RNA–Protein interactions for RNA: ENST00000443016.1

USP6NL-203, Transcript of USP6 N-terminal like, humanhuman

TSL 2

Gene USP6NL, Length 2,491 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP6NL-203ENST00000443016 NISCHQ9Y2I1 1504 aa21.41■■□□□ 1.02
USP6NL-203ENST00000443016 CCDC180Q9P1Z9 1646 aa19.08■□□□□ 0.64
USP6NL-203ENST00000443016 ABCC9O60706 1549 aa19.01■□□□□ 0.63
USP6NL-203ENST00000443016 DCAF8L2P0C7V8 631 aa18.17■□□□□ 0.5
USP6NL-203ENST00000443016 RB1CC1Q8TDY2 1594 aa18.13■□□□□ 0.49
USP6NL-203ENST00000443016 NACADO15069 1562 aa18.04■□□□□ 0.48
USP6NL-203ENST00000443016 MYO15BQ96JP2 1530 aa17.82■□□□□ 0.44
USP6NL-203ENST00000443016 PABPN1Q86U42 306 aaKnown RBP eCLIP17.77■□□□□ 0.43
USP6NL-203ENST00000443016 ZCCHC6Q5VYS8 1495 aaKnown RBP17.77■□□□□ 0.43
USP6NL-203ENST00000443016 DCAF1Q9Y4B6 1507 aa17.66■□□□□ 0.42
USP6NL-203ENST00000443016 DNAJC5BQ9UF47 199 aa17.65■□□□□ 0.42
USP6NL-203ENST00000443016 UNC13AQ9UPW8 1703 aa17.64■□□□□ 0.41
USP6NL-203ENST00000443016 BICRAQ9NZM4 1560 aa17.54■□□□□ 0.4
USP6NL-203ENST00000443016 SCRIBQ14160 1630 aa17.47■□□□□ 0.39
USP6NL-203ENST00000443016 SHROOM4Q9ULL8 1493 aa17.35■□□□□ 0.37
USP6NL-203ENST00000443016 EIF4G1Q04637 1599 aaKnown RBP17.14■□□□□ 0.34
USP6NL-203ENST00000443016 CC2D2AQ9P2K1 1620 aa17.13■□□□□ 0.33
USP6NL-203ENST00000443016 CECR2Q9BXF3 1484 aa17.1■□□□□ 0.33
USP6NL-203ENST00000443016 NCAPD3P42695 1498 aa16.66■□□□□ 0.26
USP6NL-203ENST00000443016 SMARCA4P51532 1647 aa16.64■□□□□ 0.26
USP6NL-203ENST00000443016 ATAD2BQ9ULI0 1458 aa16.64■□□□□ 0.25
USP6NL-203ENST00000443016 BAZ1AQ9NRL2 1556 aaPredicted RBP16.62■□□□□ 0.25
USP6NL-203ENST00000443016 SMARCA2P51531 1590 aa16.61■□□□□ 0.25
USP6NL-203ENST00000443016 HMGXB3Q12766 1538 aa16.53■□□□□ 0.24
USP6NL-203ENST00000443016 BAZ1BQ9UIG0 1483 aaKnown RBP16.52■□□□□ 0.24
USP6NL-203ENST00000443016 MROH2BQ7Z745 1585 aa16.5■□□□□ 0.23
USP6NL-203ENST00000443016 PEG3Q9GZU2 1588 aa16.46■□□□□ 0.22
USP6NL-203ENST00000443016 ERCC6Q03468 1493 aa16.44■□□□□ 0.22
USP6NL-203ENST00000443016 NESP48681 1621 aa16.36■□□□□ 0.21
USP6NL-203ENST00000443016 WIZO95785 1651 aa16.3■□□□□ 0.2
USP6NL-203ENST00000443016 CUX2O14529 1486 aa16.28■□□□□ 0.2
USP6NL-203ENST00000443016 LAMC3Q9Y6N6 1575 aa16.25■□□□□ 0.19
USP6NL-203ENST00000443016 RSF1Q96T23 1441 aaPredicted RBP16.24■□□□□ 0.19
USP6NL-203ENST00000443016 PDS5BQ9NTI5 1447 aa16.21■□□□□ 0.19
USP6NL-203ENST00000443016 CADPSQ9ULU8 1353 aa16.2■□□□□ 0.18
USP6NL-203ENST00000443016 TOP2AP11388 1531 aaKnown RBP16.11■□□□□ 0.17
USP6NL-203ENST00000443016 KIF21AQ7Z4S6 1674 aa16.1■□□□□ 0.17
USP6NL-203ENST00000443016 DNAJC5Q9H3Z4 198 aa16.1■□□□□ 0.17
USP6NL-203ENST00000443016 THOC2Q8NI27 1593 aaKnown RBP16.1■□□□□ 0.17
USP6NL-203ENST00000443016 CFTRP13569 1480 aa16.02■□□□□ 0.16
USP6NL-203ENST00000443016 MRC2Q9UBG0 1479 aa16.02■□□□□ 0.15
USP6NL-203ENST00000443016 CEP164Q9UPV0 1460 aa16.02■□□□□ 0.15
USP6NL-203ENST00000443016 FANCD2Q9BXW9 1451 aa16.01■□□□□ 0.15
USP6NL-203ENST00000443016 CCDC88BA6NC98 1476 aa15.95■□□□□ 0.14
USP6NL-203ENST00000443016 WDR62O43379 1518 aa15.94■□□□□ 0.14
USP6NL-203ENST00000443016 CHIC1Q5VXU3 224 aa15.93■□□□□ 0.14
USP6NL-203ENST00000443016 URB2Q14146 1524 aaKnown RBP15.83■□□□□ 0.13
USP6NL-203ENST00000443016 PRDM2Q13029 1718 aa15.8■□□□□ 0.12
USP6NL-203ENST00000443016 SUPT5HO00267 1087 aaKnown RBP15.78■□□□□ 0.12
USP6NL-203ENST00000443016 TOPBP1Q92547 1522 aa15.7■□□□□ 0.1
USP6NL-203ENST00000443016 ABCC8Q09428 1581 aa15.7■□□□□ 0.1
USP6NL-203ENST00000443016 IFT140Q96RY7 1462 aa15.67■□□□□ 0.1
USP6NL-203ENST00000443016 DNMBPQ6XZF7 1577 aa15.65■□□□□ 0.1
USP6NL-203ENST00000443016 OSCARQ8IYS5 282 aa15.64■□□□□ 0.09
USP6NL-203ENST00000443016 ZNF608Q9ULD9 1512 aaPredicted RBP15.63■□□□□ 0.09
USP6NL-203ENST00000443016 POLA1P09884 1462 aaPredicted RBP15.56■□□□□ 0.08
USP6NL-203ENST00000443016 TRIM41Q8WV44 630 aa15.55■□□□□ 0.08
USP6NL-203ENST00000443016 AQRO60306 1485 aaKnown RBP eCLIP15.54■□□□□ 0.08
USP6NL-203ENST00000443016 EIF4G3O43432 1585 aaKnown RBP15.53■□□□□ 0.08
USP6NL-203ENST00000443016 SOGA1O94964 1423 aa15.53■□□□□ 0.08
USP6NL-203ENST00000443016 RAD54L2Q9Y4B4 1467 aa15.51■□□□□ 0.07
USP6NL-203ENST00000443016 TARBP1Q13395 1621 aaKnown RBP15.51■□□□□ 0.07
USP6NL-203ENST00000443016 FBLN2P98095 1184 aa15.5■□□□□ 0.07
USP6NL-203ENST00000443016 FGD5Q6ZNL6 1462 aa15.5■□□□□ 0.07
USP6NL-203ENST00000443016 TDRD9Q8NDG6 1382 aaKnown RBP15.49■□□□□ 0.07
USP6NL-203ENST00000443016 CUX1P39880 1505 aa15.48■□□□□ 0.07
USP6NL-203ENST00000443016 CHMP7Q8WUX9 453 aaPredicted RBP15.38■□□□□ 0.05
USP6NL-203ENST00000443016 SNAPC4Q5SXM2 1469 aa15.37■□□□□ 0.05
USP6NL-203ENST00000443016 WDR97A6NE52 1622 aa15.36■□□□□ 0.05
USP6NL-203ENST00000443016 SLC24A1O60721 1099 aa15.36■□□□□ 0.05
USP6NL-203ENST00000443016 CHD1O14646 1710 aa15.36■□□□□ 0.05
USP6NL-203ENST00000443016 GRIN2BQ13224 1484 aa15.35■□□□□ 0.05
USP6NL-203ENST00000443016 WRNQ14191 1432 aaPredicted RBP eCLIP15.35■□□□□ 0.05
USP6NL-203ENST00000443016 GAPVD1Q14C86 1478 aa15.33■□□□□ 0.04
USP6NL-203ENST00000443016 ARHGEF11O15085 1522 aa15.32■□□□□ 0.04
USP6NL-203ENST00000443016 RIMBP3CA6NJZ7 1639 aa15.32■□□□□ 0.04
USP6NL-203ENST00000443016 RIMBP3BA6NNM3 1639 aa15.32■□□□□ 0.04
USP6NL-203ENST00000443016 RIMBP3Q9UFD9 1639 aa15.32■□□□□ 0.04
USP6NL-203ENST00000443016 MAGI1Q96QZ7 1491 aaPredicted RBP15.32■□□□□ 0.04
USP6NL-203ENST00000443016 ABCA10Q8WWZ4 1543 aa15.32■□□□□ 0.04
USP6NL-203ENST00000443016 CYB5RLQ6IPT4 315 aa15.29■□□□□ 0.04
USP6NL-203ENST00000443016 TOP2BQ02880 1626 aa15.28■□□□□ 0.04
USP6NL-203ENST00000443016 SYNJ2O15056 1496 aa15.28■□□□□ 0.04
USP6NL-203ENST00000443016 SYNJ1O43426 1573 aa15.27■□□□□ 0.04
USP6NL-203ENST00000443016 BIVM-ERCC5R4GMW8 1640 aa15.25■□□□□ 0.03
USP6NL-203ENST00000443016 PBRM1Q86U86 1689 aa15.25■□□□□ 0.03
USP6NL-203ENST00000443016 ABCA5Q8WWZ7 1642 aa15.24■□□□□ 0.03
USP6NL-203ENST00000443016 AEBP2Q6ZN18 517 aaPredicted RBP15.22■□□□□ 0.03
USP6NL-203ENST00000443016 CLASP1Q7Z460 1538 aa15.18■□□□□ 0.02
USP6NL-203ENST00000443016 ARAP1Q96P48 1450 aa15.17■□□□□ 0.02
USP6NL-203ENST00000443016 GRIN2AQ12879 1464 aa15.15■□□□□ 0.02
USP6NL-203ENST00000443016 FHAD1B1AJZ9 1412 aa15.14■□□□□ 0.01
USP6NL-203ENST00000443016 ADAMTS12P58397 1594 aa15.13■□□□□ 0.01
USP6NL-203ENST00000443016 ERICH3Q5RHP9 1530 aa15.13■□□□□ 0.01
USP6NL-203ENST00000443016 TRHP20396 242 aaPredicted RBP15.09■□□□□ 0.01
USP6NL-203ENST00000443016 NUP160Q12769 1436 aa15.07■□□□□ 0
USP6NL-203ENST00000443016 KIF27Q86VH2 1401 aa15.06■□□□□ 0
USP6NL-203ENST00000443016 CEP170Q5SW79 1584 aa15.05■□□□□ 0
USP6NL-203ENST00000443016 IGF1RP08069 1367 aa15□□□□□ -0.01
USP6NL-203ENST00000443016 JPH4Q96JJ6 628 aa14.99□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms