RNA–Protein interactions for RNA: ENST00000409076.6

SNX13-201, Transcript of sorting nexin 13, humanhuman

TSL 2

Gene SNX13, Length 3,818 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX13-201ENST00000409076 NISCHQ9Y2I1 1504 aa15.46■□□□□ 0.07
SNX13-201ENST00000409076 SHROOM4Q9ULL8 1493 aa14.75□□□□□ -0.05
SNX13-201ENST00000409076 SUPT5HO00267 1087 aaKnown RBP14.63□□□□□ -0.07
SNX13-201ENST00000409076 DCAF8L2P0C7V8 631 aa14.57□□□□□ -0.08
SNX13-201ENST00000409076 EHMT2Q96KQ7 1210 aa14.14□□□□□ -0.15
SNX13-201ENST00000409076 PCGF6Q9BYE7 350 aa14.02□□□□□ -0.17
SNX13-201ENST00000409076 PPARGC1BQ86YN6 1023 aaKnown RBP13.91□□□□□ -0.18
SNX13-201ENST00000409076 FAM9AQ8IZU1 332 aaPredicted RBP13.75□□□□□ -0.21
SNX13-201ENST00000409076 LOC105371045A0A1W2PR82 267 aa13.75□□□□□ -0.21
SNX13-201ENST00000409076 TTBK1Q5TCY1 1321 aaPredicted RBP13.64□□□□□ -0.23
SNX13-201ENST00000409076 CHIC1Q5VXU3 224 aa13.63□□□□□ -0.23
SNX13-201ENST00000409076 HRCP23327 699 aa13.59□□□□□ -0.23
SNX13-201ENST00000409076 MYO15BQ96JP2 1530 aa13.5□□□□□ -0.25
SNX13-201ENST00000409076 TRIM41Q8WV44 630 aa13.24□□□□□ -0.29
SNX13-201ENST00000409076 RANGAP1P46060 587 aaPredicted RBP13.17□□□□□ -0.3
SNX13-201ENST00000409076 TRIM26Q12899 539 aaPredicted RBP13.14□□□□□ -0.31
SNX13-201ENST00000409076 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.11□□□□□ -0.31
SNX13-201ENST00000409076 YTHDC1Q96MU7 727 aaKnown RBP13.07□□□□□ -0.32
SNX13-201ENST00000409076 CCER1Q8TC90 406 aaPredicted RBP13.06□□□□□ -0.32
SNX13-201ENST00000409076 ZCCHC6Q5VYS8 1495 aaKnown RBP12.97□□□□□ -0.33
SNX13-201ENST00000409076 SCAF1Q9H7N4 1312 aaKnown RBP12.88□□□□□ -0.35
SNX13-201ENST00000409076 UBTFP17480 764 aaKnown RBP12.82□□□□□ -0.36
SNX13-201ENST00000409076 HNRNPUL2Q1KMD3 747 aaKnown RBP12.8□□□□□ -0.36
SNX13-201ENST00000409076 ZEB1P37275 1124 aaPredicted RBP12.79□□□□□ -0.36
SNX13-201ENST00000409076 GTF3C3Q9Y5Q9 886 aa12.75□□□□□ -0.37
SNX13-201ENST00000409076 NEUROD1Q13562 356 aa12.73□□□□□ -0.37
SNX13-201ENST00000409076 DCAF1Q9Y4B6 1507 aa12.72□□□□□ -0.37
SNX13-201ENST00000409076 SCRIBQ14160 1630 aa12.72□□□□□ -0.37
SNX13-201ENST00000409076 DIEXFQ68CQ4 756 aaKnown RBP12.71□□□□□ -0.37
SNX13-201ENST00000409076 ABCC9O60706 1549 aa12.7□□□□□ -0.38
SNX13-201ENST00000409076 PELP1Q8IZL8 1130 aaKnown RBP12.64□□□□□ -0.39
SNX13-201ENST00000409076 ITGAEP38570 1179 aa12.63□□□□□ -0.39
SNX13-201ENST00000409076 CENPBP07199 599 aaPredicted RBP12.62□□□□□ -0.39
SNX13-201ENST00000409076 PABPN1Q86U42 306 aaKnown RBP eCLIP12.6□□□□□ -0.39
SNX13-201ENST00000409076 ACIN1Q9UKV3 1341 aaKnown RBP12.58□□□□□ -0.4
SNX13-201ENST00000409076 APLP2Q06481 763 aa12.56□□□□□ -0.4
SNX13-201ENST00000409076 RSF1Q96T23 1441 aaPredicted RBP12.55□□□□□ -0.4
SNX13-201ENST00000409076 RB1CC1Q8TDY2 1594 aa12.51□□□□□ -0.41
SNX13-201ENST00000409076 ATP1B4Q9UN42 357 aaPredicted RBP12.5□□□□□ -0.41
SNX13-201ENST00000409076 CCDC180Q9P1Z9 1646 aa12.48□□□□□ -0.41
SNX13-201ENST00000409076 CECR2Q9BXF3 1484 aa12.47□□□□□ -0.41
SNX13-201ENST00000409076 BCANQ96GW7 911 aa12.44□□□□□ -0.42
SNX13-201ENST00000409076 MIER1Q8N108 512 aa12.42□□□□□ -0.42
SNX13-201ENST00000409076 ZNF316A6NFI3 1004 aaPredicted RBP12.37□□□□□ -0.43
SNX13-201ENST00000409076 CNGB1Q14028 1251 aaPredicted RBP12.36□□□□□ -0.43
SNX13-201ENST00000409076 CSRNP3Q8WYN3 585 aa12.31□□□□□ -0.44
SNX13-201ENST00000409076 ABCC8Q09428 1581 aa12.3□□□□□ -0.44
SNX13-201ENST00000409076 HIRIP3Q9BW71 556 aaPredicted RBP12.3□□□□□ -0.44
SNX13-201ENST00000409076 SOGA1O94964 1423 aa12.28□□□□□ -0.44
SNX13-201ENST00000409076 MROH2BQ7Z745 1585 aa12.28□□□□□ -0.44
SNX13-201ENST00000409076 CEP162Q5TB80 1403 aa12.23□□□□□ -0.45
SNX13-201ENST00000409076 P3H3Q8IVL6 736 aa12.22□□□□□ -0.45
SNX13-201ENST00000409076 CCDC88BA6NC98 1476 aa12.22□□□□□ -0.45
SNX13-201ENST00000409076 WIZO95785 1651 aa12.22□□□□□ -0.45
SNX13-201ENST00000409076 RUSC2Q8N2Y8 1516 aa12.21□□□□□ -0.45
SNX13-201ENST00000409076 FAM50AQ14320 339 aaKnown RBP12.14□□□□□ -0.47
SNX13-201ENST00000409076 SENP3-EIF4A1A0A087X0R7 540 aa12.14□□□□□ -0.47
SNX13-201ENST00000409076 KCNH8Q96L42 1107 aa12.13□□□□□ -0.47
SNX13-201ENST00000409076 ARID3CA6NKF2 412 aa12.09□□□□□ -0.47
SNX13-201ENST00000409076 DDX10Q13206 875 aaKnown RBP12.08□□□□□ -0.48
SNX13-201ENST00000409076 TRIM52Q96A61 297 aa12.08□□□□□ -0.48
SNX13-201ENST00000409076 IRX6P78412 446 aaPredicted RBP12.07□□□□□ -0.48
SNX13-201ENST00000409076 MYT1Q01538 1121 aa12.06□□□□□ -0.48
SNX13-201ENST00000409076 POLR3GLQ9BT43 218 aa12.05□□□□□ -0.48
SNX13-201ENST00000409076 KANK4Q5T7N3 995 aaPredicted RBP12.03□□□□□ -0.48
SNX13-201ENST00000409076 FKBP8Q14318 412 aa12.03□□□□□ -0.48
SNX13-201ENST00000409076 CLIP1P30622 1438 aa12.02□□□□□ -0.49
SNX13-201ENST00000409076 SIN3AQ96ST3 1273 aa12□□□□□ -0.49
SNX13-201ENST00000409076 NEFLP07196 543 aa11.97□□□□□ -0.49
SNX13-201ENST00000409076 SUPT16HQ9Y5B9 1047 aaKnown RBP11.96□□□□□ -0.49
SNX13-201ENST00000409076 TNIKQ9UKE5 1360 aa11.96□□□□□ -0.49
SNX13-201ENST00000409076 WRNQ14191 1432 aaPredicted RBP eCLIP11.93□□□□□ -0.5
SNX13-201ENST00000409076 GOLGA3Q08378 1498 aa11.91□□□□□ -0.5
SNX13-201ENST00000409076 ERICH6Q7L0X2 663 aa11.89□□□□□ -0.51
SNX13-201ENST00000409076 CHIC2Q9UKJ5 165 aa11.86□□□□□ -0.51
SNX13-201ENST00000409076 RAPGEF2Q9Y4G8 1499 aa11.85□□□□□ -0.51
SNX13-201ENST00000409076 ZNF326Q5BKZ1 582 aaKnown RBP11.84□□□□□ -0.51
SNX13-201ENST00000409076 BAZ1AQ9NRL2 1556 aaPredicted RBP11.83□□□□□ -0.52
SNX13-201ENST00000409076 TSHZ2Q9NRE2 1034 aa11.81□□□□□ -0.52
SNX13-201ENST00000409076 HNRNPUQ00839 825 aaKnown RBP eCLIP11.8□□□□□ -0.52
SNX13-201ENST00000409076 ANP32CO43423 234 aa11.79□□□□□ -0.52
SNX13-201ENST00000409076 NACADO15069 1562 aa11.78□□□□□ -0.52
SNX13-201ENST00000409076 FAM9BQ8IZU0 186 aa11.78□□□□□ -0.52
SNX13-201ENST00000409076 CEP164Q9UPV0 1460 aa11.76□□□□□ -0.53
SNX13-201ENST00000409076 VPS8Q8N3P4 1428 aa11.75□□□□□ -0.53
SNX13-201ENST00000409076 SALL2Q9Y467 1007 aaPredicted RBP11.75□□□□□ -0.53
SNX13-201ENST00000409076 DHX57Q6P158 1386 aaKnown RBP11.75□□□□□ -0.53
SNX13-201ENST00000409076 SMARCA2P51531 1590 aa11.74□□□□□ -0.53
SNX13-201ENST00000409076 RRP7BPQ9NSQ0 103 aa11.74□□□□□ -0.53
SNX13-201ENST00000409076 TOP2AP11388 1531 aaKnown RBP11.72□□□□□ -0.53
SNX13-201ENST00000409076 FOXD1Q16676 465 aa11.72□□□□□ -0.53
SNX13-201ENST00000409076 BAZ1BQ9UIG0 1483 aaKnown RBP11.69□□□□□ -0.54
SNX13-201ENST00000409076 SMARCA4P51532 1647 aa11.69□□□□□ -0.54
SNX13-201ENST00000409076 RAB3GAP2Q9H2M9 1393 aa11.68□□□□□ -0.54
SNX13-201ENST00000409076 NBR1Q14596 966 aa11.68□□□□□ -0.54
SNX13-201ENST00000409076 ANP32EQ9BTT0 268 aa11.67□□□□□ -0.54
SNX13-201ENST00000409076 SYNJ1O43426 1573 aa11.67□□□□□ -0.54
SNX13-201ENST00000409076 EEA1Q15075 1411 aa11.66□□□□□ -0.54
SNX13-201ENST00000409076 CCNB3Q8WWL7 1395 aa11.66□□□□□ -0.54
SNX13-201ENST00000409076 TONSLQ96HA7 1378 aa11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms