RNA–Protein interactions for RNA: ENST00000441310.6

PMS1-213, Transcript of PMS1 homolog 1, mismatch repair system component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PMS1, Length 3,225 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PMS1-213ENST00000441310 NISCHQ9Y2I1 1504 aa34.03■■■■□ 3.04
PMS1-213ENST00000441310 SHROOM4Q9ULL8 1493 aa29.09■■■□□ 2.25
PMS1-213ENST00000441310 CCDC180Q9P1Z9 1646 aa28.94■■■□□ 2.22
PMS1-213ENST00000441310 DCAF8L2P0C7V8 631 aa28.9■■■□□ 2.22
PMS1-213ENST00000441310 ZCCHC6Q5VYS8 1495 aaKnown RBP28.64■■■□□ 2.18
PMS1-213ENST00000441310 HRCP23327 699 aa28.37■■■□□ 2.13
PMS1-213ENST00000441310 SUPT5HO00267 1087 aaKnown RBP28.34■■■□□ 2.13
PMS1-213ENST00000441310 PPARGC1BQ86YN6 1023 aaKnown RBP27.94■■■□□ 2.06
PMS1-213ENST00000441310 PCGF6Q9BYE7 350 aa27.77■■■□□ 2.04
PMS1-213ENST00000441310 PELP1Q8IZL8 1130 aaKnown RBP27.75■■■□□ 2.03
PMS1-213ENST00000441310 DCAF1Q9Y4B6 1507 aa27.73■■■□□ 2.03
PMS1-213ENST00000441310 ABCC9O60706 1549 aa27.64■■■□□ 2.02
PMS1-213ENST00000441310 SCRIBQ14160 1630 aa27.35■■□□□ 1.97
PMS1-213ENST00000441310 MYO15BQ96JP2 1530 aa27.33■■□□□ 1.97
PMS1-213ENST00000441310 CHIC1Q5VXU3 224 aa27.14■■□□□ 1.94
PMS1-213ENST00000441310 SCAF1Q9H7N4 1312 aaKnown RBP27.08■■□□□ 1.93
PMS1-213ENST00000441310 NACADO15069 1562 aa26.98■■□□□ 1.91
PMS1-213ENST00000441310 RSF1Q96T23 1441 aaPredicted RBP26.84■■□□□ 1.89
PMS1-213ENST00000441310 CECR2Q9BXF3 1484 aa26.73■■□□□ 1.87
PMS1-213ENST00000441310 MYT1Q01538 1121 aa26.72■■□□□ 1.87
PMS1-213ENST00000441310 RB1CC1Q8TDY2 1594 aa26.68■■□□□ 1.86
PMS1-213ENST00000441310 TRIM26Q12899 539 aaPredicted RBP26.65■■□□□ 1.86
PMS1-213ENST00000441310 LOC105371045A0A1W2PR82 267 aa26.61■■□□□ 1.85
PMS1-213ENST00000441310 MROH2BQ7Z745 1585 aa26.52■■□□□ 1.84
PMS1-213ENST00000441310 ZEB1P37275 1124 aaPredicted RBP26.49■■□□□ 1.83
PMS1-213ENST00000441310 PABPN1Q86U42 306 aaKnown RBP eCLIP26.48■■□□□ 1.83
PMS1-213ENST00000441310 WIZO95785 1651 aa26.33■■□□□ 1.81
PMS1-213ENST00000441310 TRIM41Q8WV44 630 aa26.32■■□□□ 1.8
PMS1-213ENST00000441310 ACIN1Q9UKV3 1341 aaKnown RBP26.28■■□□□ 1.8
PMS1-213ENST00000441310 FAM9AQ8IZU1 332 aaPredicted RBP26.27■■□□□ 1.8
PMS1-213ENST00000441310 NEUROD1Q13562 356 aa26.25■■□□□ 1.79
PMS1-213ENST00000441310 UNC13AQ9UPW8 1703 aa26.22■■□□□ 1.79
PMS1-213ENST00000441310 EHMT2Q96KQ7 1210 aa26.21■■□□□ 1.79
PMS1-213ENST00000441310 GTF3C3Q9Y5Q9 886 aa26.16■■□□□ 1.78
PMS1-213ENST00000441310 BAZ1AQ9NRL2 1556 aaPredicted RBP26.14■■□□□ 1.78
PMS1-213ENST00000441310 SMARCA4P51532 1647 aa25.99■■□□□ 1.75
PMS1-213ENST00000441310 BICRAQ9NZM4 1560 aa25.98■■□□□ 1.75
PMS1-213ENST00000441310 CENPBP07199 599 aaPredicted RBP25.91■■□□□ 1.74
PMS1-213ENST00000441310 CCDC88BA6NC98 1476 aa25.82■■□□□ 1.72
PMS1-213ENST00000441310 TOP2AP11388 1531 aaKnown RBP25.81■■□□□ 1.72
PMS1-213ENST00000441310 DIEXFQ68CQ4 756 aaKnown RBP25.7■■□□□ 1.7
PMS1-213ENST00000441310 SMARCA2P51531 1590 aa25.69■■□□□ 1.7
PMS1-213ENST00000441310 ABCC8Q09428 1581 aa25.66■■□□□ 1.7
PMS1-213ENST00000441310 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.63■■□□□ 1.69
PMS1-213ENST00000441310 CCER1Q8TC90 406 aaPredicted RBP25.57■■□□□ 1.68
PMS1-213ENST00000441310 EIF4G1Q04637 1599 aaKnown RBP25.57■■□□□ 1.68
PMS1-213ENST00000441310 ATAD2BQ9ULI0 1458 aa25.51■■□□□ 1.67
PMS1-213ENST00000441310 YTHDC1Q96MU7 727 aaKnown RBP25.48■■□□□ 1.67
PMS1-213ENST00000441310 BAZ1BQ9UIG0 1483 aaKnown RBP25.44■■□□□ 1.66
PMS1-213ENST00000441310 PEG3Q9GZU2 1588 aa25.37■■□□□ 1.65
PMS1-213ENST00000441310 SOGA1O94964 1423 aa25.37■■□□□ 1.65
PMS1-213ENST00000441310 RUSC2Q8N2Y8 1516 aa25.28■■□□□ 1.64
PMS1-213ENST00000441310 WRNQ14191 1432 aaPredicted RBP eCLIP25.25■■□□□ 1.63
PMS1-213ENST00000441310 UBTFP17480 764 aaKnown RBP25.21■■□□□ 1.63
PMS1-213ENST00000441310 CSRNP3Q8WYN3 585 aa25.2■■□□□ 1.63
PMS1-213ENST00000441310 TTBK1Q5TCY1 1321 aaPredicted RBP25.2■■□□□ 1.62
PMS1-213ENST00000441310 BCL11AQ9H165 835 aa25.16■■□□□ 1.62
PMS1-213ENST00000441310 ZNF316A6NFI3 1004 aaPredicted RBP25.08■■□□□ 1.61
PMS1-213ENST00000441310 SYNJ1O43426 1573 aa25.08■■□□□ 1.61
PMS1-213ENST00000441310 NCAPD3P42695 1498 aa25.04■■□□□ 1.6
PMS1-213ENST00000441310 RANGAP1P46060 587 aaPredicted RBP25.03■■□□□ 1.6
PMS1-213ENST00000441310 MIER1Q8N108 512 aa25.03■■□□□ 1.6
PMS1-213ENST00000441310 CEP162Q5TB80 1403 aa24.97■■□□□ 1.59
PMS1-213ENST00000441310 ANP32EQ9BTT0 268 aa24.94■■□□□ 1.58
PMS1-213ENST00000441310 EEA1Q15075 1411 aa24.93■■□□□ 1.58
PMS1-213ENST00000441310 HMGXB3Q12766 1538 aa24.9■■□□□ 1.58
PMS1-213ENST00000441310 TNIKQ9UKE5 1360 aa24.9■■□□□ 1.58
PMS1-213ENST00000441310 GOLGA3Q08378 1498 aa24.83■■□□□ 1.57
PMS1-213ENST00000441310 SUPT16HQ9Y5B9 1047 aaKnown RBP24.76■■□□□ 1.55
PMS1-213ENST00000441310 TSHZ2Q9NRE2 1034 aa24.75■■□□□ 1.55
PMS1-213ENST00000441310 CEP164Q9UPV0 1460 aa24.73■■□□□ 1.55
PMS1-213ENST00000441310 CFTRP13569 1480 aa24.73■■□□□ 1.55
PMS1-213ENST00000441310 RAPGEF2Q9Y4G8 1499 aa24.73■■□□□ 1.55
PMS1-213ENST00000441310 TOP2BQ02880 1626 aa24.72■■□□□ 1.55
PMS1-213ENST00000441310 CC2D2AQ9P2K1 1620 aa24.71■■□□□ 1.55
PMS1-213ENST00000441310 CUX1P39880 1505 aa24.68■■□□□ 1.54
PMS1-213ENST00000441310 CLIP1P30622 1438 aa24.63■■□□□ 1.53
PMS1-213ENST00000441310 CADPSQ9ULU8 1353 aa24.62■■□□□ 1.53
PMS1-213ENST00000441310 KIF21BO75037 1637 aa24.58■■□□□ 1.52
PMS1-213ENST00000441310 BIVM-ERCC5R4GMW8 1640 aa24.58■■□□□ 1.52
PMS1-213ENST00000441310 DNAJC5BQ9UF47 199 aa24.56■■□□□ 1.52
PMS1-213ENST00000441310 CLSPNQ9HAW4 1339 aa24.51■■□□□ 1.51
PMS1-213ENST00000441310 KIF27Q86VH2 1401 aa24.5■■□□□ 1.51
PMS1-213ENST00000441310 APLP2Q06481 763 aa24.49■■□□□ 1.51
PMS1-213ENST00000441310 NESP48681 1621 aa24.46■■□□□ 1.51
PMS1-213ENST00000441310 CUX2O14529 1486 aa24.43■■□□□ 1.5
PMS1-213ENST00000441310 PRXQ9BXM0 1461 aa24.42■■□□□ 1.5
PMS1-213ENST00000441310 HNRNPUL2Q1KMD3 747 aaKnown RBP24.42■■□□□ 1.5
PMS1-213ENST00000441310 FANCD2Q9BXW9 1451 aa24.38■■□□□ 1.49
PMS1-213ENST00000441310 VPS8Q8N3P4 1428 aa24.38■■□□□ 1.49
PMS1-213ENST00000441310 BCANQ96GW7 911 aa24.37■■□□□ 1.49
PMS1-213ENST00000441310 FGD5Q6ZNL6 1462 aa24.36■■□□□ 1.49
PMS1-213ENST00000441310 IGF1RP08069 1367 aa24.31■■□□□ 1.48
PMS1-213ENST00000441310 PRKCSHP14314 528 aaPredicted RBP24.31■■□□□ 1.48
PMS1-213ENST00000441310 PRDM2Q13029 1718 aa24.27■■□□□ 1.48
PMS1-213ENST00000441310 ERICH3Q5RHP9 1530 aa24.27■■□□□ 1.48
PMS1-213ENST00000441310 RAD54L2Q9Y4B4 1467 aa24.26■■□□□ 1.47
PMS1-213ENST00000441310 CARMIL1Q5VZK9 1371 aa24.23■■□□□ 1.47
PMS1-213ENST00000441310 KANK4Q5T7N3 995 aaPredicted RBP24.22■■□□□ 1.47
PMS1-213ENST00000441310 P3H3Q8IVL6 736 aa24.22■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 88.5 ms