RNA–Protein interactions for RNA: ENST00000440118.1

SHROOM1-204, Transcript of shroom family member 1, humanhuman

TSL 2

Gene SHROOM1, Length 1,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-204ENST00000440118 SHANK2Q9UPX8 1470 aa30.86■■■□□ 2.53
SHROOM1-204ENST00000440118 DNMT1P26358 1616 aaKnown RBP30.86■■■□□ 2.53
SHROOM1-204ENST00000440118 ZNF142P52746 1687 aaPredicted RBP30.86■■■□□ 2.53
SHROOM1-204ENST00000440118 RNF17Q9BXT8 1623 aaKnown RBP30.85■■■□□ 2.53
SHROOM1-204ENST00000440118 WASHC2CQ9Y4E1 1318 aa30.85■■■□□ 2.53
SHROOM1-204ENST00000440118 DMRT2Q9Y5R5 561 aa30.84■■■□□ 2.53
SHROOM1-204ENST00000440118 DUOX2Q9NRD8 1548 aa30.83■■■□□ 2.53
SHROOM1-204ENST00000440118 CEP170BQ9Y4F5 1589 aaPredicted RBP30.82■■■□□ 2.52
SHROOM1-204ENST00000440118 TCOF1Q13428 1488 aaKnown RBP30.82■■■□□ 2.52
SHROOM1-204ENST00000440118 ZC3H13Q5T200 1668 aaKnown RBP30.81■■■□□ 2.52
SHROOM1-204ENST00000440118 DAPK1P53355 1430 aa30.81■■■□□ 2.52
SHROOM1-204ENST00000440118 CAMSAP1Q5T5Y3 1602 aa30.8■■■□□ 2.52
SHROOM1-204ENST00000440118 ABCC5O15440 1437 aa30.8■■■□□ 2.52
SHROOM1-204ENST00000440118 KIF15Q9NS87 1388 aa30.79■■■□□ 2.52
SHROOM1-204ENST00000440118 PZPP20742 1482 aa30.77■■■□□ 2.52
SHROOM1-204ENST00000440118 NCOA1Q15788 1441 aa30.76■■■□□ 2.51
SHROOM1-204ENST00000440118 CEP152O94986 1710 aa30.74■■■□□ 2.51
SHROOM1-204ENST00000440118 ABCC3O15438 1527 aa30.73■■■□□ 2.51
SHROOM1-204ENST00000440118 TNRQ92752 1358 aa30.72■■■□□ 2.51
SHROOM1-204ENST00000440118 FAM50AQ14320 339 aaKnown RBP30.72■■■□□ 2.51
SHROOM1-204ENST00000440118 FBXO41Q8TF61 875 aa30.72■■■□□ 2.51
SHROOM1-204ENST00000440118 RRP7BPQ9NSQ0 103 aa30.72■■■□□ 2.51
SHROOM1-204ENST00000440118 ERBINQ96RT1 1412 aa30.71■■■□□ 2.51
SHROOM1-204ENST00000440118 MROH1Q8NDA8 1641 aa30.7■■■□□ 2.51
SHROOM1-204ENST00000440118 PTPRTO14522 1441 aa30.7■■■□□ 2.5
SHROOM1-204ENST00000440118 A2ML1A8K2U0 1454 aa30.7■■■□□ 2.5
SHROOM1-204ENST00000440118 ANKRD30AQ9BXX3 1397 aa30.69■■■□□ 2.5
SHROOM1-204ENST00000440118 FBXO31Q5XUX0 539 aaPredicted RBP30.68■■■□□ 2.5
SHROOM1-204ENST00000440118 CHIC2Q9UKJ5 165 aa30.68■■■□□ 2.5
SHROOM1-204ENST00000440118 PLA2R1Q13018 1463 aa30.66■■■□□ 2.5
SHROOM1-204ENST00000440118 PRDM15P57071 1507 aaPredicted RBP30.64■■■□□ 2.5
SHROOM1-204ENST00000440118 CFAP65Q6ZU64 1925 aaKnown RBP30.64■■■□□ 2.5
SHROOM1-204ENST00000440118 CERKQ8TCT0 537 aa30.63■■■□□ 2.49
SHROOM1-204ENST00000440118 NCKAP5LQ9HCH0 1330 aa30.61■■■□□ 2.49
SHROOM1-204ENST00000440118 DEPDC5O75140 1603 aa30.61■■■□□ 2.49
SHROOM1-204ENST00000440118 POLR1AO95602 1720 aaPredicted RBP30.6■■■□□ 2.49
SHROOM1-204ENST00000440118 NLRP1Q9C000 1473 aa30.59■■■□□ 2.49
SHROOM1-204ENST00000440118 KANK1Q14678 1352 aa30.59■■■□□ 2.49
SHROOM1-204ENST00000440118 GRWD1Q9BQ67 446 aaKnown RBP eCLIP30.59■■■□□ 2.493e-8■■■■□ 21
SHROOM1-204ENST00000440118 PKD2Q13563 968 aa30.58■■■□□ 2.49
SHROOM1-204ENST00000440118 SPATA31D1Q6ZQQ2 1576 aa30.57■■■□□ 2.48
SHROOM1-204ENST00000440118 ADGRL2O95490 1459 aa30.56■■■□□ 2.48
SHROOM1-204ENST00000440118 ERVK-7P63135 1459 aa30.56■■■□□ 2.48
SHROOM1-204ENST00000440118 UGGT1Q9NYU2 1555 aa30.54■■■□□ 2.48
SHROOM1-204ENST00000440118 PPARGC1BQ86YN6 1023 aaKnown RBP30.52■■■□□ 2.48
SHROOM1-204ENST00000440118 THEMISQ8N1K5 641 aaPredicted RBP30.47■■■□□ 2.47
SHROOM1-204ENST00000440118 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP30.46■■■□□ 2.474e-6■■■■□ 23.5
SHROOM1-204ENST00000440118 LTBP4Q8N2S1 1624 aa30.45■■■□□ 2.47
SHROOM1-204ENST00000440118 ANKRD50Q9ULJ7 1429 aa30.45■■■□□ 2.46
SHROOM1-204ENST00000440118 ARHGAP31Q2M1Z3 1444 aa30.44■■■□□ 2.46
SHROOM1-204ENST00000440118 NEURL4Q96JN8 1562 aa30.43■■■□□ 2.46
SHROOM1-204ENST00000440118 ANKLE2Q86XL3 938 aa30.41■■■□□ 2.46
SHROOM1-204ENST00000440118 UBR1Q8IWV7 1749 aa30.41■■■□□ 2.46
SHROOM1-204ENST00000440118 VWDEQ8N2E2 1590 aa30.41■■■□□ 2.46
SHROOM1-204ENST00000440118 LMTK2Q8IWU2 1503 aa30.4■■■□□ 2.46
SHROOM1-204ENST00000440118 ZNF335Q9H4Z2 1342 aaPredicted RBP30.4■■■□□ 2.46
SHROOM1-204ENST00000440118 ITGAEP38570 1179 aa30.39■■■□□ 2.46
SHROOM1-204ENST00000440118 EFCAB6Q5THR3 1501 aa30.38■■■□□ 2.45
SHROOM1-204ENST00000440118 IQGAP1P46940 1657 aa30.36■■■□□ 2.45
SHROOM1-204ENST00000440118 IQSEC2Q5JU85 1478 aa30.35■■■□□ 2.45
SHROOM1-204ENST00000440118 PIK3C2BO00750 1634 aa30.33■■■□□ 2.45
SHROOM1-204ENST00000440118 ROCK1Q13464 1354 aa30.33■■■□□ 2.45
SHROOM1-204ENST00000440118 UNC13BO14795 1591 aa30.32■■■□□ 2.45
SHROOM1-204ENST00000440118 NPHP4O75161 1426 aaPredicted RBP30.32■■■□□ 2.44
SHROOM1-204ENST00000440118 TET3O43151 1660 aa30.31■■■□□ 2.44
SHROOM1-204ENST00000440118 STAG3Q9UJ98 1225 aa30.31■■■□□ 2.44
SHROOM1-204ENST00000440118 GCC2Q8IWJ2 1684 aa30.3■■■□□ 2.44
SHROOM1-204ENST00000440118 MED14O60244 1454 aa30.28■■■□□ 2.44
SHROOM1-204ENST00000440118 SYNMO15061 1565 aa30.26■■■□□ 2.43
SHROOM1-204ENST00000440118 SCAF11Q99590 1463 aaKnown RBP30.25■■■□□ 2.43
SHROOM1-204ENST00000440118 RPRD2Q5VT52 1461 aaKnown RBP30.25■■■□□ 2.43
SHROOM1-204ENST00000440118 KDM5AP29375 1690 aaKnown RBP30.24■■■□□ 2.43
SHROOM1-204ENST00000440118 CPS1P31327 1500 aa30.23■■■□□ 2.43
SHROOM1-204ENST00000440118 SLIT1O75093 1534 aa30.22■■■□□ 2.43
SHROOM1-204ENST00000440118 EID1Q9Y6B2 187 aa30.2■■■□□ 2.43
SHROOM1-204ENST00000440118 IQGAP3Q86VI3 1631 aa30.2■■■□□ 2.43
SHROOM1-204ENST00000440118 NOS1P29475 1434 aa30.2■■■□□ 2.42
SHROOM1-204ENST00000440118 ADGRB3O60242 1522 aa30.19■■■□□ 2.42
SHROOM1-204ENST00000440118 RRBP1Q9P2E9 1410 aaKnown RBP30.19■■■□□ 2.42
SHROOM1-204ENST00000440118 ARHGAP23Q9P227 1491 aa30.19■■■□□ 2.42
SHROOM1-204ENST00000440118 TXNDC2Q86VQ3 553 aa30.18■■■□□ 2.42
SHROOM1-204ENST00000440118 IDI1Q13907 227 aa30.16■■■□□ 2.42
SHROOM1-204ENST00000440118 E9PCH4 1651 aa30.16■■■□□ 2.42
SHROOM1-204ENST00000440118 UBAP1LF5GYI3 381 aa30.15■■■□□ 2.42
SHROOM1-204ENST00000440118 TMEM2Q9UHN6 1383 aa30.15■■■□□ 2.42
SHROOM1-204ENST00000440118 SLC52A1Q9NWF4 448 aa30.13■■■□□ 2.41
SHROOM1-204ENST00000440118 NUP155O75694 1391 aa30.13■■■□□ 2.41
SHROOM1-204ENST00000440118 MYO5BQ9ULV0 1848 aa30.12■■■□□ 2.41
SHROOM1-204ENST00000440118 LTKP29376 864 aa30.1■■■□□ 2.41
SHROOM1-204ENST00000440118 STRCP1A6NGW2 1772 aa30.08■■■□□ 2.41
SHROOM1-204ENST00000440118 SCAF1Q9H7N4 1312 aaKnown RBP30.03■■■□□ 2.4
SHROOM1-204ENST00000440118 CHGAP10645 457 aaKnown RBP30.02■■■□□ 2.4
SHROOM1-204ENST00000440118 TMEM131LA2VDJ0 1609 aa30.01■■■□□ 2.39
SHROOM1-204ENST00000440118 BCANQ96GW7 911 aa30.01■■■□□ 2.39
SHROOM1-204ENST00000440118 SPHKAPQ2M3C7 1700 aa30■■■□□ 2.39
SHROOM1-204ENST00000440118 TOM1O60784 492 aa29.99■■■□□ 2.39
SHROOM1-204ENST00000440118 PPP1R15AO75807 674 aaPredicted RBP29.99■■■□□ 2.39
SHROOM1-204ENST00000440118 NAIPQ13075 1403 aa29.97■■■□□ 2.39
SHROOM1-204ENST00000440118 LRRC7Q96NW7 1537 aa29.96■■■□□ 2.39
SHROOM1-204ENST00000440118 PIP4K2BP78356 416 aa29.95■■■□□ 2.39
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms