RNA–Protein interactions for RNA: ENST00000439316.6

CLCNKA-203, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 2 BASIC

Gene CLCNKA, Length 1,997 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-203ENST00000439316 NISCHQ9Y2I1 1504 aa35.07■■■■□ 3.21
CLCNKA-203ENST00000439316 CCDC180Q9P1Z9 1646 aa30.56■■■□□ 2.48
CLCNKA-203ENST00000439316 ZCCHC6Q5VYS8 1495 aaKnown RBP29.45■■■□□ 2.3
CLCNKA-203ENST00000439316 DCAF8L2P0C7V8 631 aa29.1■■■□□ 2.25
CLCNKA-203ENST00000439316 ABCC9O60706 1549 aa29.02■■■□□ 2.24
CLCNKA-203ENST00000439316 DCAF1Q9Y4B6 1507 aa28.94■■■□□ 2.22
CLCNKA-203ENST00000439316 SHROOM4Q9ULL8 1493 aa28.73■■■□□ 2.19
CLCNKA-203ENST00000439316 MYO15BQ96JP2 1530 aa28.6■■■□□ 2.17
CLCNKA-203ENST00000439316 NACADO15069 1562 aa28.47■■■□□ 2.15
CLCNKA-203ENST00000439316 RB1CC1Q8TDY2 1594 aa28.25■■■□□ 2.11
CLCNKA-203ENST00000439316 SUPT5HO00267 1087 aaKnown RBP28.2■■■□□ 2.11
CLCNKA-203ENST00000439316 SCRIBQ14160 1630 aa28.18■■■□□ 2.1
CLCNKA-203ENST00000439316 UNC13AQ9UPW8 1703 aa27.75■■■□□ 2.03
CLCNKA-203ENST00000439316 CHIC1Q5VXU3 224 aa27.6■■■□□ 2.01
CLCNKA-203ENST00000439316 BICRAQ9NZM4 1560 aa27.43■■□□□ 1.98
CLCNKA-203ENST00000439316 PABPN1Q86U42 306 aaKnown RBP eCLIP27.39■■□□□ 1.98
CLCNKA-203ENST00000439316 CECR2Q9BXF3 1484 aa27.3■■□□□ 1.96
CLCNKA-203ENST00000439316 RSF1Q96T23 1441 aaPredicted RBP27.21■■□□□ 1.95
CLCNKA-203ENST00000439316 MROH2BQ7Z745 1585 aa27.12■■□□□ 1.93
CLCNKA-203ENST00000439316 BAZ1AQ9NRL2 1556 aaPredicted RBP27.07■■□□□ 1.92
CLCNKA-203ENST00000439316 HRCP23327 699 aa26.98■■□□□ 1.91
CLCNKA-203ENST00000439316 SMARCA4P51532 1647 aa26.97■■□□□ 1.91
CLCNKA-203ENST00000439316 WIZO95785 1651 aa26.92■■□□□ 1.9
CLCNKA-203ENST00000439316 PCGF6Q9BYE7 350 aa26.77■■□□□ 1.88
CLCNKA-203ENST00000439316 LOC105371045A0A1W2PR82 267 aa26.68■■□□□ 1.86
CLCNKA-203ENST00000439316 PEG3Q9GZU2 1588 aa26.61■■□□□ 1.85
CLCNKA-203ENST00000439316 EIF4G1Q04637 1599 aaKnown RBP26.61■■□□□ 1.85
CLCNKA-203ENST00000439316 TOP2AP11388 1531 aaKnown RBP26.58■■□□□ 1.85
CLCNKA-203ENST00000439316 ATAD2BQ9ULI0 1458 aa26.54■■□□□ 1.84
CLCNKA-203ENST00000439316 SMARCA2P51531 1590 aa26.5■■□□□ 1.83
CLCNKA-203ENST00000439316 BAZ1BQ9UIG0 1483 aaKnown RBP26.39■■□□□ 1.82
CLCNKA-203ENST00000439316 CCDC88BA6NC98 1476 aa26.35■■□□□ 1.81
CLCNKA-203ENST00000439316 TRIM26Q12899 539 aaPredicted RBP26.34■■□□□ 1.81
CLCNKA-203ENST00000439316 TRIM41Q8WV44 630 aa26.33■■□□□ 1.81
CLCNKA-203ENST00000439316 NCAPD3P42695 1498 aa26.29■■□□□ 1.8
CLCNKA-203ENST00000439316 PPARGC1BQ86YN6 1023 aaKnown RBP26.26■■□□□ 1.79
CLCNKA-203ENST00000439316 HMGXB3Q12766 1538 aa26.24■■□□□ 1.79
CLCNKA-203ENST00000439316 CC2D2AQ9P2K1 1620 aa26.24■■□□□ 1.79
CLCNKA-203ENST00000439316 FAM9AQ8IZU1 332 aaPredicted RBP26.01■■□□□ 1.75
CLCNKA-203ENST00000439316 ZEB1P37275 1124 aaPredicted RBP25.86■■□□□ 1.73
CLCNKA-203ENST00000439316 ABCC8Q09428 1581 aa25.82■■□□□ 1.72
CLCNKA-203ENST00000439316 CFTRP13569 1480 aa25.71■■□□□ 1.71
CLCNKA-203ENST00000439316 EHMT2Q96KQ7 1210 aa25.69■■□□□ 1.7
CLCNKA-203ENST00000439316 DNAJC5BQ9UF47 199 aa25.67■■□□□ 1.7
CLCNKA-203ENST00000439316 CADPSQ9ULU8 1353 aa25.64■■□□□ 1.69
CLCNKA-203ENST00000439316 WRNQ14191 1432 aaPredicted RBP eCLIP25.61■■□□□ 1.69
CLCNKA-203ENST00000439316 PRDM2Q13029 1718 aa25.59■■□□□ 1.69
CLCNKA-203ENST00000439316 SYNJ1O43426 1573 aa25.52■■□□□ 1.68
CLCNKA-203ENST00000439316 NESP48681 1621 aa25.47■■□□□ 1.67
CLCNKA-203ENST00000439316 LAMC3Q9Y6N6 1575 aa25.4■■□□□ 1.66
CLCNKA-203ENST00000439316 TOP2BQ02880 1626 aa25.4■■□□□ 1.66
CLCNKA-203ENST00000439316 EEA1Q15075 1411 aa25.39■■□□□ 1.65
CLCNKA-203ENST00000439316 FANCD2Q9BXW9 1451 aa25.36■■□□□ 1.65
CLCNKA-203ENST00000439316 BIVM-ERCC5R4GMW8 1640 aa25.36■■□□□ 1.65
CLCNKA-203ENST00000439316 SOGA1O94964 1423 aa25.36■■□□□ 1.65
CLCNKA-203ENST00000439316 CUX1P39880 1505 aa25.36■■□□□ 1.65
CLCNKA-203ENST00000439316 CEP162Q5TB80 1403 aa25.35■■□□□ 1.65
CLCNKA-203ENST00000439316 TNIKQ9UKE5 1360 aa25.33■■□□□ 1.65
CLCNKA-203ENST00000439316 RUSC2Q8N2Y8 1516 aa25.24■■□□□ 1.63
CLCNKA-203ENST00000439316 PDS5BQ9NTI5 1447 aa25.22■■□□□ 1.63
CLCNKA-203ENST00000439316 CSRNP3Q8WYN3 585 aa25.2■■□□□ 1.63
CLCNKA-203ENST00000439316 CEP164Q9UPV0 1460 aa25.2■■□□□ 1.62
CLCNKA-203ENST00000439316 GOLGA3Q08378 1498 aa25.18■■□□□ 1.62
CLCNKA-203ENST00000439316 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.16■■□□□ 1.62
CLCNKA-203ENST00000439316 KIF21AQ7Z4S6 1674 aa25.16■■□□□ 1.62
CLCNKA-203ENST00000439316 CCER1Q8TC90 406 aaPredicted RBP25.13■■□□□ 1.61
CLCNKA-203ENST00000439316 DNMBPQ6XZF7 1577 aa25.11■■□□□ 1.61
CLCNKA-203ENST00000439316 TOPBP1Q92547 1522 aa25.09■■□□□ 1.61
CLCNKA-203ENST00000439316 FGD5Q6ZNL6 1462 aa25.08■■□□□ 1.61
CLCNKA-203ENST00000439316 KIF21BO75037 1637 aa25.06■■□□□ 1.6
CLCNKA-203ENST00000439316 URB2Q14146 1524 aaKnown RBP25.05■■□□□ 1.6
CLCNKA-203ENST00000439316 UBTFP17480 764 aaKnown RBP25.03■■□□□ 1.6
CLCNKA-203ENST00000439316 POLA1P09884 1462 aaPredicted RBP24.97■■□□□ 1.59
CLCNKA-203ENST00000439316 KIF27Q86VH2 1401 aa24.96■■□□□ 1.59
CLCNKA-203ENST00000439316 TTBK1Q5TCY1 1321 aaPredicted RBP24.94■■□□□ 1.58
CLCNKA-203ENST00000439316 CUX2O14529 1486 aa24.92■■□□□ 1.58
CLCNKA-203ENST00000439316 RAD54L2Q9Y4B4 1467 aa24.92■■□□□ 1.58
CLCNKA-203ENST00000439316 MRC2Q9UBG0 1479 aa24.89■■□□□ 1.58
CLCNKA-203ENST00000439316 SCAF1Q9H7N4 1312 aaKnown RBP24.87■■□□□ 1.57
CLCNKA-203ENST00000439316 ERCC6Q03468 1493 aa24.86■■□□□ 1.57
CLCNKA-203ENST00000439316 ABCA10Q8WWZ4 1543 aa24.84■■□□□ 1.57
CLCNKA-203ENST00000439316 CLIP1P30622 1438 aa24.84■■□□□ 1.57
CLCNKA-203ENST00000439316 RAPGEF2Q9Y4G8 1499 aa24.8■■□□□ 1.56
CLCNKA-203ENST00000439316 VPS8Q8N3P4 1428 aa24.79■■□□□ 1.56
CLCNKA-203ENST00000439316 PRXQ9BXM0 1461 aa24.78■■□□□ 1.56
CLCNKA-203ENST00000439316 WDR97A6NE52 1622 aa24.76■■□□□ 1.55
CLCNKA-203ENST00000439316 WDR62O43379 1518 aa24.76■■□□□ 1.55
CLCNKA-203ENST00000439316 IGF1RP08069 1367 aa24.76■■□□□ 1.55
CLCNKA-203ENST00000439316 DIEXFQ68CQ4 756 aaKnown RBP24.73■■□□□ 1.55
CLCNKA-203ENST00000439316 ERICH3Q5RHP9 1530 aa24.71■■□□□ 1.55
CLCNKA-203ENST00000439316 TARBP1Q13395 1621 aaKnown RBP24.71■■□□□ 1.55
CLCNKA-203ENST00000439316 THOC2Q8NI27 1593 aaKnown RBP24.71■■□□□ 1.55
CLCNKA-203ENST00000439316 TDRD9Q8NDG6 1382 aaKnown RBP24.68■■□□□ 1.54
CLCNKA-203ENST00000439316 ABCA5Q8WWZ7 1642 aa24.64■■□□□ 1.54
CLCNKA-203ENST00000439316 ACIN1Q9UKV3 1341 aaKnown RBP24.64■■□□□ 1.53
CLCNKA-203ENST00000439316 CARMIL1Q5VZK9 1371 aa24.63■■□□□ 1.53
CLCNKA-203ENST00000439316 GAPVD1Q14C86 1478 aa24.61■■□□□ 1.53
CLCNKA-203ENST00000439316 IFT140Q96RY7 1462 aa24.58■■□□□ 1.53
CLCNKA-203ENST00000439316 PELP1Q8IZL8 1130 aaKnown RBP24.58■■□□□ 1.52
CLCNKA-203ENST00000439316 ZNF316A6NFI3 1004 aaPredicted RBP24.56■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms