RNA–Protein interactions for RNA: ENST00000409076.6

SNX13-201, Transcript of sorting nexin 13, humanhuman

TSL 2

Gene SNX13, Length 3,818 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX13-201ENST00000409076 STK26Q9P289 416 aa10.82□□□□□ -0.68
SNX13-201ENST00000409076 SMG6Q86US8 1419 aaKnown RBP10.82□□□□□ -0.68
SNX13-201ENST00000409076 TRAK1Q9UPV9 953 aa10.81□□□□□ -0.68
SNX13-201ENST00000409076 ABCA10Q8WWZ4 1543 aa10.8□□□□□ -0.68
SNX13-201ENST00000409076 ZNF608Q9ULD9 1512 aaPredicted RBP10.8□□□□□ -0.68
SNX13-201ENST00000409076 GOLGA6L2Q8N9W4 650 aaPredicted RBP10.8□□□□□ -0.68
SNX13-201ENST00000409076 TNNQ9UQP3 1299 aa10.8□□□□□ -0.68
SNX13-201ENST00000409076 CFAP43Q8NDM7 1665 aa10.8□□□□□ -0.68
SNX13-201ENST00000409076 EFCAB5A4FU69 1503 aa10.8□□□□□ -0.68
SNX13-201ENST00000409076 GOLGA2Q08379 1002 aa10.8□□□□□ -0.68
SNX13-201ENST00000409076 DHX29Q7Z478 1369 aaKnown RBP10.8□□□□□ -0.68
SNX13-201ENST00000409076 EHBP1L1Q8N3D4 1523 aa10.8□□□□□ -0.68
SNX13-201ENST00000409076 DENND4BO75064 1496 aaPredicted RBP10.79□□□□□ -0.68
SNX13-201ENST00000409076 ERCC6Q03468 1493 aa10.79□□□□□ -0.68
SNX13-201ENST00000409076 APBB1O00213 710 aa10.79□□□□□ -0.68
SNX13-201ENST00000409076 ARID3AQ99856 593 aa10.78□□□□□ -0.68
SNX13-201ENST00000409076 GRIN2BQ13224 1484 aa10.78□□□□□ -0.68
SNX13-201ENST00000409076 SOX12O15370 315 aa10.78□□□□□ -0.68
SNX13-201ENST00000409076 DDRGK1Q96HY6 314 aa10.78□□□□□ -0.68
SNX13-201ENST00000409076 DNMBPQ6XZF7 1577 aa10.78□□□□□ -0.68
SNX13-201ENST00000409076 MFAP1P55081 439 aaKnown RBP10.78□□□□□ -0.68
SNX13-201ENST00000409076 GGT6Q6P531 493 aa10.78□□□□□ -0.68
SNX13-201ENST00000409076 RPRD2Q5VT52 1461 aaKnown RBP10.78□□□□□ -0.68
SNX13-201ENST00000409076 MAP3K1Q13233 1512 aa10.77□□□□□ -0.68
SNX13-201ENST00000409076 ELL2O00472 640 aaPredicted RBP10.77□□□□□ -0.68
SNX13-201ENST00000409076 TMEM132EQ6IEE7 984 aa10.77□□□□□ -0.68
SNX13-201ENST00000409076 SPINK5Q9NQ38 1064 aaPredicted RBP10.77□□□□□ -0.68
SNX13-201ENST00000409076 CCDC144AA2RUR9 1427 aa10.77□□□□□ -0.68
SNX13-201ENST00000409076 HSP90AA1P07900 732 aaKnown RBP10.77□□□□□ -0.69
SNX13-201ENST00000409076 AFAP1Q8N556 730 aa10.77□□□□□ -0.69
SNX13-201ENST00000409076 DISP3Q9P2K9 1392 aa10.77□□□□□ -0.69
SNX13-201ENST00000409076 KIAA1107Q9UPP5 1409 aa10.76□□□□□ -0.69
SNX13-201ENST00000409076 GSE1Q14687 1217 aa10.76□□□□□ -0.69
SNX13-201ENST00000409076 KIF3BO15066 747 aa10.76□□□□□ -0.69
SNX13-201ENST00000409076 CFAP70Q5T0N1 1121 aa10.76□□□□□ -0.69
SNX13-201ENST00000409076 DMRT2Q9Y5R5 561 aa10.76□□□□□ -0.69
SNX13-201ENST00000409076 ARHGEF11O15085 1522 aa10.75□□□□□ -0.69
SNX13-201ENST00000409076 PPP2R1AP30153 589 aa10.75□□□□□ -0.69
SNX13-201ENST00000409076 FTSJ3Q8IY81 847 aaKnown RBP10.75□□□□□ -0.69
SNX13-201ENST00000409076 UGGT2Q9NYU1 1516 aa10.74□□□□□ -0.69
SNX13-201ENST00000409076 U2AF1L5P0DN76 240 aaPredicted RBP10.74□□□□□ -0.69
SNX13-201ENST00000409076 U2AF1Q01081 240 aaKnown RBP eCLIP10.74□□□□□ -0.69
SNX13-201ENST00000409076 MORC1Q86VD1 984 aa10.74□□□□□ -0.69
SNX13-201ENST00000409076 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP10.74□□□□□ -0.69
SNX13-201ENST00000409076 POGKQ9P215 609 aa10.73□□□□□ -0.69
SNX13-201ENST00000409076 SEC24BO95487 1268 aa10.73□□□□□ -0.69
SNX13-201ENST00000409076 FAM161AQ3B820 660 aa10.73□□□□□ -0.69
SNX13-201ENST00000409076 UPF2Q9HAU5 1272 aaKnown RBP10.73□□□□□ -0.69
SNX13-201ENST00000409076 KDM5BQ9UGL1 1544 aa10.72□□□□□ -0.69
SNX13-201ENST00000409076 CAMSAP2Q08AD1 1489 aa10.72□□□□□ -0.69
SNX13-201ENST00000409076 IGHDP01880 384 aa10.72□□□□□ -0.69
SNX13-201ENST00000409076 TSR2Q969E8 191 aaKnown RBP10.72□□□□□ -0.69
SNX13-201ENST00000409076 NAP1L5Q96NT1 182 aaPredicted RBP10.71□□□□□ -0.69
SNX13-201ENST00000409076 BRD4O60885 1362 aaPredicted RBP10.71□□□□□ -0.69
SNX13-201ENST00000409076 C9orf84Q5VXU9 1444 aa10.71□□□□□ -0.7
SNX13-201ENST00000409076 FBLN1P23142 703 aa10.71□□□□□ -0.7
SNX13-201ENST00000409076 NCLP19338 710 aaKnown RBP10.7□□□□□ -0.7
SNX13-201ENST00000409076 ITPRIPQ8IWB1 547 aa10.7□□□□□ -0.7
SNX13-201ENST00000409076 TEX14Q8IWB6 1497 aa10.7□□□□□ -0.7
SNX13-201ENST00000409076 CTTNBP2Q8WZ74 1663 aa10.7□□□□□ -0.7
SNX13-201ENST00000409076 CENPJQ9HC77 1338 aaPredicted RBP10.7□□□□□ -0.7
SNX13-201ENST00000409076 NUTM2FA1L443 756 aa10.7□□□□□ -0.7
SNX13-201ENST00000409076 SLC12A5Q9H2X9 1139 aa10.7□□□□□ -0.7
SNX13-201ENST00000409076 FOXD4L5Q5VV16 416 aaPredicted RBP10.69□□□□□ -0.7
SNX13-201ENST00000409076 FOXD4L4Q8WXT5 416 aaPredicted RBP10.69□□□□□ -0.7
SNX13-201ENST00000409076 HECW1Q76N89 1606 aa10.69□□□□□ -0.7
SNX13-201ENST00000409076 CENPQQ7L2Z9 268 aaPredicted RBP10.68□□□□□ -0.7
SNX13-201ENST00000409076 PLEKHH1Q9ULM0 1364 aa10.68□□□□□ -0.7
SNX13-201ENST00000409076 PZPP20742 1482 aa10.68□□□□□ -0.7
SNX13-201ENST00000409076 IQGAP2Q13576 1575 aa10.68□□□□□ -0.7
SNX13-201ENST00000409076 LAMC3Q9Y6N6 1575 aa10.68□□□□□ -0.7
SNX13-201ENST00000409076 PDE3BQ13370 1112 aa10.68□□□□□ -0.7
SNX13-201ENST00000409076 LRRIQ1Q96JM4 1722 aa10.68□□□□□ -0.7
SNX13-201ENST00000409076 SRPK2P78362 688 aaKnown RBP10.67□□□□□ -0.7
SNX13-201ENST00000409076 MIA2Q96PC5 1412 aa10.67□□□□□ -0.7
SNX13-201ENST00000409076 DUSP27Q5VZP5 1158 aa10.67□□□□□ -0.7
SNX13-201ENST00000409076 C1orf115Q9H7X2 142 aa10.67□□□□□ -0.7
SNX13-201ENST00000409076 BCORL1Q5H9F3 1711 aa10.67□□□□□ -0.7
SNX13-201ENST00000409076 NUP153P49790 1475 aaKnown RBP10.66□□□□□ -0.7
SNX13-201ENST00000409076 SPATA31E1Q6ZUB1 1445 aa10.66□□□□□ -0.7
SNX13-201ENST00000409076 BECN1Q14457 450 aa10.66□□□□□ -0.7
SNX13-201ENST00000409076 SUGP2Q8IX01 1082 aaKnown RBP eCLIP10.66□□□□□ -0.7
SNX13-201ENST00000409076 SMC4Q9NTJ3 1288 aa10.66□□□□□ -0.7
SNX13-201ENST00000409076 TROQ12816 1431 aaPredicted RBP10.66□□□□□ -0.7
SNX13-201ENST00000409076 FOXD4L6Q3SYB3 417 aaPredicted RBP10.66□□□□□ -0.7
SNX13-201ENST00000409076 FOXD4L3Q6VB84 417 aaPredicted RBP10.66□□□□□ -0.7
SNX13-201ENST00000409076 STAG3Q9UJ98 1225 aa10.66□□□□□ -0.7
SNX13-201ENST00000409076 MLECQ14165 292 aa10.65□□□□□ -0.7
SNX13-201ENST00000409076 GGNBP2Q9H3C7 697 aa10.65□□□□□ -0.7
SNX13-201ENST00000409076 CARMIL2Q6F5E8 1435 aa10.65□□□□□ -0.7
SNX13-201ENST00000409076 PER1O15534 1290 aaPredicted RBP10.65□□□□□ -0.71
SNX13-201ENST00000409076 NOL8Q76FK4 1167 aaKnown RBP10.65□□□□□ -0.71
SNX13-201ENST00000409076 CABP2Q9NPB3 220 aa10.64□□□□□ -0.71
SNX13-201ENST00000409076 CUL7Q14999 1698 aa10.64□□□□□ -0.71
SNX13-201ENST00000409076 MS4A1P11836 297 aa10.64□□□□□ -0.71
SNX13-201ENST00000409076 TCP11L2Q8N4U5 519 aa10.64□□□□□ -0.71
SNX13-201ENST00000409076 ZNF428Q96B54 188 aa10.64□□□□□ -0.71
SNX13-201ENST00000409076 PTPRGP23470 1445 aa10.64□□□□□ -0.71
SNX13-201ENST00000409076 GPATCH8Q9UKJ3 1502 aaKnown RBP10.63□□□□□ -0.71
SNX13-201ENST00000409076 MTHFSP49914 203 aa10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 68.2 ms