RNA–Protein interactions for RNA: ENST00000439316.6

CLCNKA-203, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 2 BASIC

Gene CLCNKA, Length 1,997 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-203ENST00000439316 KIF7Q2M1P5 1343 aa22.59■■□□□ 1.21
CLCNKA-203ENST00000439316 ERICH6BQ5W0A0 696 aa22.56■■□□□ 1.2
CLCNKA-203ENST00000439316 ADGRL1O94910 1474 aa22.56■■□□□ 1.2
CLCNKA-203ENST00000439316 AFAP1Q8N556 730 aa22.55■■□□□ 1.2
CLCNKA-203ENST00000439316 SCAPERQ9BY12 1400 aa22.53■■□□□ 1.2
CLCNKA-203ENST00000439316 PLXNC1O60486 1568 aa22.53■■□□□ 1.2
CLCNKA-203ENST00000439316 ZBED9Q6R2W3 1325 aa22.53■■□□□ 1.2
CLCNKA-203ENST00000439316 MRS2Q9HD23 443 aa22.52■■□□□ 1.2
CLCNKA-203ENST00000439316 SPAG9O60271 1321 aaKnown RBP22.5■■□□□ 1.19
CLCNKA-203ENST00000439316 BCORL1Q5H9F3 1711 aa22.49■■□□□ 1.19
CLCNKA-203ENST00000439316 KDM5CP41229 1560 aa22.49■■□□□ 1.19
CLCNKA-203ENST00000439316 CFAP74Q9C0B2 1584 aa22.49■■□□□ 1.19
CLCNKA-203ENST00000439316 IRX6P78412 446 aaPredicted RBP22.48■■□□□ 1.19
CLCNKA-203ENST00000439316 MAP3K4Q9Y6R4 1608 aa22.47■■□□□ 1.19
CLCNKA-203ENST00000439316 DHX29Q7Z478 1369 aaKnown RBP22.47■■□□□ 1.19
CLCNKA-203ENST00000439316 GLI2P10070 1586 aa22.47■■□□□ 1.19
CLCNKA-203ENST00000439316 USP47Q96K76 1375 aa22.47■■□□□ 1.19
CLCNKA-203ENST00000439316 FAM9BQ8IZU0 186 aa22.47■■□□□ 1.19
CLCNKA-203ENST00000439316 ZFYVE16Q7Z3T8 1539 aa22.46■■□□□ 1.19
CLCNKA-203ENST00000439316 KDM5DQ9BY66 1539 aa22.46■■□□□ 1.19
CLCNKA-203ENST00000439316 RTEL1-TNFRSF6BF6WH68 1400 aa22.46■■□□□ 1.19
CLCNKA-203ENST00000439316 UHRF1BP1Q6BDS2 1440 aa22.45■■□□□ 1.18
CLCNKA-203ENST00000439316 DUOX2Q9NRD8 1548 aa22.45■■□□□ 1.18
CLCNKA-203ENST00000439316 FAM69CQ0P6D2 419 aa22.45■■□□□ 1.18
CLCNKA-203ENST00000439316 DIP2BQ9P265 1576 aa22.45■■□□□ 1.18
CLCNKA-203ENST00000439316 NUP155O75694 1391 aa22.44■■□□□ 1.18
CLCNKA-203ENST00000439316 PKD2Q13563 968 aa22.44■■□□□ 1.18
CLCNKA-203ENST00000439316 RALGAPBQ86X10 1494 aa22.43■■□□□ 1.18
CLCNKA-203ENST00000439316 INO80Q9ULG1 1556 aaPredicted RBP22.42■■□□□ 1.18
CLCNKA-203ENST00000439316 ATP7AQ04656 1500 aa22.42■■□□□ 1.18
CLCNKA-203ENST00000439316 PPP4R2Q9NY27 417 aa22.42■■□□□ 1.18
CLCNKA-203ENST00000439316 ARID4BQ4LE39 1312 aaPredicted RBP22.42■■□□□ 1.18
CLCNKA-203ENST00000439316 NEO1Q92859 1461 aa22.41■■□□□ 1.18
CLCNKA-203ENST00000439316 ZNF518AQ6AHZ1 1483 aa22.41■■□□□ 1.18
CLCNKA-203ENST00000439316 MYT1LQ9UL68 1186 aa22.4■■□□□ 1.18
CLCNKA-203ENST00000439316 ERBINQ96RT1 1412 aa22.39■■□□□ 1.18
CLCNKA-203ENST00000439316 POGZQ7Z3K3 1410 aa22.38■■□□□ 1.17
CLCNKA-203ENST00000439316 TSPOAP1O95153 1857 aa22.37■■□□□ 1.17
CLCNKA-203ENST00000439316 UNC13BO14795 1591 aa22.36■■□□□ 1.17
CLCNKA-203ENST00000439316 KIDINS220Q9ULH0 1771 aa22.36■■□□□ 1.17
CLCNKA-203ENST00000439316 FANCIQ9NVI1 1328 aa22.34■■□□□ 1.17
CLCNKA-203ENST00000439316 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.34■■□□□ 1.17
CLCNKA-203ENST00000439316 ROCK2O75116 1388 aaKnown RBP22.34■■□□□ 1.17
CLCNKA-203ENST00000439316 SMG6Q86US8 1419 aaKnown RBP22.34■■□□□ 1.17
CLCNKA-203ENST00000439316 FAM135AQ9P2D6 1515 aa22.33■■□□□ 1.17
CLCNKA-203ENST00000439316 RAPGEF3O95398 923 aa22.32■■□□□ 1.16
CLCNKA-203ENST00000439316 ZNF326Q5BKZ1 582 aaKnown RBP22.32■■□□□ 1.16
CLCNKA-203ENST00000439316 KIF13AQ9H1H9 1805 aa22.31■■□□□ 1.16
CLCNKA-203ENST00000439316 PPRC1Q5VV67 1664 aaKnown RBP22.3■■□□□ 1.16
CLCNKA-203ENST00000439316 HECW2Q9P2P5 1572 aa22.29■■□□□ 1.16
CLCNKA-203ENST00000439316 MAGI2Q86UL8 1455 aa22.29■■□□□ 1.16
CLCNKA-203ENST00000439316 MLH3Q9UHC1 1453 aa22.29■■□□□ 1.16
CLCNKA-203ENST00000439316 MSH5O43196 834 aa22.29■■□□□ 1.16
CLCNKA-203ENST00000439316 IQGAP3Q86VI3 1631 aa22.28■■□□□ 1.16
CLCNKA-203ENST00000439316 RICTORQ6R327 1708 aa22.28■■□□□ 1.16
CLCNKA-203ENST00000439316 E9PCH4 1651 aa22.27■■□□□ 1.15
CLCNKA-203ENST00000439316 CARD11Q9BXL7 1154 aa22.25■■□□□ 1.15
CLCNKA-203ENST00000439316 POLR3GLQ9BT43 218 aa22.24■■□□□ 1.15
CLCNKA-203ENST00000439316 KIF3BO15066 747 aa22.23■■□□□ 1.15
CLCNKA-203ENST00000439316 NUDCQ9Y266 331 aa22.23■■□□□ 1.15
CLCNKA-203ENST00000439316 DEPDC5O75140 1603 aa22.23■■□□□ 1.15
CLCNKA-203ENST00000439316 RNF123Q5XPI4 1314 aa22.23■■□□□ 1.15
CLCNKA-203ENST00000439316 EIF2AK4Q9P2K8 1649 aaKnown RBP22.23■■□□□ 1.15
CLCNKA-203ENST00000439316 A2MP01023 1474 aa22.22■■□□□ 1.15
CLCNKA-203ENST00000439316 B4GALNT3Q6L9W6 998 aa22.22■■□□□ 1.15
CLCNKA-203ENST00000439316 ABCA6Q8N139 1617 aa22.22■■□□□ 1.15
CLCNKA-203ENST00000439316 PNISRQ8TF01 805 aaKnown RBP22.2■■□□□ 1.14
CLCNKA-203ENST00000439316 KTN1Q86UP2 1357 aaKnown RBP22.2■■□□□ 1.14
CLCNKA-203ENST00000439316 FRMPD1Q5SYB0 1578 aa22.2■■□□□ 1.14
CLCNKA-203ENST00000439316 TRPM1Q7Z4N2 1603 aa22.18■■□□□ 1.14
CLCNKA-203ENST00000439316 LRPPRCP42704 1394 aaKnown RBP22.17■■□□□ 1.14
CLCNKA-203ENST00000439316 ST20-MTHFSA0A0A6YYL1 179 aa22.16■■□□□ 1.14
CLCNKA-203ENST00000439316 MROH1Q8NDA8 1641 aa22.16■■□□□ 1.14
CLCNKA-203ENST00000439316 BRD4O60885 1362 aaPredicted RBP22.15■■□□□ 1.14
CLCNKA-203ENST00000439316 DIP2CQ9Y2E4 1556 aa22.15■■□□□ 1.14
CLCNKA-203ENST00000439316 CNGB1Q14028 1251 aaPredicted RBP22.14■■□□□ 1.14
CLCNKA-203ENST00000439316 DCAF11Q8TEB1 546 aa22.14■■□□□ 1.14
CLCNKA-203ENST00000439316 KANK1Q14678 1352 aa22.14■■□□□ 1.14
CLCNKA-203ENST00000439316 PRDM15P57071 1507 aaPredicted RBP22.14■■□□□ 1.13
CLCNKA-203ENST00000439316 PRAG1Q86YV5 1406 aa22.14■■□□□ 1.13
CLCNKA-203ENST00000439316 YEATS2Q9ULM3 1422 aa22.14■■□□□ 1.13
CLCNKA-203ENST00000439316 VWDEQ8N2E2 1590 aa22.13■■□□□ 1.13
CLCNKA-203ENST00000439316 TMC1Q8TDI8 760 aa22.13■■□□□ 1.13
CLCNKA-203ENST00000439316 KDM2AQ9Y2K7 1162 aa22.13■■□□□ 1.13
CLCNKA-203ENST00000439316 MYBBP1AQ9BQG0 1328 aaKnown RBP22.13■■□□□ 1.13
CLCNKA-203ENST00000439316 PLA2R1Q13018 1463 aa22.13■■□□□ 1.13
CLCNKA-203ENST00000439316 ZMYM4Q5VZL5 1548 aa22.12■■□□□ 1.13
CLCNKA-203ENST00000439316 RALBP1Q15311 655 aa22.12■■□□□ 1.13
CLCNKA-203ENST00000439316 LAMC1P11047 1609 aa22.11■■□□□ 1.13
CLCNKA-203ENST00000439316 RNF17Q9BXT8 1623 aaKnown RBP22.11■■□□□ 1.13
CLCNKA-203ENST00000439316 CCDC144AA2RUR9 1427 aa22.11■■□□□ 1.13
CLCNKA-203ENST00000439316 TET3O43151 1660 aa22.1■■□□□ 1.13
CLCNKA-203ENST00000439316 GPRASP1Q5JY77 1395 aa22.08■■□□□ 1.13
CLCNKA-203ENST00000439316 COL17A1Q9UMD9 1497 aaPredicted RBP22.08■■□□□ 1.12
CLCNKA-203ENST00000439316 GGT6Q6P531 493 aa22.07■■□□□ 1.12
CLCNKA-203ENST00000439316 DNAJC5Q9H3Z4 198 aa22.07■■□□□ 1.12
CLCNKA-203ENST00000439316 ATP10AO60312 1499 aa22.06■■□□□ 1.12
CLCNKA-203ENST00000439316 PARD3Q8TEW0 1356 aa22.05■■□□□ 1.12
CLCNKA-203ENST00000439316 CEP152O94986 1710 aa22.05■■□□□ 1.12
CLCNKA-203ENST00000439316 SPHKAPQ2M3C7 1700 aa22.02■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms