RNA–Protein interactions for RNA: ENST00000443016.1

USP6NL-203, Transcript of USP6 N-terminal like, humanhuman

TSL 2

Gene USP6NL, Length 2,491 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP6NL-203ENST00000443016 PTPRKQ15262 1439 aa13.56□□□□□ -0.24
USP6NL-203ENST00000443016 DAXXQ9UER7 740 aaPredicted RBP13.54□□□□□ -0.24
USP6NL-203ENST00000443016 FGD6Q6ZV73 1430 aa13.54□□□□□ -0.24
USP6NL-203ENST00000443016 RRP7BPQ9NSQ0 103 aa13.54□□□□□ -0.24
USP6NL-203ENST00000443016 FBXO31Q5XUX0 539 aaPredicted RBP13.53□□□□□ -0.24
USP6NL-203ENST00000443016 CERKQ8TCT0 537 aa13.53□□□□□ -0.24
USP6NL-203ENST00000443016 KDM5DQ9BY66 1539 aa13.53□□□□□ -0.24
USP6NL-203ENST00000443016 PTPN23Q9H3S7 1636 aa13.53□□□□□ -0.24
USP6NL-203ENST00000443016 MAST1Q9Y2H9 1570 aa13.53□□□□□ -0.24
USP6NL-203ENST00000443016 FAM50AQ14320 339 aaKnown RBP13.52□□□□□ -0.24
USP6NL-203ENST00000443016 KIF15Q9NS87 1388 aa13.52□□□□□ -0.25
USP6NL-203ENST00000443016 CHIC2Q9UKJ5 165 aa13.52□□□□□ -0.25
USP6NL-203ENST00000443016 STRCQ7RTU9 1775 aa13.52□□□□□ -0.25
USP6NL-203ENST00000443016 ABCC5O15440 1437 aa13.51□□□□□ -0.25
USP6NL-203ENST00000443016 NCOA1Q15788 1441 aa13.51□□□□□ -0.25
USP6NL-203ENST00000443016 CAMSAP1Q5T5Y3 1602 aa13.51□□□□□ -0.25
USP6NL-203ENST00000443016 TNRQ92752 1358 aa13.5□□□□□ -0.25
USP6NL-203ENST00000443016 FAM135AQ9P2D6 1515 aa13.5□□□□□ -0.25
USP6NL-203ENST00000443016 DAPK1P53355 1430 aa13.5□□□□□ -0.25
USP6NL-203ENST00000443016 MYO3AQ8NEV4 1616 aa13.5□□□□□ -0.25
USP6NL-203ENST00000443016 NCKAP5LQ9HCH0 1330 aa13.5□□□□□ -0.25
USP6NL-203ENST00000443016 PTPRTO14522 1441 aa13.5□□□□□ -0.25
USP6NL-203ENST00000443016 CEP170BQ9Y4F5 1589 aaPredicted RBP13.5□□□□□ -0.25
USP6NL-203ENST00000443016 DUOX2Q9NRD8 1548 aa13.49□□□□□ -0.25
USP6NL-203ENST00000443016 PZPP20742 1482 aa13.49□□□□□ -0.25
USP6NL-203ENST00000443016 SHANK2Q9UPX8 1470 aa13.49□□□□□ -0.25
USP6NL-203ENST00000443016 PKD2Q13563 968 aa13.49□□□□□ -0.25
USP6NL-203ENST00000443016 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.49□□□□□ -0.25
USP6NL-203ENST00000443016 ANKRD30AQ9BXX3 1397 aa13.48□□□□□ -0.25
USP6NL-203ENST00000443016 TCOF1Q13428 1488 aaKnown RBP13.47□□□□□ -0.25
USP6NL-203ENST00000443016 A2ML1A8K2U0 1454 aa13.47□□□□□ -0.25
USP6NL-203ENST00000443016 EIF2AK4Q9P2K8 1649 aaKnown RBP13.46□□□□□ -0.25
USP6NL-203ENST00000443016 DNMT1P26358 1616 aaKnown RBP13.46□□□□□ -0.25
USP6NL-203ENST00000443016 RNF17Q9BXT8 1623 aaKnown RBP13.46□□□□□ -0.26
USP6NL-203ENST00000443016 ERBINQ96RT1 1412 aa13.45□□□□□ -0.26
USP6NL-203ENST00000443016 ZNF142P52746 1687 aaPredicted RBP13.45□□□□□ -0.26
USP6NL-203ENST00000443016 PLA2R1Q13018 1463 aa13.45□□□□□ -0.26
USP6NL-203ENST00000443016 ABCC3O15438 1527 aa13.45□□□□□ -0.26
USP6NL-203ENST00000443016 THEMISQ8N1K5 641 aaPredicted RBP13.45□□□□□ -0.26
USP6NL-203ENST00000443016 PPARGC1BQ86YN6 1023 aaKnown RBP13.45□□□□□ -0.26
USP6NL-203ENST00000443016 CROCC2H7BZ55 1655 aa13.44□□□□□ -0.26
USP6NL-203ENST00000443016 KANK1Q14678 1352 aa13.44□□□□□ -0.26
USP6NL-203ENST00000443016 NLRP1Q9C000 1473 aa13.43□□□□□ -0.26
USP6NL-203ENST00000443016 ANKLE2Q86XL3 938 aa13.42□□□□□ -0.26
USP6NL-203ENST00000443016 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.42□□□□□ -0.26
USP6NL-203ENST00000443016 ZC3H13Q5T200 1668 aaKnown RBP13.42□□□□□ -0.26
USP6NL-203ENST00000443016 ZNF335Q9H4Z2 1342 aaPredicted RBP13.41□□□□□ -0.26
USP6NL-203ENST00000443016 UGGT1Q9NYU2 1555 aa13.41□□□□□ -0.26
USP6NL-203ENST00000443016 MROH1Q8NDA8 1641 aa13.41□□□□□ -0.26
USP6NL-203ENST00000443016 ITGAEP38570 1179 aa13.39□□□□□ -0.27
USP6NL-203ENST00000443016 PRDM15P57071 1507 aaPredicted RBP13.39□□□□□ -0.27
USP6NL-203ENST00000443016 ERVK-7P63135 1459 aa13.39□□□□□ -0.27
USP6NL-203ENST00000443016 CEP152O94986 1710 aa13.39□□□□□ -0.27
USP6NL-203ENST00000443016 CFAP65Q6ZU64 1925 aaKnown RBP13.38□□□□□ -0.27
USP6NL-203ENST00000443016 SPATA31D1Q6ZQQ2 1576 aa13.38□□□□□ -0.27
USP6NL-203ENST00000443016 STAG3Q9UJ98 1225 aa13.37□□□□□ -0.27
USP6NL-203ENST00000443016 ANKRD50Q9ULJ7 1429 aa13.37□□□□□ -0.27
USP6NL-203ENST00000443016 ADGRL2O95490 1459 aa13.37□□□□□ -0.27
USP6NL-203ENST00000443016 LTBP4Q8N2S1 1624 aa13.36□□□□□ -0.27
USP6NL-203ENST00000443016 ARHGAP31Q2M1Z3 1444 aa13.36□□□□□ -0.27
USP6NL-203ENST00000443016 DEPDC5O75140 1603 aa13.34□□□□□ -0.27
USP6NL-203ENST00000443016 NPHP4O75161 1426 aaPredicted RBP13.33□□□□□ -0.28
USP6NL-203ENST00000443016 POLR1AO95602 1720 aaPredicted RBP13.33□□□□□ -0.28
USP6NL-203ENST00000443016 UBAP1LF5GYI3 381 aa13.32□□□□□ -0.28
USP6NL-203ENST00000443016 EID1Q9Y6B2 187 aa13.32□□□□□ -0.28
USP6NL-203ENST00000443016 IQSEC2Q5JU85 1478 aa13.31□□□□□ -0.28
USP6NL-203ENST00000443016 TXNDC2Q86VQ3 553 aa13.31□□□□□ -0.28
USP6NL-203ENST00000443016 NEURL4Q96JN8 1562 aa13.31□□□□□ -0.28
USP6NL-203ENST00000443016 LMTK2Q8IWU2 1503 aa13.3□□□□□ -0.28
USP6NL-203ENST00000443016 IDI1Q13907 227 aa13.3□□□□□ -0.28
USP6NL-203ENST00000443016 ROCK1Q13464 1354 aa13.3□□□□□ -0.28
USP6NL-203ENST00000443016 MED14O60244 1454 aa13.29□□□□□ -0.28
USP6NL-203ENST00000443016 VWDEQ8N2E2 1590 aa13.29□□□□□ -0.28
USP6NL-203ENST00000443016 LTKP29376 864 aa13.28□□□□□ -0.28
USP6NL-203ENST00000443016 SLC52A1Q9NWF4 448 aa13.28□□□□□ -0.28
USP6NL-203ENST00000443016 SCAF11Q99590 1463 aaKnown RBP13.28□□□□□ -0.28
USP6NL-203ENST00000443016 EFCAB6Q5THR3 1501 aa13.28□□□□□ -0.28
USP6NL-203ENST00000443016 UBR1Q8IWV7 1749 aa13.28□□□□□ -0.28
USP6NL-203ENST00000443016 SCAF1Q9H7N4 1312 aaKnown RBP13.28□□□□□ -0.28
USP6NL-203ENST00000443016 IQGAP1P46940 1657 aa13.26□□□□□ -0.29
USP6NL-203ENST00000443016 TMEM2Q9UHN6 1383 aa13.26□□□□□ -0.29
USP6NL-203ENST00000443016 CPS1P31327 1500 aa13.26□□□□□ -0.29
USP6NL-203ENST00000443016 PIK3C2BO00750 1634 aa13.25□□□□□ -0.29
USP6NL-203ENST00000443016 RPRD2Q5VT52 1461 aaKnown RBP13.25□□□□□ -0.29
USP6NL-203ENST00000443016 NOS1P29475 1434 aa13.25□□□□□ -0.29
USP6NL-203ENST00000443016 NUP155O75694 1391 aa13.25□□□□□ -0.29
USP6NL-203ENST00000443016 BCANQ96GW7 911 aa13.25□□□□□ -0.29
USP6NL-203ENST00000443016 SLC4A1APQ9BWU0 796 aaKnown RBP13.25□□□□□ -0.29
USP6NL-203ENST00000443016 TOM1O60784 492 aa13.24□□□□□ -0.29
USP6NL-203ENST00000443016 SLIT1O75093 1534 aa13.24□□□□□ -0.29
USP6NL-203ENST00000443016 CHGAP10645 457 aaKnown RBP13.24□□□□□ -0.29
USP6NL-203ENST00000443016 PIP4K2BP78356 416 aa13.24□□□□□ -0.29
USP6NL-203ENST00000443016 ARHGAP23Q9P227 1491 aa13.24□□□□□ -0.29
USP6NL-203ENST00000443016 SYNMO15061 1565 aa13.23□□□□□ -0.29
USP6NL-203ENST00000443016 SENP3Q9H4L4 574 aaPredicted RBP13.22□□□□□ -0.29
USP6NL-203ENST00000443016 TET3O43151 1660 aa13.22□□□□□ -0.29
USP6NL-203ENST00000443016 UNC13BO14795 1591 aa13.22□□□□□ -0.29
USP6NL-203ENST00000443016 RRBP1Q9P2E9 1410 aaKnown RBP13.21□□□□□ -0.29
USP6NL-203ENST00000443016 PPP1R15AO75807 674 aaPredicted RBP13.21□□□□□ -0.29
USP6NL-203ENST00000443016 HDGFP51858 240 aaKnown RBP13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 70.6 ms