RNA–Protein interactions for RNA: ENST00000399903.6

PTPRA-205, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

TSL 5 BASIC

Gene PTPRA, Length 3,337 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-205ENST00000399903 NISCHQ9Y2I1 1504 aa34.3■■■■□ 3.08
PTPRA-205ENST00000399903 SHROOM4Q9ULL8 1493 aa29.65■■■□□ 2.34
PTPRA-205ENST00000399903 DCAF8L2P0C7V8 631 aa29.39■■■□□ 2.3
PTPRA-205ENST00000399903 CCDC180Q9P1Z9 1646 aa29.01■■■□□ 2.23
PTPRA-205ENST00000399903 SUPT5HO00267 1087 aaKnown RBP28.89■■■□□ 2.22
PTPRA-205ENST00000399903 ZCCHC6Q5VYS8 1495 aaKnown RBP28.87■■■□□ 2.21
PTPRA-205ENST00000399903 HRCP23327 699 aa28.64■■■□□ 2.18
PTPRA-205ENST00000399903 PPARGC1BQ86YN6 1023 aaKnown RBP28.47■■■□□ 2.15
PTPRA-205ENST00000399903 PCGF6Q9BYE7 350 aa28.45■■■□□ 2.14
PTPRA-205ENST00000399903 ABCC9O60706 1549 aa27.92■■■□□ 2.06
PTPRA-205ENST00000399903 DCAF1Q9Y4B6 1507 aa27.81■■■□□ 2.04
PTPRA-205ENST00000399903 MYO15BQ96JP2 1530 aa27.78■■■□□ 2.04
PTPRA-205ENST00000399903 CHIC1Q5VXU3 224 aa27.73■■■□□ 2.03
PTPRA-205ENST00000399903 SCRIBQ14160 1630 aa27.65■■■□□ 2.02
PTPRA-205ENST00000399903 PELP1Q8IZL8 1130 aaKnown RBP27.57■■■□□ 2
PTPRA-205ENST00000399903 LOC105371045A0A1W2PR82 267 aa27.44■■□□□ 1.98
PTPRA-205ENST00000399903 SCAF1Q9H7N4 1312 aaKnown RBP27.26■■□□□ 1.95
PTPRA-205ENST00000399903 TRIM26Q12899 539 aaPredicted RBP27.15■■□□□ 1.94
PTPRA-205ENST00000399903 RSF1Q96T23 1441 aaPredicted RBP27.13■■□□□ 1.93
PTPRA-205ENST00000399903 NACADO15069 1562 aa27.07■■□□□ 1.92
PTPRA-205ENST00000399903 CECR2Q9BXF3 1484 aa27.04■■□□□ 1.92
PTPRA-205ENST00000399903 EHMT2Q96KQ7 1210 aa26.88■■□□□ 1.89
PTPRA-205ENST00000399903 PABPN1Q86U42 306 aaKnown RBP eCLIP26.84■■□□□ 1.894e-6■■□□□ 13.3
PTPRA-205ENST00000399903 ZEB1P37275 1124 aaPredicted RBP26.84■■□□□ 1.89
PTPRA-205ENST00000399903 FAM9AQ8IZU1 332 aaPredicted RBP26.83■■□□□ 1.89
PTPRA-205ENST00000399903 RB1CC1Q8TDY2 1594 aa26.8■■□□□ 1.88
PTPRA-205ENST00000399903 MROH2BQ7Z745 1585 aa26.8■■□□□ 1.88
PTPRA-205ENST00000399903 TRIM41Q8WV44 630 aa26.73■■□□□ 1.87
PTPRA-205ENST00000399903 WIZO95785 1651 aa26.61■■□□□ 1.85
PTPRA-205ENST00000399903 NEUROD1Q13562 356 aa26.57■■□□□ 1.84
PTPRA-205ENST00000399903 GTF3C3Q9Y5Q9 886 aa26.52■■□□□ 1.84
PTPRA-205ENST00000399903 ACIN1Q9UKV3 1341 aaKnown RBP26.52■■□□□ 1.84
PTPRA-205ENST00000399903 MYT1Q01538 1121 aa26.41■■□□□ 1.82
PTPRA-205ENST00000399903 UNC13AQ9UPW8 1703 aa26.36■■□□□ 1.81
PTPRA-205ENST00000399903 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.34■■□□□ 1.81
PTPRA-205ENST00000399903 BAZ1AQ9NRL2 1556 aaPredicted RBP26.31■■□□□ 1.8
PTPRA-205ENST00000399903 CENPBP07199 599 aaPredicted RBP26.3■■□□□ 1.8
PTPRA-205ENST00000399903 CCER1Q8TC90 406 aaPredicted RBP26.29■■□□□ 1.8
PTPRA-205ENST00000399903 YTHDC1Q96MU7 727 aaKnown RBP26.19■■□□□ 1.78
PTPRA-205ENST00000399903 TTBK1Q5TCY1 1321 aaPredicted RBP26.19■■□□□ 1.78
PTPRA-205ENST00000399903 DIEXFQ68CQ4 756 aaKnown RBP26.19■■□□□ 1.78
PTPRA-205ENST00000399903 SMARCA4P51532 1647 aa26.17■■□□□ 1.78
PTPRA-205ENST00000399903 BICRAQ9NZM4 1560 aa26.13■■□□□ 1.77
PTPRA-205ENST00000399903 CCDC88BA6NC98 1476 aa26.09■■□□□ 1.77
PTPRA-205ENST00000399903 ABCC8Q09428 1581 aa26.02■■□□□ 1.76
PTPRA-205ENST00000399903 TOP2AP11388 1531 aaKnown RBP26■■□□□ 1.75
PTPRA-205ENST00000399903 SMARCA2P51531 1590 aa25.92■■□□□ 1.74
PTPRA-205ENST00000399903 EIF4G1Q04637 1599 aaKnown RBP25.79■■□□□ 1.72
PTPRA-205ENST00000399903 SOGA1O94964 1423 aa25.74■■□□□ 1.71
PTPRA-205ENST00000399903 ATAD2BQ9ULI0 1458 aa25.7■■□□□ 1.7
PTPRA-205ENST00000399903 RUSC2Q8N2Y8 1516 aa25.66■■□□□ 1.7
PTPRA-205ENST00000399903 BAZ1BQ9UIG0 1483 aaKnown RBP25.66■■□□□ 1.7
PTPRA-205ENST00000399903 UBTFP17480 764 aaKnown RBP25.62■■□□□ 1.69
PTPRA-205ENST00000399903 RANGAP1P46060 587 aaPredicted RBP25.58■■□□□ 1.69
PTPRA-205ENST00000399903 ZNF316A6NFI3 1004 aaPredicted RBP25.54■■□□□ 1.68
PTPRA-205ENST00000399903 CSRNP3Q8WYN3 585 aa25.53■■□□□ 1.68
PTPRA-205ENST00000399903 WRNQ14191 1432 aaPredicted RBP eCLIP25.52■■□□□ 1.68
PTPRA-205ENST00000399903 MIER1Q8N108 512 aa25.52■■□□□ 1.68
PTPRA-205ENST00000399903 PEG3Q9GZU2 1588 aa25.46■■□□□ 1.67
PTPRA-205ENST00000399903 SYNJ1O43426 1573 aa25.36■■□□□ 1.65
PTPRA-205ENST00000399903 CEP162Q5TB80 1403 aa25.32■■□□□ 1.64
PTPRA-205ENST00000399903 HNRNPUL2Q1KMD3 747 aaKnown RBP25.26■■□□□ 1.63
PTPRA-205ENST00000399903 TNIKQ9UKE5 1360 aa25.18■■□□□ 1.62
PTPRA-205ENST00000399903 NCAPD3P42695 1498 aa25.16■■□□□ 1.62
PTPRA-205ENST00000399903 GOLGA3Q08378 1498 aa25.12■■□□□ 1.61
PTPRA-205ENST00000399903 EEA1Q15075 1411 aa25.11■■□□□ 1.61
PTPRA-205ENST00000399903 BCL11AQ9H165 835 aa25.1■■□□□ 1.61
PTPRA-205ENST00000399903 RAPGEF2Q9Y4G8 1499 aa25.06■■□□□ 1.6
PTPRA-205ENST00000399903 SUPT16HQ9Y5B9 1047 aaKnown RBP25.06■■□□□ 1.6
PTPRA-205ENST00000399903 BCANQ96GW7 911 aa25.01■■□□□ 1.59
PTPRA-205ENST00000399903 ANP32EQ9BTT0 268 aa25.01■■□□□ 1.59
PTPRA-205ENST00000399903 HMGXB3Q12766 1538 aa24.99■■□□□ 1.59
PTPRA-205ENST00000399903 CEP164Q9UPV0 1460 aa24.99■■□□□ 1.59
PTPRA-205ENST00000399903 CLIP1P30622 1438 aa24.95■■□□□ 1.59
PTPRA-205ENST00000399903 TSHZ2Q9NRE2 1034 aa24.95■■□□□ 1.58
PTPRA-205ENST00000399903 CUX1P39880 1505 aa24.92■■□□□ 1.58
PTPRA-205ENST00000399903 TOP2BQ02880 1626 aa24.91■■□□□ 1.58
PTPRA-205ENST00000399903 DNAJC5BQ9UF47 199 aa24.91■■□□□ 1.58
PTPRA-205ENST00000399903 CFTRP13569 1480 aa24.89■■□□□ 1.57
PTPRA-205ENST00000399903 CC2D2AQ9P2K1 1620 aa24.87■■□□□ 1.57
PTPRA-205ENST00000399903 APLP2Q06481 763 aa24.85■■□□□ 1.57
PTPRA-205ENST00000399903 CADPSQ9ULU8 1353 aa24.8■■□□□ 1.56
PTPRA-205ENST00000399903 KIF21BO75037 1637 aa24.78■■□□□ 1.56
PTPRA-205ENST00000399903 KIF27Q86VH2 1401 aa24.73■■□□□ 1.55
PTPRA-205ENST00000399903 NESP48681 1621 aa24.73■■□□□ 1.55
PTPRA-205ENST00000399903 BIVM-ERCC5R4GMW8 1640 aa24.73■■□□□ 1.55
PTPRA-205ENST00000399903 CUX2O14529 1486 aa24.7■■□□□ 1.54
PTPRA-205ENST00000399903 VPS8Q8N3P4 1428 aa24.67■■□□□ 1.54
PTPRA-205ENST00000399903 P3H3Q8IVL6 736 aa24.65■■□□□ 1.54
PTPRA-205ENST00000399903 PRXQ9BXM0 1461 aa24.65■■□□□ 1.54
PTPRA-205ENST00000399903 KANK4Q5T7N3 995 aaPredicted RBP24.63■■□□□ 1.53
PTPRA-205ENST00000399903 FKBP8Q14318 412 aa24.61■■□□□ 1.53
PTPRA-205ENST00000399903 KCNH8Q96L42 1107 aa24.61■■□□□ 1.53
PTPRA-205ENST00000399903 FGD5Q6ZNL6 1462 aa24.6■■□□□ 1.53
PTPRA-205ENST00000399903 CLSPNQ9HAW4 1339 aa24.59■■□□□ 1.53
PTPRA-205ENST00000399903 FANCD2Q9BXW9 1451 aa24.58■■□□□ 1.53
PTPRA-205ENST00000399903 ATP1B4Q9UN42 357 aaPredicted RBP24.58■■□□□ 1.53
PTPRA-205ENST00000399903 IGF1RP08069 1367 aa24.57■■□□□ 1.52
PTPRA-205ENST00000399903 RAD54L2Q9Y4B4 1467 aa24.55■■□□□ 1.52
PTPRA-205ENST00000399903 ITGAEP38570 1179 aa24.54■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms