RNA–Protein interactions for RNA: ENST00000399903.6

PTPRA-205, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

TSL 5 BASIC

Gene PTPRA, Length 3,337 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-205ENST00000399903 KIF15Q9NS87 1388 aa22.69■■□□□ 1.22
PTPRA-205ENST00000399903 RGL3Q3MIN7 710 aa22.68■■□□□ 1.22
PTPRA-205ENST00000399903 RPRD2Q5VT52 1461 aaKnown RBP22.67■■□□□ 1.22
PTPRA-205ENST00000399903 CDC42BPAQ5VT25 1732 aa22.66■■□□□ 1.22
PTPRA-205ENST00000399903 ITSN2Q9NZM3 1697 aa22.65■■□□□ 1.22
PTPRA-205ENST00000399903 GSE1Q14687 1217 aa22.65■■□□□ 1.22
PTPRA-205ENST00000399903 UBE2Q2Q8WVN8 375 aa22.65■■□□□ 1.22
PTPRA-205ENST00000399903 SMG6Q86US8 1419 aaKnown RBP22.65■■□□□ 1.22
PTPRA-205ENST00000399903 USP35Q9P2H5 1018 aa22.64■■□□□ 1.21
PTPRA-205ENST00000399903 TCERG1O14776 1098 aaKnown RBP22.62■■□□□ 1.21
PTPRA-205ENST00000399903 FRAT1Q92837 279 aaPredicted RBP22.62■■□□□ 1.21
PTPRA-205ENST00000399903 DCAF11Q8TEB1 546 aa22.62■■□□□ 1.21
PTPRA-205ENST00000399903 KIAA1107Q9UPP5 1409 aa22.61■■□□□ 1.21
PTPRA-205ENST00000399903 TEX14Q8IWB6 1497 aa22.61■■□□□ 1.21
PTPRA-205ENST00000399903 PLIN1O60240 522 aa22.6■■□□□ 1.21
PTPRA-205ENST00000399903 NFKBIBQ15653 356 aa22.59■■□□□ 1.21
PTPRA-205ENST00000399903 BACH2Q9BYV9 841 aa22.59■■□□□ 1.21
PTPRA-205ENST00000399903 ADCY10Q96PN6 1610 aa22.59■■□□□ 1.21
PTPRA-205ENST00000399903 ARHGAP5Q13017 1502 aa22.58■■□□□ 1.21
PTPRA-205ENST00000399903 ARXQ96QS3 562 aa22.57■■□□□ 1.2
PTPRA-205ENST00000399903 RRP1P56182 461 aaKnown RBP22.57■■□□□ 1.2
PTPRA-205ENST00000399903 MBD5Q9P267 1494 aa22.56■■□□□ 1.2
PTPRA-205ENST00000399903 ADGRL2O95490 1459 aa22.55■■□□□ 1.2
PTPRA-205ENST00000399903 RCAN3Q9UKA8 241 aa22.54■■□□□ 1.2
PTPRA-205ENST00000399903 SYCP2Q9BX26 1530 aa22.54■■□□□ 1.2
PTPRA-205ENST00000399903 WASHC2CQ9Y4E1 1318 aa22.54■■□□□ 1.2
PTPRA-205ENST00000399903 AFAP1Q8N556 730 aa22.54■■□□□ 1.2
PTPRA-205ENST00000399903 TTC37Q6PGP7 1564 aa22.53■■□□□ 1.2
PTPRA-205ENST00000399903 CARD11Q9BXL7 1154 aa22.53■■□□□ 1.2
PTPRA-205ENST00000399903 SAMD9LQ8IVG5 1584 aa22.52■■□□□ 1.2
PTPRA-205ENST00000399903 ADGBQ8N7X0 1667 aa22.51■■□□□ 1.19
PTPRA-205ENST00000399903 DDRGK1Q96HY6 314 aa22.49■■□□□ 1.19
PTPRA-205ENST00000399903 CCDC141Q6ZP82 1450 aa22.49■■□□□ 1.19
PTPRA-205ENST00000399903 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP22.49■■□□□ 1.19
PTPRA-205ENST00000399903 USP47Q96K76 1375 aa22.49■■□□□ 1.19
PTPRA-205ENST00000399903 CROCC2H7BZ55 1655 aa22.49■■□□□ 1.19
PTPRA-205ENST00000399903 RNF123Q5XPI4 1314 aa22.49■■□□□ 1.19
PTPRA-205ENST00000399903 CDC42BPBQ9Y5S2 1711 aa22.48■■□□□ 1.19
PTPRA-205ENST00000399903 PNISRQ8TF01 805 aaKnown RBP22.47■■□□□ 1.19
PTPRA-205ENST00000399903 ST20-MTHFSA0A0A6YYL1 179 aa22.46■■□□□ 1.19
PTPRA-205ENST00000399903 PLEKHH2Q8IVE3 1493 aa22.45■■□□□ 1.18
PTPRA-205ENST00000399903 ABCC2Q92887 1545 aa22.45■■□□□ 1.18
PTPRA-205ENST00000399903 FRAT2O75474 233 aaPredicted RBP22.45■■□□□ 1.18
PTPRA-205ENST00000399903 EFCAB2Q5VUJ9 269 aa22.45■■□□□ 1.18
PTPRA-205ENST00000399903 CDCA7LQ96GN5 454 aa22.44■■□□□ 1.18
PTPRA-205ENST00000399903 NBPF1Q3BBV0 1214 aa22.43■■□□□ 1.18
PTPRA-205ENST00000399903 ARHGEF12Q9NZN5 1544 aa22.43■■□□□ 1.18
PTPRA-205ENST00000399903 SPATA31E1Q6ZUB1 1445 aa22.41■■□□□ 1.18
PTPRA-205ENST00000399903 SHANK2Q9UPX8 1470 aa22.41■■□□□ 1.18
PTPRA-205ENST00000399903 RGS3P49796 1198 aa22.4■■□□□ 1.18
PTPRA-205ENST00000399903 CRBNQ96SW2 442 aa22.4■■□□□ 1.18
PTPRA-205ENST00000399903 TRAPPC8Q9Y2L5 1435 aa22.39■■□□□ 1.18
PTPRA-205ENST00000399903 SHROOM2Q13796 1616 aa22.39■■□□□ 1.18
PTPRA-205ENST00000399903 MS4A1P11836 297 aa22.39■■□□□ 1.17
PTPRA-205ENST00000399903 PREX2Q70Z35 1606 aa22.39■■□□□ 1.17
PTPRA-205ENST00000399903 RSPH4AQ5TD94 716 aa22.39■■□□□ 1.17
PTPRA-205ENST00000399903 FAM135AQ9P2D6 1515 aa22.36■■□□□ 1.17
PTPRA-205ENST00000399903 SPAG9O60271 1321 aaKnown RBP22.35■■□□□ 1.17
PTPRA-205ENST00000399903 CCDC144AA2RUR9 1427 aa22.35■■□□□ 1.17
PTPRA-205ENST00000399903 ROCK2O75116 1388 aaKnown RBP22.34■■□□□ 1.17
PTPRA-205ENST00000399903 DHX29Q7Z478 1369 aaKnown RBP22.33■■□□□ 1.16
PTPRA-205ENST00000399903 ARHGEF5Q12774 1597 aa22.33■■□□□ 1.16
PTPRA-205ENST00000399903 ZCCHC11Q5TAX3 1644 aaKnown RBP22.32■■□□□ 1.16
PTPRA-205ENST00000399903 PLCH2O75038 1416 aa22.32■■□□□ 1.16
PTPRA-205ENST00000399903 RSPH6AQ9H0K4 717 aa22.31■■□□□ 1.16
PTPRA-205ENST00000399903 CLASP1Q7Z460 1538 aa22.3■■□□□ 1.16
PTPRA-205ENST00000399903 C20orf194Q5TEA3 1177 aa22.29■■□□□ 1.16
PTPRA-205ENST00000399903 BCORL1Q5H9F3 1711 aa22.28■■□□□ 1.16
PTPRA-205ENST00000399903 KIF3BO15066 747 aa22.28■■□□□ 1.16
PTPRA-205ENST00000399903 PLA2R1Q13018 1463 aa22.28■■□□□ 1.16
PTPRA-205ENST00000399903 SENP3Q9H4L4 574 aaPredicted RBP22.27■■□□□ 1.16
PTPRA-205ENST00000399903 PKNOX2Q96KN3 472 aa22.26■■□□□ 1.15
PTPRA-205ENST00000399903 MYO5CQ9NQX4 1742 aa22.26■■□□□ 1.15
PTPRA-205ENST00000399903 SLKQ9H2G2 1235 aaPredicted RBP22.25■■□□□ 1.15
PTPRA-205ENST00000399903 CC2D1BQ5T0F9 858 aaKnown RBP22.24■■□□□ 1.15
PTPRA-205ENST00000399903 NAP1L5Q96NT1 182 aaPredicted RBP22.24■■□□□ 1.15
PTPRA-205ENST00000399903 SCAPERQ9BY12 1400 aa22.23■■□□□ 1.15
PTPRA-205ENST00000399903 POGKQ9P215 609 aa22.23■■□□□ 1.15
PTPRA-205ENST00000399903 VSIG10Q8N0Z9 540 aa22.22■■□□□ 1.15
PTPRA-205ENST00000399903 FAM43AQ8N2R8 423 aa22.22■■□□□ 1.15
PTPRA-205ENST00000399903 OSCARQ8IYS5 282 aa22.21■■□□□ 1.15
PTPRA-205ENST00000399903 MYBBP1AQ9BQG0 1328 aaKnown RBP22.21■■□□□ 1.15
PTPRA-205ENST00000399903 NPM1P06748 294 aaKnown RBP eCLIP22.2■■□□□ 1.14
PTPRA-205ENST00000399903 RALGAPBQ86X10 1494 aa22.19■■□□□ 1.14
PTPRA-205ENST00000399903 KDM5DQ9BY66 1539 aa22.19■■□□□ 1.14
PTPRA-205ENST00000399903 FAM161AQ3B820 660 aa22.18■■□□□ 1.14
PTPRA-205ENST00000399903 KDM5CP41229 1560 aa22.17■■□□□ 1.14
PTPRA-205ENST00000399903 ARID4BQ4LE39 1312 aaPredicted RBP22.17■■□□□ 1.14
PTPRA-205ENST00000399903 UHRF1BP1Q6BDS2 1440 aa22.17■■□□□ 1.14
PTPRA-205ENST00000399903 CHGAP10645 457 aaKnown RBP22.16■■□□□ 1.14
PTPRA-205ENST00000399903 A2MP01023 1474 aa22.16■■□□□ 1.14
PTPRA-205ENST00000399903 FANCAO15360 1455 aa22.16■■□□□ 1.14
PTPRA-205ENST00000399903 GLIPR1L2Q4G1C9 344 aa22.15■■□□□ 1.14
PTPRA-205ENST00000399903 GZF1Q9H116 711 aaPredicted RBP22.15■■□□□ 1.14
PTPRA-205ENST00000399903 WDR7Q9Y4E6 1490 aa22.15■■□□□ 1.14
PTPRA-205ENST00000399903 ASXL2Q76L83 1435 aa22.15■■□□□ 1.14
PTPRA-205ENST00000399903 PRAG1Q86YV5 1406 aa22.15■■□□□ 1.14
PTPRA-205ENST00000399903 SPRYD3Q8NCJ5 442 aa22.14■■□□□ 1.14
PTPRA-205ENST00000399903 RRAGDQ9NQL2 400 aaPredicted RBP22.14■■□□□ 1.14
PTPRA-205ENST00000399903 UHRF1BP1LA0JNW5 1464 aa22.14■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 69.8 ms