RNA–Protein interactions for RNA: ENST00000418628.5

PTCD3-204, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 532 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-204ENST00000418628 MLECQ14165 292 aa28.66■■■□□ 2.18
PTCD3-204ENST00000418628 CNTLNQ9NXG0 1405 aa28.65■■■□□ 2.18
PTCD3-204ENST00000418628 CEP152O94986 1710 aa28.65■■■□□ 2.18
PTCD3-204ENST00000418628 GCC2Q8IWJ2 1684 aa28.64■■■□□ 2.18
PTCD3-204ENST00000418628 SETD1BQ9UPS6 1966 aaKnown RBP28.64■■■□□ 2.17
PTCD3-204ENST00000418628 KDM5DQ9BY66 1539 aa28.64■■■□□ 2.17
PTCD3-204ENST00000418628 ROCK1Q13464 1354 aa28.63■■■□□ 2.17
PTCD3-204ENST00000418628 AEBP2Q6ZN18 517 aaPredicted RBP28.59■■■□□ 2.17
PTCD3-204ENST00000418628 VWDEQ8N2E2 1590 aa28.58■■■□□ 2.17
PTCD3-204ENST00000418628 PREX1Q8TCU6 1659 aa28.58■■■□□ 2.17
PTCD3-204ENST00000418628 UNC13BO14795 1591 aa28.58■■■□□ 2.17
PTCD3-204ENST00000418628 CHIC2Q9UKJ5 165 aa28.57■■■□□ 2.16
PTCD3-204ENST00000418628 ABCC3O15438 1527 aa28.56■■■□□ 2.16
PTCD3-204ENST00000418628 CAMSAP1Q5T5Y3 1602 aa28.56■■■□□ 2.16
PTCD3-204ENST00000418628 PPP6R1Q9UPN7 881 aa28.56■■■□□ 2.16
PTCD3-204ENST00000418628 KIF3BO15066 747 aa28.55■■■□□ 2.16
PTCD3-204ENST00000418628 RRP7BPQ9NSQ0 103 aa28.54■■■□□ 2.16
PTCD3-204ENST00000418628 ANKRD50Q9ULJ7 1429 aa28.52■■■□□ 2.16
PTCD3-204ENST00000418628 GGT6Q6P531 493 aa28.5■■■□□ 2.15
PTCD3-204ENST00000418628 ZNF142P52746 1687 aaPredicted RBP28.47■■■□□ 2.15
PTCD3-204ENST00000418628 LMTK2Q8IWU2 1503 aa28.47■■■□□ 2.15
PTCD3-204ENST00000418628 PZPP20742 1482 aa28.46■■■□□ 2.15
PTCD3-204ENST00000418628 CFAP65Q6ZU64 1925 aaKnown RBP28.45■■■□□ 2.15
PTCD3-204ENST00000418628 NPATQ14207 1427 aa28.45■■■□□ 2.15
PTCD3-204ENST00000418628 ZMYM3Q14202 1370 aa28.45■■■□□ 2.14
PTCD3-204ENST00000418628 LMTK3Q96Q04 1460 aa28.45■■■□□ 2.14
PTCD3-204ENST00000418628 IQGAP3Q86VI3 1631 aa28.44■■■□□ 2.14
PTCD3-204ENST00000418628 MYO3AQ8NEV4 1616 aa28.44■■■□□ 2.14
PTCD3-204ENST00000418628 TET3O43151 1660 aa28.42■■■□□ 2.14
PTCD3-204ENST00000418628 ESF1Q9H501 851 aaKnown RBP28.41■■■□□ 2.14
PTCD3-204ENST00000418628 HFM1A2PYH4 1435 aa28.41■■■□□ 2.14
PTCD3-204ENST00000418628 NAIPQ13075 1403 aa28.41■■■□□ 2.14
PTCD3-204ENST00000418628 CEBPAP49715 358 aaPredicted RBP28.4■■■□□ 2.14
PTCD3-204ENST00000418628 EFCAB6Q5THR3 1501 aa28.39■■■□□ 2.14
PTCD3-204ENST00000418628 ITGAEP38570 1179 aa28.39■■■□□ 2.14
PTCD3-204ENST00000418628 SPATA31D1Q6ZQQ2 1576 aa28.39■■■□□ 2.14
PTCD3-204ENST00000418628 ARHGAP31Q2M1Z3 1444 aa28.36■■■□□ 2.13
PTCD3-204ENST00000418628 WASHC2CQ9Y4E1 1318 aa28.35■■■□□ 2.13
PTCD3-204ENST00000418628 E9PCH4 1651 aa28.32■■■□□ 2.12
PTCD3-204ENST00000418628 CEP170BQ9Y4F5 1589 aaPredicted RBP28.3■■■□□ 2.12
PTCD3-204ENST00000418628 ERVK-7P63135 1459 aa28.3■■■□□ 2.12
PTCD3-204ENST00000418628 KANK1Q14678 1352 aa28.3■■■□□ 2.12
PTCD3-204ENST00000418628 UHRF1BP1Q6BDS2 1440 aa28.28■■■□□ 2.12
PTCD3-204ENST00000418628 PLPPR3Q6T4P5 718 aa28.27■■■□□ 2.12
PTCD3-204ENST00000418628 RPRD2Q5VT52 1461 aaKnown RBP28.25■■■□□ 2.11
PTCD3-204ENST00000418628 STRCQ7RTU9 1775 aa28.24■■■□□ 2.11
PTCD3-204ENST00000418628 SYNMO15061 1565 aa28.24■■■□□ 2.11
PTCD3-204ENST00000418628 GRWD1Q9BQ67 446 aaKnown RBP eCLIP28.21■■■□□ 2.113e-6■□□□□ 8.9
PTCD3-204ENST00000418628 KDM5AP29375 1690 aaKnown RBP28.21■■■□□ 2.11
PTCD3-204ENST00000418628 TNRQ92752 1358 aa28.21■■■□□ 2.11
PTCD3-204ENST00000418628 UBR1Q8IWV7 1749 aa28.2■■■□□ 2.1
PTCD3-204ENST00000418628 A2ML1A8K2U0 1454 aa28.2■■■□□ 2.1
PTCD3-204ENST00000418628 NLRP1Q9C000 1473 aa28.2■■■□□ 2.1
PTCD3-204ENST00000418628 SPHKAPQ2M3C7 1700 aa28.19■■■□□ 2.1
PTCD3-204ENST00000418628 FBXO31Q5XUX0 539 aaPredicted RBP28.19■■■□□ 2.1
PTCD3-204ENST00000418628 PIK3C2BO00750 1634 aa28.18■■■□□ 2.1
PTCD3-204ENST00000418628 NOS1P29475 1434 aa28.18■■■□□ 2.1
PTCD3-204ENST00000418628 POLR1AO95602 1720 aaPredicted RBP28.15■■■□□ 2.1
PTCD3-204ENST00000418628 NUP155O75694 1391 aa28.14■■■□□ 2.1
PTCD3-204ENST00000418628 MYO5BQ9ULV0 1848 aa28.13■■■□□ 2.09
PTCD3-204ENST00000418628 PLA2R1Q13018 1463 aa28.1■■■□□ 2.09
PTCD3-204ENST00000418628 SETD5Q9C0A6 1442 aa28.09■■■□□ 2.09
PTCD3-204ENST00000418628 UGGT1Q9NYU2 1555 aa28.08■■■□□ 2.09
PTCD3-204ENST00000418628 HSPA2P54652 639 aa28.06■■■□□ 2.08
PTCD3-204ENST00000418628 ADGRB3O60242 1522 aa28.03■■■□□ 2.08
PTCD3-204ENST00000418628 TMEM131LA2VDJ0 1609 aa28.01■■■□□ 2.07
PTCD3-204ENST00000418628 NEURL4Q96JN8 1562 aa28.01■■■□□ 2.07
PTCD3-204ENST00000418628 TRPM2O94759 1503 aa28.01■■■□□ 2.07
PTCD3-204ENST00000418628 PTPRTO14522 1441 aa28.01■■■□□ 2.07
PTCD3-204ENST00000418628 RAB3GAP2Q9H2M9 1393 aa27.99■■■□□ 2.07
PTCD3-204ENST00000418628 SLIT1O75093 1534 aa27.97■■■□□ 2.07
PTCD3-204ENST00000418628 CLTCL1P53675 1640 aa27.97■■■□□ 2.07
PTCD3-204ENST00000418628 ARHGAP23Q9P227 1491 aa27.96■■■□□ 2.07
PTCD3-204ENST00000418628 KIF1BO60333 1816 aa27.96■■■□□ 2.07
PTCD3-204ENST00000418628 ACIN1Q9UKV3 1341 aaKnown RBP27.94■■■□□ 2.06
PTCD3-204ENST00000418628 IQGAP1P46940 1657 aa27.9■■■□□ 2.06
PTCD3-204ENST00000418628 IDI1Q13907 227 aa27.89■■■□□ 2.06
PTCD3-204ENST00000418628 SLC52A1Q9NWF4 448 aa27.89■■■□□ 2.06
PTCD3-204ENST00000418628 TRIM52Q96A61 297 aa27.88■■■□□ 2.05
PTCD3-204ENST00000418628 MED14O60244 1454 aa27.88■■■□□ 2.05
PTCD3-204ENST00000418628 HRCP23327 699 aa27.87■■■□□ 2.05
PTCD3-204ENST00000418628 THEMISQ8N1K5 641 aaPredicted RBP27.85■■■□□ 2.05
PTCD3-204ENST00000418628 PKD2Q13563 968 aa27.84■■■□□ 2.05
PTCD3-204ENST00000418628 SLC4A1APQ9BWU0 796 aaKnown RBP27.84■■■□□ 2.05
PTCD3-204ENST00000418628 SCAF11Q99590 1463 aaKnown RBP27.82■■■□□ 2.04
PTCD3-204ENST00000418628 TMEM2Q9UHN6 1383 aa27.81■■■□□ 2.04
PTCD3-204ENST00000418628 ZFYVE9O95405 1425 aa27.81■■■□□ 2.04
PTCD3-204ENST00000418628 MPHOSPH9Q99550 1183 aa27.8■■■□□ 2.04
PTCD3-204ENST00000418628 IFT172Q9UG01 1749 aa27.78■■■□□ 2.04
PTCD3-204ENST00000418628 NCKAP5LQ9HCH0 1330 aa27.77■■■□□ 2.04
PTCD3-204ENST00000418628 PPLO60437 1756 aa27.77■■■□□ 2.04
PTCD3-204ENST00000418628 DMRT2Q9Y5R5 561 aa27.75■■■□□ 2.03
PTCD3-204ENST00000418628 NPHP4O75161 1426 aaPredicted RBP27.74■■■□□ 2.03
PTCD3-204ENST00000418628 NEXMIFQ5QGS0 1516 aa27.73■■■□□ 2.03
PTCD3-204ENST00000418628 TRIM26Q12899 539 aaPredicted RBP27.73■■■□□ 2.03
PTCD3-204ENST00000418628 ANKLE2Q86XL3 938 aa27.72■■■□□ 2.03
PTCD3-204ENST00000418628 STRCP1A6NGW2 1772 aa27.71■■■□□ 2.03
PTCD3-204ENST00000418628 LTBP4Q8N2S1 1624 aa27.7■■■□□ 2.03
PTCD3-204ENST00000418628 RIMS2Q9UQ26 1411 aa27.69■■■□□ 2.02
PTCD3-204ENST00000418628 LTKP29376 864 aa27.69■■■□□ 2.02
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms