RNA–Protein interactions for RNA: ENST00000441310.6

PMS1-213, Transcript of PMS1 homolog 1, mismatch repair system component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PMS1, Length 3,225 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PMS1-213ENST00000441310 NUDCQ9Y266 331 aa22.39■■□□□ 1.17
PMS1-213ENST00000441310 PKNOX2Q96KN3 472 aa22.37■■□□□ 1.17
PMS1-213ENST00000441310 ADGRL2O95490 1459 aa22.37■■□□□ 1.17
PMS1-213ENST00000441310 SMG6Q86US8 1419 aaKnown RBP22.37■■□□□ 1.17
PMS1-213ENST00000441310 PDE4AP27815 886 aa22.36■■□□□ 1.17
PMS1-213ENST00000441310 KIAA1107Q9UPP5 1409 aa22.35■■□□□ 1.17
PMS1-213ENST00000441310 ARHGAP5Q13017 1502 aa22.34■■□□□ 1.17
PMS1-213ENST00000441310 MBD5Q9P267 1494 aa22.34■■□□□ 1.17
PMS1-213ENST00000441310 ADGBQ8N7X0 1667 aa22.34■■□□□ 1.17
PMS1-213ENST00000441310 FRAT1Q92837 279 aaPredicted RBP22.33■■□□□ 1.17
PMS1-213ENST00000441310 TEX14Q8IWB6 1497 aa22.32■■□□□ 1.16
PMS1-213ENST00000441310 CROCC2H7BZ55 1655 aa22.32■■□□□ 1.16
PMS1-213ENST00000441310 SHROOM2Q13796 1616 aa22.31■■□□□ 1.16
PMS1-213ENST00000441310 RNF123Q5XPI4 1314 aa22.31■■□□□ 1.16
PMS1-213ENST00000441310 TTC37Q6PGP7 1564 aa22.3■■□□□ 1.16
PMS1-213ENST00000441310 SAMD9LQ8IVG5 1584 aa22.3■■□□□ 1.16
PMS1-213ENST00000441310 CDC42BPBQ9Y5S2 1711 aa22.3■■□□□ 1.16
PMS1-213ENST00000441310 ABCC2Q92887 1545 aa22.29■■□□□ 1.16
PMS1-213ENST00000441310 TCERG1O14776 1098 aaKnown RBP22.29■■□□□ 1.16
PMS1-213ENST00000441310 SYCP2Q9BX26 1530 aa22.29■■□□□ 1.16
PMS1-213ENST00000441310 RGL3Q3MIN7 710 aa22.29■■□□□ 1.16
PMS1-213ENST00000441310 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP22.28■■□□□ 1.16
PMS1-213ENST00000441310 NFKBIBQ15653 356 aa22.28■■□□□ 1.16
PMS1-213ENST00000441310 CCDC141Q6ZP82 1450 aa22.28■■□□□ 1.16
PMS1-213ENST00000441310 BACH2Q9BYV9 841 aa22.27■■□□□ 1.16
PMS1-213ENST00000441310 RSPH6AQ9H0K4 717 aa22.27■■□□□ 1.15
PMS1-213ENST00000441310 CCDC7Q96M83 1385 aa22.26■■□□□ 1.15
PMS1-213ENST00000441310 DCAF11Q8TEB1 546 aa22.26■■□□□ 1.15
PMS1-213ENST00000441310 SLC4A3P48751 1232 aa22.25■■□□□ 1.15
PMS1-213ENST00000441310 SHANK2Q9UPX8 1470 aa22.25■■□□□ 1.15
PMS1-213ENST00000441310 RSPH4AQ5TD94 716 aa22.24■■□□□ 1.15
PMS1-213ENST00000441310 EFCAB2Q5VUJ9 269 aa22.24■■□□□ 1.15
PMS1-213ENST00000441310 EXOC6Q8TAG9 804 aa22.24■■□□□ 1.15
PMS1-213ENST00000441310 AFAP1Q8N556 730 aa22.23■■□□□ 1.15
PMS1-213ENST00000441310 PREX2Q70Z35 1606 aa22.22■■□□□ 1.15
PMS1-213ENST00000441310 KIF7Q2M1P5 1343 aa22.21■■□□□ 1.15
PMS1-213ENST00000441310 CLASP1Q7Z460 1538 aa22.2■■□□□ 1.14
PMS1-213ENST00000441310 ARHGEF12Q9NZN5 1544 aa22.18■■□□□ 1.14
PMS1-213ENST00000441310 ARHGEF5Q12774 1597 aa22.18■■□□□ 1.14
PMS1-213ENST00000441310 PLEKHH2Q8IVE3 1493 aa22.18■■□□□ 1.14
PMS1-213ENST00000441310 SKAP1Q86WV1 359 aa22.18■■□□□ 1.14
PMS1-213ENST00000441310 CARD11Q9BXL7 1154 aa22.18■■□□□ 1.14
PMS1-213ENST00000441310 DDRGK1Q96HY6 314 aa22.17■■□□□ 1.14
PMS1-213ENST00000441310 USP47Q96K76 1375 aa22.16■■□□□ 1.14
PMS1-213ENST00000441310 ZCCHC11Q5TAX3 1644 aaKnown RBP22.15■■□□□ 1.14
PMS1-213ENST00000441310 DAXXQ9UER7 740 aaPredicted RBP22.15■■□□□ 1.14
PMS1-213ENST00000441310 FAM43AQ8N2R8 423 aa22.15■■□□□ 1.14
PMS1-213ENST00000441310 PLCH2O75038 1416 aa22.14■■□□□ 1.13
PMS1-213ENST00000441310 TRAPPC8Q9Y2L5 1435 aa22.14■■□□□ 1.13
PMS1-213ENST00000441310 MS4A1P11836 297 aa22.12■■□□□ 1.13
PMS1-213ENST00000441310 SPATA31E1Q6ZUB1 1445 aa22.12■■□□□ 1.13
PMS1-213ENST00000441310 RRP1P56182 461 aaKnown RBP22.12■■□□□ 1.13
PMS1-213ENST00000441310 FAM135AQ9P2D6 1515 aa22.11■■□□□ 1.13
PMS1-213ENST00000441310 MYO5CQ9NQX4 1742 aa22.11■■□□□ 1.13
PMS1-213ENST00000441310 SPAG9O60271 1321 aaKnown RBP22.1■■□□□ 1.13
PMS1-213ENST00000441310 ST20-MTHFSA0A0A6YYL1 179 aa22.09■■□□□ 1.13
PMS1-213ENST00000441310 VSIG10Q8N0Z9 540 aa22.08■■□□□ 1.13
PMS1-213ENST00000441310 FRAT2O75474 233 aaPredicted RBP22.08■■□□□ 1.12
PMS1-213ENST00000441310 GLIPR1L2Q4G1C9 344 aa22.08■■□□□ 1.12
PMS1-213ENST00000441310 CCDC144AA2RUR9 1427 aa22.07■■□□□ 1.12
PMS1-213ENST00000441310 OSCARQ8IYS5 282 aa22.06■■□□□ 1.12
PMS1-213ENST00000441310 NBPF1Q3BBV0 1214 aa22.06■■□□□ 1.12
PMS1-213ENST00000441310 UHRF1BP1LA0JNW5 1464 aa22.05■■□□□ 1.12
PMS1-213ENST00000441310 ZMYND15Q9H091 742 aa22.03■■□□□ 1.12
PMS1-213ENST00000441310 TMC1Q8TDI8 760 aa22.02■■□□□ 1.12
PMS1-213ENST00000441310 KDM5DQ9BY66 1539 aa22.02■■□□□ 1.12
PMS1-213ENST00000441310 RCAN3Q9UKA8 241 aa22.02■■□□□ 1.12
PMS1-213ENST00000441310 ROCK2O75116 1388 aaKnown RBP22.01■■□□□ 1.11
PMS1-213ENST00000441310 PLA2R1Q13018 1463 aa22.01■■□□□ 1.11
PMS1-213ENST00000441310 NPM1P06748 294 aaKnown RBP eCLIP22.01■■□□□ 1.11
PMS1-213ENST00000441310 PNISRQ8TF01 805 aaKnown RBP21.99■■□□□ 1.11
PMS1-213ENST00000441310 KIF3BO15066 747 aa21.99■■□□□ 1.11
PMS1-213ENST00000441310 RRAGDQ9NQL2 400 aaPredicted RBP21.98■■□□□ 1.11
PMS1-213ENST00000441310 WDR7Q9Y4E6 1490 aa21.98■■□□□ 1.11
PMS1-213ENST00000441310 BCORL1Q5H9F3 1711 aa21.97■■□□□ 1.11
PMS1-213ENST00000441310 SCAPERQ9BY12 1400 aa21.96■■□□□ 1.11
PMS1-213ENST00000441310 ABCC1P33527 1531 aa21.96■■□□□ 1.11
PMS1-213ENST00000441310 PLIN1O60240 522 aa21.95■■□□□ 1.1
PMS1-213ENST00000441310 ASXL2Q76L83 1435 aa21.95■■□□□ 1.1
PMS1-213ENST00000441310 DUOX2Q9NRD8 1548 aa21.95■■□□□ 1.1
PMS1-213ENST00000441310 UHRF1BP1Q6BDS2 1440 aa21.95■■□□□ 1.1
PMS1-213ENST00000441310 DHX29Q7Z478 1369 aaKnown RBP21.95■■□□□ 1.1
PMS1-213ENST00000441310 FANCAO15360 1455 aa21.95■■□□□ 1.1
PMS1-213ENST00000441310 MAST1Q9Y2H9 1570 aa21.94■■□□□ 1.1
PMS1-213ENST00000441310 RALGAPBQ86X10 1494 aa21.94■■□□□ 1.1
PMS1-213ENST00000441310 NAP1L5Q96NT1 182 aaPredicted RBP21.91■■□□□ 1.1
PMS1-213ENST00000441310 KDM5CP41229 1560 aa21.91■■□□□ 1.1
PMS1-213ENST00000441310 PLXNC1O60486 1568 aa21.9■■□□□ 1.1
PMS1-213ENST00000441310 ARXQ96QS3 562 aa21.89■■□□□ 1.1
PMS1-213ENST00000441310 ERBINQ96RT1 1412 aa21.89■■□□□ 1.09
PMS1-213ENST00000441310 POGKQ9P215 609 aa21.88■■□□□ 1.09
PMS1-213ENST00000441310 A2MP01023 1474 aa21.88■■□□□ 1.09
PMS1-213ENST00000441310 UNC13BO14795 1591 aa21.88■■□□□ 1.09
PMS1-213ENST00000441310 CRBNQ96SW2 442 aa21.88■■□□□ 1.09
PMS1-213ENST00000441310 ADGRL1O94910 1474 aa21.88■■□□□ 1.09
PMS1-213ENST00000441310 PRAG1Q86YV5 1406 aa21.87■■□□□ 1.09
PMS1-213ENST00000441310 HSP90AA2PQ14568 343 aaPredicted RBP21.85■■□□□ 1.09
PMS1-213ENST00000441310 CDCA7LQ96GN5 454 aa21.84■■□□□ 1.09
PMS1-213ENST00000441310 IQGAP3Q86VI3 1631 aa21.83■■□□□ 1.09
PMS1-213ENST00000441310 ZFYVE16Q7Z3T8 1539 aa21.81■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms