32■■□□□ 1.96
MSH6-207ENST00000456246 PPARGC1BQ86YN6 1023 aaKnown RBP27.31■■□□□ 1.96
MSH6-207ENST00000456246 RPRD2Q5VT52 1461 aaKnown RBP27.31■■□□□ 1.96
MSH6-207ENST00000456246 NPHP4O75161 1426 aaPredicted RBP27.3■■□□□ 1.96
MSH6-207ENST00000456246 UNC13BO14795 1591 aa27.3■■□□□ 1.96
MSH6-207ENST00000456246 TET3O43151 1660 aa27.27■■□□□ 1.96
MSH6-207ENST00000456246 KDM5AP29375 1690 aaKnown RBP27.27■■□□□ 1.96
MSH6-207ENST00000456246 NOS1P29475 1434 aa27.27■■□□□ 1.96
MSH6-207ENST00000456246 RRBP1Q9P2E9 1410 aaKnown RBP27.27■■□□□ 1.96
MSH6-207ENST00000456246 SLIT1O75093 1534 aa27.26■■□□□ 1.95
MSH6-207ENST00000456246 IQGAP1P46940 1657 aa27.25■■□□□ 1.95
MSH6-207ENST00000456246 ARHGAP23Q9P227 1491 aa27.25■■□□□ 1.95
MSH6-207ENST00000456246 PIK3C2BO00750 1634 aa27.24■■□□□ 1.95
MSH6-207ENST00000456246 SYNMO15061 1565 aa27.23■■□□□ 1.95
MSH6-207ENST00000456246 CPS1P31327 1500 aa27.23■■□□□ 1.95
MSH6-207ENST00000456246 ITGAEP38570 1179 aa27.23■■□□□ 1.95
MSH6-207ENST00000456246 SCAF11Q99590 1463 aaKnown RBP27.23■■□□□ 1.95
MSH6-207ENST00000456246 GCC2Q8IWJ2 1684 aa27.23■■□□□ 1.95
MSH6-207ENST00000456246 SLC52A1Q9NWF4 448 aa27.21■■□□□ 1.95
MSH6-207ENST00000456246 STAG3Q9UJ98 1225 aa27.21■■□□□ 1.95
MSH6-207ENST00000456246 IQGAP3Q86VI3 1631 aa27.19■■□□□ 1.94
MSH6-207ENST00000456246 EID1Q9Y6B2 187 aa27.18■■□□□ 1.94
MSH6-207ENST00000456246 IDI1Q13907 227 aa27.17■■□□□ 1.94
MSH6-207ENST00000456246 TMEM2Q9UHN6 1383 aa27.17■■□□□ 1.94
MSH6-207ENST00000456246 ADGRB3O60242 1522 aa27.16■■□□□ 1.94
MSH6-207ENST00000456246 TXNDC2Q86VQ3 553 aa27.15■■□□□ 1.94
MSH6-207ENST00000456246 NUP155O75694 1391 aa27.12■■□□□ 1.93
MSH6-207ENST00000456246 LTKP29376 864 aa27.11■■□□□ 1.93
MSH6-207ENST00000456246 E9PCH4 1651 aa27.1■■□□□ 1.93
MSH6-207ENST00000456246 UBAP1LF5GYI3 381 aa27.06■■□□□ 1.92
MSH6-207ENST00000456246 NAIPQ13075 1403 aa27.04■■□□□ 1.92
MSH6-207ENST00000456246 TMEM131LA2VDJ0 1609 aa27.01■■□□□ 1.92
MSH6-207ENST00000456246 HDGFP51858 240 aaKnown RBP27.01■■□□□ 1.91
MSH6-207ENST00000456246 HFM1A2PYH4 1435 aa27■■□□□ 1.91
MSH6-207ENST00000456246 TOM1O60784 492 aa26.99■■□□□ 1.91
MSH6-207ENST00000456246 STRCP1A6NGW2 1772 aa26.99■■□□□ 1.91
MSH6-207ENST00000456246 ZFYVE9O95405 1425 aa26.98■■□□□ 1.91
MSH6-207ENST00000456246 LRRC7Q96NW7 1537 aa26.97■■□□□ 1.91
MSH6-207ENST00000456246 MYO5BQ9ULV0 1848 aa26.96■■□□□ 1.91
MSH6-207ENST00000456246 RIMS2Q9UQ26 1411 aa26.95■■□□□ 1.9
MSH6-207ENST00000456246 SPHKAPQ2M3C7 1700 aa26.94■■□□□ 1.9
MSH6-207ENST00000456246 ABCF1Q8NE71 845 aaKnown RBP eCLIP26.94■■□□□ 1.9
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms